RNA id: XM_036975913.1


Basic Information

Item Value
RNA id XM_036975913.1
length 3530
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC118964450
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22455884 ~ 22462023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATACAGTAGGCTAGCTCCTATACTGAGGAAAAACGTATGACTCCCGGACATCGTACCAAAAAAACGTATGTCTCCCGGACATCGTACCAATAGATTTGAGTCAATAACACGGTCACACAAAAGGTTCATATTACCTTAGTCTGAGGATTCCCACATTCCTATCCACACCAAATATATTTTGGTTTTGAGCGATCAGATGCGTTTTGCAACGCTTCTTGTTTATGTCGACAAGTGTCAGTAAACTATTTGGGTCAGAACCTAGCGGGGATCAAATGACGCGAGCGGTGATATTGTGCAACCTTCACCAACAGCAATTGACAATATGaaaacaaatcaactgtaaaatAGTGGTGAAATAGGATCAAAGTACCTGCCAACGCGCCAGACATCCAGTTTTGCGGCGTAGCCTTTCAAATCCAAATATTAGCGCAGTTGTCACATATCGGTAGTCTACATTTTGACATTATAAATGGTAAACAATTACGAGTAGCTTGGAGTCACAAGACGAAATCTGCCAAGCACCCCAAAGCGGAGTAGCAACAGGGGTGCCTATTGGCTCAGAGAACGGCAGCTAAAATAGCTATGTAaacactttccctctctccattgcTTTGTAATTATAGACAGGATGGTGGTGAAGACAGTCGTGCTAGAATACATTTGACATTATCATACTTGATCCTGGCCCCAGTGACGCGGTGTAAATACCAGGCGCACTATAAAGGCAGGGTCCCCCTCTGGAACAGAAGTTGTTTACCCTGGGGGAAAAAGGCACCTGCTCCGGATTTAACCCCGCTGCCTAGGAGTGACAATCCACGCGACTTTACGTAATAGAGTGGAGGCAACCGAAAGGGAGAGCTGTGGAAGAGGGGAGCAGAACCGCCACCGGGCAGACACACAGTTTGCGAGCTAAAGAGAGGGCCACTGTGAAGACCTTCACTAGACTAAAATCTGGATTAATTTTCTGCTATTATTTATTATAAGTATATGCCACTGCAATATACCTCCAGCGATTGGCAATAAAATCTTCAAGGAAACTATTGCACAGCCAGTTTACCTCCAACTATTCCACACGTTGGTGACCCCATCAAGACAGAAAGACGCGAGGAAGTTGAAACAGAAAAAGAGAGGAAGTTTGTGACAGGAAGTAAGAAGCTGCTGCAGGAAGTGGCCCAAAATGGAGGCCATCAAACTACAGCAGAGTCTGAAGCGGTCTGGAAGGGGCtggggaacagagaggggggagctTCTGGACAGCTTCGACTCAGAGATGCAGGAATGGGAGGACCAGCTGCAGGACATGCAGAGGAAGATAGAGGAGCTTTACAACGAGGTGCAGGCTCGGAGAGGTGGAAATGATGTCACCATGGACAACAGCAGAAATGATAGGATGATTGATTGCGGCCGTGGGCATCATGACAATGGCTTCTGTGACCCGTATGGCAGCCACATCAACGCCACCAAGGACCACCCCAGTGCTGTAGATGCTTTTAATCACGGCCCCAACGGTTACGGCTACCCTGTCAACCATCAGAATGGCGGCTATGGTTATCCCCTTAGCAACAGTGCGGTGGAACTTGGAGACTTGTTGCAGGATTATCTTGGACATGGTCACGGAAAGACCCGGAAGACCAACTCCGCTATCAACAATCATCTGAAGGAGATCACTAAAGGGAGCCAGGATCAGTCTGTACACCAGGATGAGATGAAGAGGAGGCCTGTTGGGAATGAAAGGATTAGTAAGGTGCGGTTTGCAGACGAGGAGGCTGAGAACAGGAAGAACAGGGTGTCACACAGAAAGAGTTCCCCTTGCAGAGACCTTAACAAGGAGAACACAGGGGCCAATCCCCCCCTCAGACAGCGAGAAGGTCCTCCCATACCCCCCCGATCCACCTCCCAGATGGCCCCTCCCGACACCTTCTCCCCAGCCCTGGACAGGATGTCCAATGCCCCTGGGGTCCTTGTGGACAGGAAGTGTGGTAGCCCCTCAGTCCTCAGAAAGTTTGGAGCCATGCTCCAGGAAAACGAGGGCAAAACCCTCACTGATACCGGTGTGGTGACCAACCAGGTGCCTACCGAGAACAAGTGCTCCACCGCCATCTGTCAGCACAAAGGGCTGGGCGGCAGCAGGACGACTGGGCGCGTGCCTGTCCAGAAGTGCCAAGCAGATTCCGTCCTGCTAACAGCGAGGATGGATTGCAGCCAAGAACGAGGGGCAGTGAAAGACTTTAGGAGAGAGAGCCAGCTGGGAGAGGGCAGAGGCACCTCAATGGCTAGCTATGCTCATCCTAAAGGACTCCATGCAGGGGTTCAGAGGAGGACCCAGGTAGGAGGCAGCCCCAAGCCCAAAGCAAGGGCTCTCGGAAGGGCAGACAGAGACATGGGTCTGGTCCAGGGGGAGAGGGCCAGGAGGCCTGCACCTCAGCCTGGGGAACTCAAAGTGGACTACAGGAACCTGAGTGGATCCTATGTTGGGGCTCAGATGATCCAGAGGGGAGGGCCAGTTGCAGGTCAGAAGAAGGACAGTGGACTCATTGAGCTACTGGATATGCTGGACATTGAGCACGAGTACAGCTTCTGCTCCCAAGCCGCACAGACTGCctacagacaggacacacagcagATGAGCCCAGCCGACTCATTCTCAGCAACCCCCACAAGGAACTTCTCTCGTCCTGCTCGTCCAGCTAATCAACGTCCTCCATCCAGGTGGGCTTGCTGTGCCCCCACCGCCTTGATCTCTGCCCCCTCCGGCCCAATTTCCCACCCCCCAAGCACCTTGGCACGCACTCCTAGCCCGATAGCAAGAACCCCAAGCCCCGCCCTGAAGCAGCAATCTTTCTGCTCCTATTTGCTCCACACTGAGACTGCCATTATGTGAGACACCTGCCCCACCCCCCTCTAAACCTTGCCTCCCCTCCCCAAATTCAACCCACAGGACTCAGATGACATAGTCCTGCCCTCTCTGTAAATACTAAAGACTGTTCCTTCTATCTGGCTTTAAAAAAGTGCTTTAAGAAATGTTCTATGAGATTACCCACATGACTGTGTATGTGTGGTCTATGAGAAACAGAATAGTTGACTCTTGTTCAGTCTCCAGTGTTACTGTGGCCTTCCCTTCTCCTGTGCCAAACTTCTTTAtgtcttttatttctttcactcTCTTAACTTCTCTACCTTTCTTTCTTTTGTATGGGTGATTTTGGATGGCTGTGTAAAATGTGATATAGCATGCCCCCTTTTACTTGCGGGTGCATGTCCCTTTATGTATGTTACTCAACCCTAATAAGTGCCATGTTGGCTTGTTTTTATAAATGGCCAACAAGTCAATTCAGAGTTGATCCTGTCCTGTCAACACAGAAGCAACATGCTAACTGTCTATAGTATGTTTTACTGTATCATATTATCAAAGTAACGCATTTGAAAATGTTCAAGTAACCATAGTGAGACATACAGTTATGACTGTGATGCTTTTCATGTCCTTTTTTCTCTCTTGATAAGAAATAAACACGACAATGCTTTGACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376328 lncRNA upstream 6764 22448764 ~ 22449123 (+) True G332431
TU376327 lncRNA upstream 8162 22446988 ~ 22447725 (+) True LOC118964449
TU376311 lncRNA upstream 13387 22442276 ~ 22442500 (+) True G332426
TU376306 lncRNA upstream 19580 22436044 ~ 22436307 (+) True G332421
TU376291 lncRNA upstream 20965 22429311 ~ 22434922 (+) True G332408
TU376330 lncRNA downstream 3112 22465135 ~ 22465370 (+) True G332433
TU376343 lncRNA downstream 17922 22479945 ~ 22480516 (+) True G332446
TU376344 lncRNA downstream 18704 22480727 ~ 22480976 (+) True G332447
TU376350 lncRNA downstream 29377 22491400 ~ 22492026 (+) True G332453
TU376357 lncRNA downstream 48497 22510520 ~ 22510782 (+) True G332460
XM_021600651.2 mRNA upstream 120 22449866 ~ 22455767 (+) True LOC110522329
XR_005051488.1 mRNA upstream 8221 22446889 ~ 22447666 (+) False LOC118964449
XM_021600648.2 mRNA upstream 22912 22420598 ~ 22432975 (+) True LOC110522328
XM_021600647.2 mRNA upstream 143588 22306958 ~ 22312299 (+) True LOC110522327
XM_036975909.1 mRNA upstream 193401 22219420 ~ 22262486 (+) True LOC110522322
LOC110522334 mRNA downstream 61024 22523047 ~ 22524502 (+) False LOC110522334
trnae-cuc-3 mRNA downstream 119935 22581958 ~ 22582029 (+) True trnae-cuc-3
XM_021600663.2 mRNA downstream 141135 22603158 ~ 22617811 (+) True gata4
XM_021600665.2 mRNA downstream 176279 22638302 ~ 22651343 (+) False fdft1
XM_036975921.1 mRNA downstream 178381 22640404 ~ 22651343 (+) True fdft1
TU375361 other upstream 754273 21688972 ~ 21701614 (+) True LOC110522308
TU375366 other upstream 767279 21683934 ~ 21688608 (+) False LOC110522308
TU374473 other upstream 1634730 20820668 ~ 20821157 (+) True G330771
TU373137 other upstream 2201976 20252767 ~ 20253911 (+) True G329626
TU373066 other upstream 2355831 20097356 ~ 20100056 (+) True G329556
TU376355 other downstream 36477 22498500 ~ 22498996 (+) True G332458
TU376404 other downstream 130907 22592930 ~ 22593362 (+) True G332507
TU377043 other downstream 493856 22955879 ~ 22958196 (+) True G333079
TU377442 other downstream 1283806 23745829 ~ 23748271 (+) True ccdc167
TU378192 other downstream 1371798 23833821 ~ 23834422 (+) False G334116

Expression Profile