RNA id: LOC110522334


Basic Information

Item Value
RNA id LOC110522334
length 1456
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110522334
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22523047 ~ 22524580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGGTGAATACTCACTGCAGAAACAAGAAAGCTGTCATTCTGGTCCACGCTCATTTTTGCAGTGTGTTTAAAGAAAATTCATTTTTGTAGGTGAATAATTTATCcaggtaaaaatgtatttaaacgtGCATTTCACGATCTGACAAAGGTAGCTAATTAGTAGTTAATTCCTGGGCTTTACACCGGCGATTTGCAATTTTCCCTTGGTTCTCTATCGAGTTTTAAAGTATTTTGAACGAGGATCCAGTTGGGAGCTCACCGAAATGACTCAGAATGACCTTCACTACATTGCCAAAGATTTGTATAgatagaacattgttctatatGTGACTGTACACCTGAGATATAACTTGCTAAAACACCAGCCTCTACTTCCTCGTCGTGTTGACACGTGGGTCGCGCGTCAGCAAGGCTAGCGCGAAGCCAGAGATGTTTGAAAAAGATGATCATTACATATACCGGGAGGCCTCGCATCTCATTCATTCCCATCTGCTGCAGGTCGGTCGCAAGATATTCTGTTTTATCGGAGTGGTGAAAAGGATGTCTGAGGAAGGGAAGCTTTTTGTGGGTGGCCTCAGCTTTGACACTAACGAACAGTCATTAGAAAATGTATTCTCCAAATATGGGCAAATATCTGAAGTTGATGAAATTAAAGACAGAGACACTCAAGGTCCAGGGGCTTTGGTTTCGTCACCTTCGAGAACCCAGATGAGGCCGAGGATGCTATGCTGGCCATGAACGGCAAGTCTCTTGATGGCAGACAGATCCGTGTCGACCAGGCGGGCAAATCTGGCGGTGGTGGCAGGTCCGGAGGCGGATTCCGAGGGGGCTCTTCAGGCGGTGGAGGAGGATACTTCCGTGGAGGCAGAGGTGGTGGAGACCGGGGATATGGTGGTGGACATTACGACAACAGAAGTGGAGGCTCATATGGATCAGAAAGAGGCTACGACAACAAATACAGAGCACAAGGAGGAGGATATGGAGATCGTTCAGGTGACGAGGGTGGCTGGTAGGACAGTGGCGCCTGTCGTCTGGGCTCGGCCCCGAACCCCGAACCAGCGGCCCCATCTCGATGACAGCGGACCTGGCCTGGCCTGGTCCTAGCCCAGCGCCTGCTGCTCCGCGACACTTTAAATCTTCTTCTGAAACCCACCATGTAGATAAGAGCAGTCCTGGATAAGTGTGGGGAGGGCTGGCTTGCACTCCGAGCCACCCACCACCTGTCTGTTccaagttttttttgttttttactttCTGATCCTCCTTATTTGTTATTGAAAATGAACAAAATTTTACATTTACAGTTTTTGTGGGGAGCTCGAAAGAGCAAGGCTCATGTGCTGTAGGCCTTTGCCTCACTTTGGGCTGTGCACAACCTGAAAGACAGGGAATGTATCTTGGATAGAGAATGGTAATGCAGTTGTAGTTTCAAAGCTCTGCTCTGTAACAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376361 lncRNA upstream 7963 22514868 ~ 22515084 (+) True G332464
TU376359 lncRNA upstream 10563 22512152 ~ 22512484 (+) True G332462
TU376357 lncRNA upstream 12265 22510520 ~ 22510782 (+) True G332460
TU376350 lncRNA upstream 31021 22491400 ~ 22492026 (+) True G332453
TU376344 lncRNA upstream 42071 22480727 ~ 22480976 (+) True G332447
TU376370 lncRNA downstream 5187 22529689 ~ 22529938 (+) True G332473
TU376371 lncRNA downstream 6280 22530782 ~ 22531079 (+) True G332474
TU376382 lncRNA downstream 23034 22547536 ~ 22548731 (+) True G332485
TU376103 lncRNA downstream 27951 22552453 ~ 22555318 (+) True G332227
TU376408 lncRNA downstream 76538 22601040 ~ 22601252 (+) True G332511
XM_036975912.1 mRNA upstream 61024 22455884 ~ 22462023 (+) False LOC118964450
XM_036975913.1 mRNA upstream 61024 22455887 ~ 22462023 (+) True LOC118964450
XM_021600651.2 mRNA upstream 67280 22449866 ~ 22455767 (+) True LOC110522329
XR_005051488.1 mRNA upstream 75381 22446889 ~ 22447666 (+) False LOC118964449
XM_021600648.2 mRNA upstream 90072 22420598 ~ 22432975 (+) True LOC110522328
trnae-cuc-3 mRNA downstream 57456 22581958 ~ 22582029 (+) True trnae-cuc-3
XM_021600663.2 mRNA downstream 78656 22603158 ~ 22617811 (+) True gata4
XM_021600665.2 mRNA downstream 113800 22638302 ~ 22651343 (+) False fdft1
XM_036975921.1 mRNA downstream 115902 22640404 ~ 22651343 (+) True fdft1
XM_021598354.2 mRNA downstream 134688 22659190 ~ 22664054 (+) False ctsbb
TU376355 other upstream 24051 22498500 ~ 22498996 (+) True G332458
TU375361 other upstream 821433 21688972 ~ 21701614 (+) True LOC110522308
TU375366 other upstream 834439 21683934 ~ 21688608 (+) False LOC110522308
TU374473 other upstream 1701890 20820668 ~ 20821157 (+) True G330771
TU373137 other upstream 2269136 20252767 ~ 20253911 (+) True G329626
TU376404 other downstream 68428 22592930 ~ 22593362 (+) True G332507
TU377043 other downstream 431377 22955879 ~ 22958196 (+) True G333079
TU377442 other downstream 1221327 23745829 ~ 23748271 (+) True ccdc167
TU378192 other downstream 1309319 23833821 ~ 23834422 (+) False G334116
TU378440 other downstream 1539329 24063831 ~ 24069676 (+) False si:ch211-51e12.7

Expression Profile