RNA id: TU377436


Basic Information

Item Value
RNA id TU377436
length 2726
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110522416
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23768487 ~ 23772991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCAAAACAGCCCTTGACAGTgcaggtgtgtgttggtgtttttGAGCAGGCGTGTGTGTTCTTCGGACACAGGAGAGAGCTGCCACCGCCGCACTCAGCCCAGTGGAGGACACCAAGgccagagtgagagaaggagagagagaagggacatagaGCCAGGTTGCTAAAAAATAAACTCCTCAGGGTTGTTGGAGAGTTGATCTGGTTTCTGCTGGGAAAAGGTTCTAGAGACCGCTAAGATGTTTTTCCGCATCCCTCGACTGACCCCTGGATACATCAGATACTTGCAGACTCAAGCTGCCCAGACCGTGCTGCAGAGCCGGGAAGGCCCCATGATGTCGAGGGTGGCCATGCTGCTCGGGCTGATGGGAGTTGGGATGTCTGGGTACAGCTCACGACAGCTCACCCTGCACTGCAAGCCCTCCGCTAACCTGCTGAGATGAGGCAAGACACAACACCTCTGACCTTCCACCCTGAAGACGACAACATGGATTAGATCGATCACTGGAGCATATCCAATACCCCTGGATTCCACTTACACTACAAGAATAATTAGTCTCTGTTTCCTAAAAAGGTTTTGTTTTAGTTGAGTTTTTTGTTTGTTACCCTTGCACCTTTGATTTCCCCCATTGTGGTTGAAGTTTGGGACGAACCAAGTTCAGATTCTTATTCTGAAGAGTTTAACATTGAAGATCGATACTTTAAGGTTCTACACGTGCAGTTATGACCATATAAGATTATCcctccatttaaaaaaatctatgttCTTTTAAACTACCTCTCCCTTTCAAACCAGTTAAAGTGTTATTCAGCCAACATACATCAATCCATTCTTATTGAGCTCTTAATGTTTTCTTGAGCTGGTAACATCCTCAACTTTAACCACCCATTTTCTTTTTGTAATTCTGTGCCTTAAATCCATTAAAATCAGTTTAAAACACCAAATGGTGTTACCTCACGCTAACCCAAGAAGACCAAAACCCAAGAAATAAAGACATCGCAATGGAGAAATATTAAATATGTCAAATATTTTTCAAAACCTGACGAAATTCCCCAGTCCGCCTGTTTATTGCCATTCTCTTGTCTCTGTTTGGCAAGGCATGTATACAGAGATTAGCACCTCTGTTTTAGGGAAGGTATCCAGTGTTTTCCTGAATAATGTCACGAGTGGCAGGAAAGAAGAGCGAAATCAAAATGGTAGCATCTTGGAACTCCGGGAATCCAGTTGGTCATAGGgattataaaaatgttttttgtcTGTTATCATCAATGCTCTTGATTCCTTCATTTGGTACTTGCTTTACTTTCTTTGTCTGCTATGTTTGCATGCAAAGAAATACAGGAAAAATCCTTTGACCAAGATTCAAAATGTACTCAATCGACCTGCTTCCAATTGTATTTTCTAATGTCTTTTTTTATTTGGTCAAGCCCAACTTTTTTCCATTGAACCTTTTTGATTTTGCACAGTGAAAAGATTGATATTTTTACATACATTCTTTTCACCAAAACACTCTGACACTTTGCACTTTTTtaagaatgtatgtgtgtgtacataatATGTACATAATGTACATATCTGAATTATTGAAGCTTGAAGAGATTAGTAGATGGTTAAGTGACATGGAAAGTGACGCCAGATTGGTTTGAGAACTAGTCTGGGTGGAATCCAGCTGGATTCACACACGGCACCACAGTTTGGTATCAGGCATCCAGGGCAGCCACCCTGGATGGACCTCACTGGACGAATGCCACCGTATGTGTGAATTCACCGAGATTCCTCCAAGTTGTCCTCCATGTTTGTCAGAATTGGGATGTTTAGATTAATGGCCACATGGTCTCTTAACATAGCTAGCATGAAATACTATTTATATTTCCTTTAGATTCAGAACATGCAGTACACACTTTGTAATAAGGGAAATAACTTTAACACGACAGCATATGAATGTATCACCGACACAATGAATGTTTCTTAGTGGTATACTGTAATTGTAAACATGAACgtactgtaggttactgtgtCATAACCATGGGATCCCACTAGTCTGGTTTAGAGGAAACAGTGGATGTAACCAGACCTTAGATttccactggattctccaatggAACAGATTACCATGCCGTTGGTAGTTGTCCAGTGATCCAGTGGTCTTCCGGTGATCCAGTAGTCTTCCGGTGATCCAGTGGTCTTCCAGTGATCCAATTAGGAGAAGTGTCTCTTTTATGTCCAGCTTCACCAGTATAAAGGGTTAGTGACCCTAAATAGTGACCCTAAATAGTGACCCTAaatagagaccctgctatagagACCCAGACCAGTGAGAGGAACATAGTAGGAGTTCTGAAACCCCTAGTTTATCTTAGTCAATGTAATGTTACATGAACTTGGTGAAGAACTGACACAGAATTCAATTGGGAACATGATTGATATTGAAAGCTGCAATGGAGGAGTGATGTTATCTCATACACAGTGTAATGGGTCATTGCTGTTTAATAATTATAGTACACTACAGTGCTGTTTGTTTTACATGGTTACATTTCATACCAAAAGGCTTACAATAGGCCTATCTTTGTGTTGTTGCTAAATGTAACAATGTTGTTTAGGAATGCCATAGTGAATTGAAGAATTATGACTGCTTCACAAAGCACCCTTGAATATCTATTCATGTTTATTGTTATGATACAGCATGTATCAATACTATGAATAAAAACCTATAAACGGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377558 lncRNA upstream 30347 23735093 ~ 23738140 (+) True G333528
TU377538 lncRNA upstream 83622 23684555 ~ 23684865 (+) True G333508
TU377537 lncRNA upstream 86935 23681353 ~ 23681552 (+) True G333507
TU377536 lncRNA upstream 88018 23680211 ~ 23680469 (+) True G333506
TU377534 lncRNA upstream 89164 23679107 ~ 23679323 (+) True G333504
TU378148 lncRNA downstream 35913 23808854 ~ 23809760 (+) True G334078
TU378177 lncRNA downstream 47640 23820581 ~ 23820857 (+) True G334105
TU378182 lncRNA downstream 52361 23825302 ~ 23825540 (+) True G334110
TU378190 lncRNA downstream 62696 23835637 ~ 23837875 (+) False G334116
TU378195 lncRNA downstream 62932 23835873 ~ 23836532 (+) False G334116
XM_021600794.2 mRNA upstream 20094 23745535 ~ 23748393 (+) False ccdc167
XM_036975960.1 mRNA upstream 48821 23666631 ~ 23719666 (+) False nhsl1b
XM_021600791.2 mRNA downstream 5670 23778611 ~ 23801507 (+) True si:ch211-225h24.2
XM_021600788.2 mRNA downstream 93799 23866740 ~ 23879587 (+) False acp1
XM_036975975.1 mRNA downstream 93799 23866740 ~ 23879587 (+) False acp1
XM_036975977.1 mRNA downstream 93799 23866740 ~ 23879587 (+) False acp1
XM_036975978.1 mRNA downstream 93810 23866751 ~ 23879587 (+) False acp1
TU377442 other upstream 20216 23745829 ~ 23748271 (+) True ccdc167
TU377043 other upstream 810291 22955879 ~ 22958196 (+) True G333079
TU376404 other upstream 1175125 22592930 ~ 22593362 (+) True G332507
TU376355 other upstream 1269491 22498500 ~ 22498996 (+) True G332458
TU375361 other upstream 2066873 21688972 ~ 21701614 (+) True LOC110522308
TU378192 other downstream 60880 23833821 ~ 23834422 (+) False G334116
TU378440 other downstream 290890 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378609 other downstream 644641 24417582 ~ 24418946 (+) True G334475
TU378607 other downstream 647173 24420114 ~ 24422731 (+) True G334473
TU379995 other downstream 2278112 26051053 ~ 26057691 (+) True LOC110522376

Expression Profile