RNA id: TU375361


Basic Information

Item Value
RNA id TU375361
length 2812
RNA type TUCP
GC content 0.43
exon number 6
gene id LOC110522308
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21683716 ~ 21701617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTAGTATATGATATGTGCACTGTGCTGTCTCTGCTGTGGCAGGGTTCCAGGCCAGGCTGAGCTGGCTGCATGGTGGGCCCCAGGGCCACGATTCCCAGGGCAGCCCAGGACAGTCCTTCAACGAGCGGCTGGGACGACACCACCAGGACCCCCCCCACTCACACGACCCGTGGTTTAGTCCGGGGTCTAGACGAGAACACGGACAAatgcaCTGGGACTCACGGACAGACAGAGGGCATCGGAGGAGCTGCTCAGTGAAAACAGCCAGCAGACAGACGAGTGGTCACCTTGGGTCTCTGTGTACGGGGGAAGTCAAGAGGAGACGCAAAGCAGCACCCCTTGGCTTACCTCCACCCACAGGGGTGGTAGGTGAGAGTGCGGGGCCCATCCCAGAGACCAACATGGGGAACCGGATGCTGCAGAGTATGGGCTGGAGCCCTGGCATGGGCTTGGGTCCGGAGGGCAGGGGCATCACTGAGCCTGTTCGGGCCTGGGTTTTAACTGAGCCCCATGCTTTAGGCCCCAAACTGAACAGGCCAGGCCAGCAGGCCTCGATGGAGATGGACCCTACTGAGAGCAGGGAGGACGGTGGTCAACACTTCCTGGGAAAGAAGGACTGATAGAGCATCAGAGCTGGAAGAAGGAACAAATGCAAATGTTTTACTTAAAGGAGGACGAACATCCTATGATAGGGAAAGTCACAACCCTGGTTAGAGAGGAAGTGCATGGAGCGTTAGGGTTCCCATCAggactcctgagtggcgcagcggtctaaggcactgcgtcactacagtccctggttcgaatccaggctgtatcacatccggccgtgattgggagtcccatagggcggcgcacaattgacccagcgtcatccgggtttgaccggggtaggccgtccttgtaattaagaatttgttcttaacctacttgcctatttaaattaaggttaaataaaataaaaatatattttttaaactcagATTTGTACTTGATGTCCAACATACCAGGGAAAAGAGAAGGAATGAAGAGAAGACAACCAGGCATTGTAGTTGGGTTTGATTGTGTGCAACTAGCCAGGCTATATAGTTGGACTGTGTACTACACACTAAAAGGCTCAGTTTCACAAGAATACAATTTCTCTTCAATCAATGTTCCATTTTCTGTAAGTATGGCAGAGCCAAATGGTTGTGTGATGTTGCACAGgatgacaaaaaatatatttcaggTTAAAATAATTGTAAGCATCAAAATCACTCATGGATGTTCATGTGGTTGAAGTTATAGTTTCTTTTAAATATTTGTTGCAATGCCACATTACATTGGCATTATTCCAAGGTAACTATAGTGGTATAACCTATGTAGCTAGTACTTACTCTGGTTAGTACAAAAAGGTGATGGCTGAAGTGGTAGCTAAGTAGTGCATGGTAATTAAATGTATACTACTTGTAGTTGCATTACATTAGTGTTATACCAGAGTAACTggcaaatgtaaaaacaaaaaaaaatagggTAAATGTAATATATATTACATTTAAACTATCATATGCTTTCTTTGGAATATTGGTCAGTTATGTTGGAATGTGTAGATGGTATGCCTGAGGGAAGAGAGTGGTAAATGATTCAGGAAATTAATCATGGTATGGTCAATCCCTGAAGATTCCAGAATAGTGTCTATTTTATTAAAAAGAAGCCAAACAAAAGTCAAAAGTAATCAGGCTGTACTTGCTTTGTATGCATCACATGGAAATGCCTCCTTTCCAATAATGATTTACAGTGGTCGTGTCCAAAATCTGGCTTGCCCAATACTTAGTTAAATtgcatactgtgtactaatcgtACTACATCTGGTATTCCAAGTCGGGGTCGTGACCCCAATGCAATGGAGTCGCCAGATTTTCTTTGGGTTGAAGGGGCACAAGAAATGACTGTATGGGACAATGTATAACGTTTttgagtaaatgtatttattggttcCTATTCATTTTGATGAGAAAGCTGGAAATGTAATGAGTTGAAGGTTGTTTGTTGATGTAAAAAATCGAAATGTACAGATTTTAAGGTTGTTTCATTAGATTTTGGGGTGGGAGGAGGTTTGCCAGAAATTCTGGAGAAAATAATGGTATCCCCGCTGAGAAAGTTTGAATACTACAATACCACTTTACTACATAGTATTTAGAACGTACTGTTTATTAAAATCAAATGCAGTAAGCAACATATCAGCTGTACTCGTCTCATCCTACTGAGAATGTGTCATCTAATACGCAATTACGTTGATTCCCGCCGTTTGGTCATTTTAGTACAGCGCGTCCTCagctgattatcagctgttgtctaGCAAGACGATTCTCTTCCTCATGTGCAGcaaattctactagatgaaaagaCTAAATGAGTATGACATCATGGCATTTAAAGCATACTAAGGAAATACAAAGTCACACACTATAAAACCTTTTAAAAATTTGCATACCCAAAATGCCTACTATTTTGAACTATTACAGGTATTCGGACACAGGCAATGACGTTTTATGAAGCGAAGGGCATTACTTTACAGTCCTGTAGTTATTTTAGTCTGCCATTTACCTGGTAAATACCAACTGAAATAGGATGGCAAAATAAAGTGTTGGCAATGTAATGTGTGGAATAATCCCCTTGTATTATGAGCAGATGTGAGATCAATTTCTCTTACCACGGTCTGGTCTTTAACAATTATTAGCAGAACTGTGCAAAACTGTTTTACATGTCAGTTAAATCAGGAAGGAACAAAGTAAATGTGGTGATACTCTGAAACAATAAACACTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375358 lncRNA upstream 41140 21610383 ~ 21647832 (+) True LOC110522300
TU375060 lncRNA upstream 211593 21473481 ~ 21477379 (+) True G331320
TU375023 lncRNA upstream 265360 21423408 ~ 21423612 (+) True G331288
TU375020 lncRNA upstream 269327 21419411 ~ 21419645 (+) True G331285
TU375015 lncRNA upstream 280987 21407772 ~ 21407985 (+) True G331280
TU375724 lncRNA downstream 55504 21757118 ~ 21757385 (+) True G331913
TU375725 lncRNA downstream 56107 21757721 ~ 21758033 (+) True G331914
TU375732 lncRNA downstream 62515 21764129 ~ 21780103 (+) True G331921
TU375744 lncRNA downstream 92181 21793795 ~ 21796979 (+) True G331930
TU375827 lncRNA downstream 139858 21841472 ~ 21841674 (+) True G331992
XM_036975890.1 mRNA upstream 6775 21649885 ~ 21682197 (+) False LOC110522307
XM_036975891.1 mRNA upstream 6775 21649885 ~ 21682197 (+) False LOC110522307
XM_036975888.1 mRNA upstream 6775 21649886 ~ 21682197 (+) False LOC110522307
XM_036975889.1 mRNA upstream 6775 21649888 ~ 21682197 (+) True LOC110522307
XM_036975887.1 mRNA upstream 41133 21585618 ~ 21647839 (+) False LOC110522300
XM_021600612.2 mRNA downstream 314 21701928 ~ 21747105 (+) False LOC110522310
XM_021600611.2 mRNA downstream 21225 21722839 ~ 21747105 (+) True LOC110522310
XM_036975894.1 mRNA downstream 388377 22089991 ~ 22099593 (+) False mrps18a
XM_021600626.2 mRNA downstream 388380 22089994 ~ 22099593 (+) True mrps18a
XM_021600628.2 mRNA downstream 480333 22181947 ~ 22185746 (+) True pou3f2a
TU375366 other upstream 364 21683934 ~ 21688608 (+) False LOC110522308
TU374473 other upstream 867815 20820668 ~ 20821157 (+) True G330771
TU373137 other upstream 1435061 20252767 ~ 20253911 (+) True G329626
TU373066 other upstream 1588916 20097356 ~ 20100056 (+) True G329556
TU372530 other upstream 2418447 19269416 ~ 19270525 (+) False LOC110522251
TU376355 other downstream 796886 22498500 ~ 22498996 (+) True G332458
TU376404 other downstream 891316 22592930 ~ 22593362 (+) True G332507
TU377043 other downstream 1254265 22955879 ~ 22958196 (+) True G333079
TU377442 other downstream 2044215 23745829 ~ 23748271 (+) True ccdc167
TU378192 other downstream 2132207 23833821 ~ 23834422 (+) False G334116

Expression Profile