RNA id: XM_021600609.2


Basic Information

Item Value
RNA id XM_021600609.2
length 4189
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110522308
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21683716 ~ 21701617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTGGCTTTTCGTCACCGTAGCCAGGGcaccaaaacagcagagaagttgaGCCTTGAGTTTCCACGCGTTTAgttgcggaaattgacccactgCGGTTAATTTTCTGAATCATATAATCTACCAAAGTTAGTgacaccagtacagtaggtggcagtaATGCGCAATTAACGTTGATACTTGTTAGCCAACCAcaccacagaatgaattgtgttGCCTGCTTTCGCATATGTCCTAGCAAGCTTTATTAGCTAGCATTAGAAGACTCCCCTTTGTTTTTGGTTAAAAGTAACCGGCTTTGAGGGGCTTTAATGTTCCGTGAAGCTCATTTAAAGACCATCGGTAAAGCGGGAACCAGCTGGCACTTTAGCCGGGCGATGGACGAGCTGGTCCATGACCTGGTGTCGGCGCTGGAGGAGAGCTCGGAGCAGGCGGCACGGGGGGGCTTCGGGGATGGGGGGGACCACGCGCTGGCCGTAGGCTGCCTGCTGAAGAGACAGGCCCGGAAACGTCGTGGGAGGAAGCGACGCTCTGACAACCCCCACCCACCCTGGGAGACTGGCCACCTCAGTGAGGGATCTGAGTCCAGCCTGGATGAACACAAGGACTACCGCACCACCACAGGCGGCATTGCCAGCAGCAACAGCCACGCCCGTGATAACAGCGACTCTGATGAGCAGCTGGGGTCCAAGCGCCGTACACCCCTGAACCCTGACACAGGGCGTGCCAAACGCCCCATCTGGCAGGAGGATCTAGGAGGAGTTCCGGGTGCAGAGGGGTCCCGTAGTTTGAGGCGACGGCGCAAGGTCAAACGCATGGCCGTGGACCCCCCTCTGGAGCCGGTGACCTCCAGTAGCAACACCCCCATGCTAGGGCCCCCACCCGTCCCCAAGCCCCACGCAGGGTGCAGGATCCCTGGGGTGAGCGTGGCTGAGGGCAGGGCGGGGATGGAGCTcgttggtggtggtggggttggaaGAGGGAAAAGCAGGATAAAGAAGAGGAAAATGGCTGCCCACAGGCTGGGGCTGGAGGCAACTGAtgaaggggtggtggtggagagtGAGGACGCCATTATGGGGCAGGCAGGGCCCAAGGACAAGATGGAGTTTGAGGAGCAGAAGGGCTCGGACGAGGACATGAGTGACAGGTGtgAGACCAGCAGTGTCAGCAACAGTAGCGATGGTGGACTGTACACCAATGACGAGGGGAGGCAAGCTGATGATGAGCAGAGTGACTGGTTCTATGAGGGGGACCCGGGGGGAGCGTGTGGGGTGGCGGGGGTGATTccctggtgggagagagaggcaggggaggaaCTGGACCTGGCTGACCCTGTCTTCAACAGCATCCTCACCGGATCCTTCCCCATCATGAGCCCCAGGGCACAGAGAGGGTTCCAGGCCAGGCTGAGCTGGCTGCATGGTGGGCCCCAGGGCCACGATTCCCAGGGCAGCCCAGGACAGTCCTTCAACGAGCGGCTGGGACGACACCACCAGGACCCCCCCCACTCACACGACCCGTGGTTTAGTCCGGGGTCTAGACGAGAACACGGACAAatgcaCTGGGACTCACGGACAGACAGAGGGCATCGGAGGAGCTGCTCAGTGAAAACAGCCAGCAGACAGACGAGTGGTCACCTTGGGTCTCTGTGTACGGGGGAAGTCAAGAGGAGACGCAAAGCAGCACCCCTTGGCTTACCTCCACCCACAGGGGTGGTAGGTGAGAGTGCGGGGCCCATCCCAGAGACCAACATGGGGAACCGGATGCTGCAGAGTATGGGCTGGAGCCCTGGCATGGGCTTGGGTCCGGAGGGCAGGGGCATCACTGAGCCTGTTCGGGCCACACAGAGACCCAAGGGAGCGGGCCTGGGTTTTAACTGAGCCCCATGCTTTAGGCCCCAAACTGAACAGGCCAGGCCAGCAGGCCTCGATGGAGATGGACCCTACTGAGAGCAGGGAGGACGGTGGTCAACACTTCCTGGGAAAGAAGGACTGATAGAGCATCAGAGCTGGAAGAAGGAACAAATGCAAATGTTTTACTTAAAGGAGGACGAACATCCTATGATAGGGAAAGTCACAACCCTGGTTAGAGAGGAAGTGCATGGAGCGTTAGGGTTCCCATCAggactcctgagtggcgcagcggtctaaggcactgcgtcactacagtccctggttcgaatccaggctgtatcacatccggccgtgattgggagtcccatagggcggcgcacaattgacccagcgtcatccgggtttgaccggggtaggccgtccttgtaattaagaatttgttcttaacctacttgcctatttaaattaaggttaaataaaataaaaatatattttttaaactcagATTTGTACTTGATGTCCAACATACCAGGGAAAAGAGAAGGAATGAAGAGAAGACAACCAGGCATTGTAGTTGGGTTTGATTGTGTGCAACTAGCCAGGCTATATAGTTGGACTGTGTACTACACACTAAAAGGCTCAGTTTCACAAGAATACAATTTCTCTTCAATCAATGTTCCATTTTCTGTAAGTATGGCAGAGCCAAATGGTTGTGTGATGTTGCACAGgatgacaaaaaatatatttcaggTTAAAATAATTGTAAGCATCAAAATCACTCATGGATGTTCATGTGGTTGAAGTTATAGTTTCTTTTAAATATTTGTTGCAATGCCACATTACATTGGCATTATTCCAAGGTAACTATAGTGGTATAACCTATGTAGCTAGTACTTACTCTGGTTAGTACAAAAAGGTGATGGCTGAAGTGGTAGCTAAGTAGTGCATGGTAATTAAATGTATACTACTTGTAGTTGCATTACATTAGTGTTATACCAGAGTAACTggcaaatgtaaaaacaaaaaaaaatagggTAAATGTAATATATATTACATTTAAACTATCATATGCTTTCTTTGGAATATTGGTCAGTTATGTTGGAATGTGTAGATGGTATGCCTGAGGGAAGAGAGTGGTAAATGATTCAGGAAATTAATCATGGTATGGTCAATCCCTGAAGATTCCAGAATAGTGTCTATTTTATTAAAAAGAAGCCAAACAAAAGTCAAAAGTAATCAGGCTGTACTTGCTTTGTATGCATCACATGGAAATGCCTCCTTTCCAATAATGATTTACAGTGGTCGTGTCCAAAATCTGGCTTGCCCAATACTTAGTTAAATtgcatactgtgtactaatcgtACTACATCTGGTATTCCAAGTCGGGGTCGTGACCCCAATGCAATGGAGTCGCCAGATTTTCTTTGGGTTGAAGGGGCACAAGAAATGACTGTATGGGACAATGTATAACGTTTttgagtaaatgtatttattggttcCTATTCATTTTGATGAGAAAGCTGGAAATGTAATGAGTTGAAGGTTGTTTGTTGATGTAAAAAATCGAAATGTACAGATTTTAAGGTTGTTTCATTAGATTTTGGGGTGGGAGGAGGTTTGCCAGAAATTCTGGAGAAAATAATGGTATCCCCGCTGAGAAAGTTTGAATACTACAATACCACTTTACTACATAGTATTTAGAACGTACTGTTTATTAAAATCAAATGCAGTAAGCAACATATCAGCTGTACTCGTCTCATCCTACTGAGAATGTGTCATCTAATACGCAATTACGTTGATTCCCGCCGTTTGGTCATTTTAGTACAGCGCGTCCTCagctgattatcagctgttgtctaGCAAGACGATTCTCTTCCTCATGTGCAGcaaattctactagatgaaaagaCTAAATGAGTATGACATCATGGCATTTAAAGCATACTAAGGAAATACAAAGTCACACACTATAAAACCTTTTAAAAATTTGCATACCCAAAATGCCTACTATTTTGAACTATTACAGGTATTCGGACACAGGCAATGACGTTTTATGAAGCGAAGGGCATTACTTTACAGTCCTGTAGTTATTTTAGTCTGCCATTTACCTGGTAAATACCAACTGAAATAGGATGGCAAAATAAAGTGTTGGCAATGTAATGTGTGGAATAATCCCCTTGTATTATGAGCAGATGTGAGATCAATTTCTCTTACCACGGTCTGGTCTTTAACAATTATTAGCAGAACTGTGCAAAACTGTTTTACATGTCAGTTAAATCAGGAAGGAACAAAGTAAATGTGGTGATACTCTGAAACAATAAACACTGTTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375358 lncRNA upstream 35889 21610383 ~ 21647832 (+) True LOC110522300
TU375060 lncRNA upstream 206342 21473481 ~ 21477379 (+) True G331320
TU375023 lncRNA upstream 260109 21423408 ~ 21423612 (+) True G331288
TU375020 lncRNA upstream 264076 21419411 ~ 21419645 (+) True G331285
TU375015 lncRNA upstream 275736 21407772 ~ 21407985 (+) True G331280
TU375724 lncRNA downstream 55501 21757118 ~ 21757385 (+) True G331913
TU375725 lncRNA downstream 56104 21757721 ~ 21758033 (+) True G331914
TU375732 lncRNA downstream 62512 21764129 ~ 21780103 (+) True G331921
TU375744 lncRNA downstream 92178 21793795 ~ 21796979 (+) True G331930
TU375827 lncRNA downstream 139855 21841472 ~ 21841674 (+) True G331992
XM_036975890.1 mRNA upstream 1524 21649885 ~ 21682197 (+) False LOC110522307
XM_036975891.1 mRNA upstream 1524 21649885 ~ 21682197 (+) False LOC110522307
XM_036975888.1 mRNA upstream 1524 21649886 ~ 21682197 (+) False LOC110522307
XM_036975889.1 mRNA upstream 1524 21649888 ~ 21682197 (+) True LOC110522307
XM_036975887.1 mRNA upstream 35882 21585618 ~ 21647839 (+) False LOC110522300
XM_021600612.2 mRNA downstream 311 21701928 ~ 21747105 (+) False LOC110522310
XM_021600611.2 mRNA downstream 21222 21722839 ~ 21747105 (+) True LOC110522310
XM_036975894.1 mRNA downstream 388374 22089991 ~ 22099593 (+) False mrps18a
XM_021600626.2 mRNA downstream 388377 22089994 ~ 22099593 (+) True mrps18a
XM_021600628.2 mRNA downstream 480330 22181947 ~ 22185746 (+) True pou3f2a
TU374473 other upstream 862564 20820668 ~ 20821157 (+) True G330771
TU373137 other upstream 1429810 20252767 ~ 20253911 (+) True G329626
TU373066 other upstream 1583665 20097356 ~ 20100056 (+) True G329556
TU372530 other upstream 2413196 19269416 ~ 19270525 (+) False LOC110522251
TU372517 other upstream 2415165 19264038 ~ 19268556 (+) True LOC110522250
TU376355 other downstream 796883 22498500 ~ 22498996 (+) True G332458
TU376404 other downstream 891313 22592930 ~ 22593362 (+) True G332507
TU377043 other downstream 1254262 22955879 ~ 22958196 (+) True G333079
TU377442 other downstream 2044212 23745829 ~ 23748271 (+) True ccdc167
TU378192 other downstream 2132204 23833821 ~ 23834422 (+) False G334116

Expression Profile