RNA id: XM_021600801.2


Basic Information

Item Value
RNA id XM_021600801.2
length 2607
RNA type mRNA
GC content 0.47
exon number 15
gene id lin9
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23509072 ~ 23525525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATAAATTCAGTCCATAAAAAATTGCCCTGCAGACACACTGTCCCAGAATGCATCTTGACAATATGGTCTTTGAAAAAAGCAGCGCGGCTAATTCAAGATGGCGGAGATGGACCAGCTAGACGAGAGCTCTTCAGCAGAGGCGCTAGTCAGTCTGAAAGAGGGCAGTCTGTCAAATACTTTGAATGAGAAACAAACAAAAGCTCACAACACGAGAGGAAGACACACCTTGGTGTCCATGGAAACGCCCACACGGAGCTCCAAGAGGAGCAGACTgttcagagaggaggaggagcagcgcCTCCCATCCAGATCCCCTAGAAGGAGCCAGAGGGTCACCTCTGTACCCCAGTTTGCTAATGTGACGACCCCAGATAAGAAAGTGTCTCAGAGAATCGGGCTGAGGTTGAGAAACCTTCTCAAACTTCCTAAAGCACACAAATGGTGCATCTACGAGTGGTTCTATTCTAACATAGATGGACCTTTATTTGAAGGTGACAATGACTTCTGCCTGTGCCTGAAAGAATCCTTCCCCAACCTGAAGACCAGGAAGTTGACCCGCGTGGAGTGGGGTACAATCAGGAGACTGATGGGGAAACCCAGACGGTGTTCGTCTGCGTTCTTTGCTGAGGAGCGGACTGCGCTGAGGCAGAAGAGGCAGAAGATGCGTATGCTGCAGCAGAGGAAGTTTTTCGACGTGGCACACTGCAAAGACCTCCCCGACGAGATCCCCTTGCCGCTCGTCATAGGAACCAAAGTCACCGCTCGTCTTAGGGGAGTCCATGACGGCCTGTTCACTGGGCAGATCGATGCCGTGGATACGGGCGCTGCCACTTACCGTGTGACCTTTGACCGGAATGGGCTGGGCACACACACCGTGCCTGATTACGAAGTGCTGAGTAATGAGCCCAACGAGACCATGCCCATCTCAACCTTCGCACAGAAACTGAGACCCTCCCGCTTCCAAAACTTCATGACCCCTCCCAGAGTGACCTACGCCTCCGCCACCACACCAGTCCTCATGGACAATGATCCCCTCATCAGCCAGTCTCCATGGAAAAACAAACTCCCTGGAGCGGACGGAGACACGCTTGGAGGGTTCCCTGTCAAGTTCCTCGTCCAAGTGACGAGGCTCTCCAAGATCCTCATGATCAAGAAAGAACACGTCAAGCACTTGAAGGATATGAACGCAGAAGCTGAAAAACTGAAGTCGTGCTCGATGCCTATAGGCCTAGAGTTCCAGAAGCGTTATGCCACCACAGTACTGGAGCTGGAGCAGCTCAATAAAGACCTGAACAAGGTGCTGCACGAGGTCCAGCAGTTCTGCTACGAGcTGGCCCCAGATCAGGGCATGGCTCCTGCGGACCGGCCCACAGAGCTGCGTCAGCGCTGTGAGGAGGAGGCCAAGGAGATGGTGCAGCAGACCAACACCCTCCGTGACGACCAGCAGTGCGTCTCCAACGCCAGCCTCACACACCTCATCTCAGGCCTCACTGCCTTACTGCTGCAGATCAAgTGTCTGGCTGAGGGAGGAGATCTGAACTCCTTTGAATTTAAATCACTCACTGACTCTCTGAATGACATAAAGAGCTCAATCGACCCCTCCAACCTCAGTTGCTTCCAGAACAACGTAGAGATTCACGTAGCccatatccagagtggtctgagtCAGCTGGGAAACCTACACGCCTTTGCAGCCAACAACACCAACAcagtctgaacacacacaaagaGTGCGGCCTGGTCAGCATCAACTAAGTGGAACATGCACACTATCTCGAGTGACTGTGAAAGAAGAGGTCGGTTTGTGGCCCCCCTGACTTTCAAACAAAAAGCCCCCACTGAAATGATCTGGCTCAACATGTAGGCTGTTTCGGAGGTTGTGGGGAAATATCCTTACTTTTCTCACAGCTGTCTGTCATCCACCTTTGATTTTATTGTATATATGTCTTTGAAAATGACTTGTTTACTGTAATGAACACAGACAAAATGTCATGTCAAacctaccctggtctatagactagACTTTGGTCACTGCAAGAATTCACAACACAATTTCTGTTGTAGATTTATTCTATGGTCTCATGTGCCAAACAGTACTTCAAGCAGTTTCTATTATAATCCATATTTATTTTTAAGAGTTGGTGATAAAACAAGATTTACCATTTGGAGCTTCCCTTTGTGAGTCAATGTTTTGTGTTCCTTTACTCCACTGGTAGTAAGCACAGGGTAGGCTAAAGAATGTTTTGTAAAATTGTTTATTGTAGATATTTGTACAATACCTTTGAGTACTCTGATTTATCGTTAACATTTCTGTAACATACTCAGAGATGGCTTTTGTAATTGTGTGCACTGAAgagattttttttgtatttttgtaaaaTGAGAATTCTGGTTTTTGATGCAGTTGACTCAAATTGATTGGCAGCCTCGAATATGGCATTGTTGAAGCATCAGACTGACATGTAACCCAAATTCAAACAATACTAAGGTGATAAATGTTTGTTTCCAGAATTTCTCCAGTCACTTTTTGTTTTGTAAATCTGTATATGGGAATTTGTACATATTCCTTGCTCTCATTTTATATTAAACATATAGCCAAGAAAA

Function

GO: NA

KEGG:

id description
K21773 LIN9; protein lin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377423 lncRNA upstream 25005 23483828 ~ 23484067 (+) True G333399
TU377422 lncRNA upstream 25368 23483468 ~ 23483704 (+) True G333398
TU377352 lncRNA upstream 104553 23400991 ~ 23404519 (+) True G333348
TU377316 lncRNA upstream 152058 23353922 ~ 23357014 (+) True snx9b
TU377250 lncRNA upstream 271644 23235319 ~ 23237428 (+) True G333252
TU377475 lncRNA downstream 60693 23586218 ~ 23586493 (+) True G333447
TU377480 lncRNA downstream 70904 23596429 ~ 23596646 (+) True G333452
TU377493 lncRNA downstream 94571 23620096 ~ 23620517 (+) True G333464
TU377496 lncRNA downstream 101571 23627096 ~ 23627335 (+) True G333466
TU377504 lncRNA downstream 111754 23637279 ~ 23637627 (+) True G333474
XM_021600799.2 mRNA upstream 2505 23494771 ~ 23506567 (+) True parp1
LOC118964414 mRNA upstream 17309 23489022 ~ 23491763 (+) True LOC118964414
XM_021598374.2 mRNA upstream 120502 23382192 ~ 23388570 (+) False LOC100136772
NM_001124719.1 mRNA upstream 120508 23382255 ~ 23388564 (+) True LOC100136772
XM_036975950.1 mRNA upstream 152054 23324438 ~ 23357018 (+) False snx9b
XM_021600797.2 mRNA downstream 4387 23529912 ~ 23538153 (+) False LOC110522421
XM_021600798.2 mRNA downstream 4387 23529912 ~ 23538153 (+) True LOC110522421
XM_036975961.1 mRNA downstream 16924 23542449 ~ 23719666 (+) False nhsl1b
trnaa-ugc-7 mRNA downstream 25232 23550757 ~ 23550830 (+) True trnaa-ugc-7
XM_036975965.1 mRNA downstream 105709 23631234 ~ 23719666 (+) False nhsl1b
TU377043 other upstream 550876 22955879 ~ 22958196 (+) True G333079
TU376404 other upstream 915710 22592930 ~ 22593362 (+) True G332507
TU376355 other upstream 1010076 22498500 ~ 22498996 (+) True G332458
TU375361 other upstream 1807458 21688972 ~ 21701614 (+) True LOC110522308
TU375366 other upstream 1820464 21683934 ~ 21688608 (+) False LOC110522308
TU377442 other downstream 220304 23745829 ~ 23748271 (+) True ccdc167
TU378192 other downstream 308296 23833821 ~ 23834422 (+) False G334116
TU378440 other downstream 538306 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378609 other downstream 892057 24417582 ~ 24418946 (+) True G334475
TU378607 other downstream 894589 24420114 ~ 24422731 (+) True G334473

Expression Profile