RNA id: XM_036975978.1



Basic Information


Item Value
RNA id XM_036975978.1
length 969
RNA type mRNA
GC content 0.43
exon number 7
gene id acp1
representative False

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23866740 ~ 23879587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGGGATACATTCTATGTCAAAATAAAGTCAAAAGTTGATTTTAACCCTAACTATTTTTCTGACCTTAACCCAATTATCTCAAACTGCTACGTAAACCGCAAACTGCTACGTAAACCTACcgcgtaaattctcctaacctgctccGAAATATCAATTCTGACATAAActgtatcccttctagacaaaaTCGAGTGATACTGACATAAGACCCTAAAAGCAAAATGGCAGCCAGCAGTGGAAAATCTGTTCTGTTCGTGTGTCTGGggAACATTTGCAGGTCCCCCATCGCCGAAGCCGTCTTCAGGAAAATGGCGACAGATGCTGGTGTTGTTGACAAGTGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGCAACCCTCCAGACCACCGTGGTCAAGCCTGCATGAAGAAACACGGGGTGCCCATGAGGCATGTAGCCAGGCAGgTGACAAAGGAGGATTTTATGTCATTTGACTACATTCTGTGCATGGATGAGAGCAATTTGAGTGACCTGAAAAAGAAGGCAAACTCTGTGAAAAACAGCAAAGCCAAGATTGAGCTGCTGGGCTCGTACGACCCAGAGAAACAACTGATCATCAAAGACCCATACTACaacaatgagacaagaaaaaccctggaatgagtagGGGCATGAGGAAGACTTTGAAAATGTGTACGAACAATGTGTGAGATGCTGCAAAGTGTTTTTGGAAAACAACTCGTAACCAGACCCAAGATCTGACCGGTGAACATCCACCCAAACACTAGATGGATAGTAAAGAAACGATCCTCCGTTATCGTCCATAGTTGTGCAGTTACAATACACATCTGCCAGGTCACACTAACAGTAGTTCCCATCAATATGGTGTAGCAATCAGTTGATTGTCACAATCTACAATATGTCTGTAAAACAAACGGTTTACTGTACTGTGTCCTAAATAAAATGCTTTTTTTGAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU378212 lncRNA upstream 7390 23859068 ~ 23859361 (+) True G334133
TU378211 lncRNA upstream 8938 23857555 ~ 23857813 (+) True G334132
TU378191 lncRNA upstream 28876 23836050 ~ 23837875 (+) False G334116
TU378193 lncRNA upstream 28954 23835952 ~ 23837797 (+) False G334116
TU378247 lncRNA downstream 51301 23930888 ~ 23931256 (+) True G334162
TU378412 lncRNA downstream 134081 24013668 ~ 24013885 (+) True G334311
TU378413 lncRNA downstream 137150 24016737 ~ 24017204 (+) True G334312
TU378419 lncRNA downstream 138902 24018489 ~ 24024491 (+) True G334313
TU378433 lncRNA downstream 172124 24051711 ~ 24052073 (+) True G334325
XM_021600791.2 mRNA upstream 65244 23778611 ~ 23801507 (+) True si:ch211-225h24.2
XR_002473313.2 mRNA upstream 95747 23768489 ~ 23771004 (+) False LOC110522416
XM_021600794.2 mRNA upstream 118358 23745535 ~ 23748393 (+) False ccdc167
XM_036975966.1 mRNA upstream 147085 23666631 ~ 23719666 (+) False nhsl1b
XM_021600784.2 mRNA downstream 145347 24024934 ~ 24034274 (+) True LOC110522408
XM_021600783.2 mRNA downstream 172961 24052548 ~ 24060425 (+) False LOC110522407
XM_036975980.1 mRNA downstream 172961 24052548 ~ 24060425 (+) True LOC110522407
XM_036975444.1 mRNA downstream 182090 24061677 ~ 24063116 (+) False msgn1
XM_036975445.1 mRNA downstream 182090 24061677 ~ 24063116 (+) True msgn1
TU378192 other upstream 32329 23833821 ~ 23834422 (+) False G334116
TU377442 other upstream 118480 23745829 ~ 23748271 (+) True ccdc167
TU377043 other upstream 908555 22955879 ~ 22958196 (+) True G333079
TU376404 other upstream 1273389 22592930 ~ 22593362 (+) True G332507
TU376355 other upstream 1367755 22498500 ~ 22498996 (+) True G332458
TU378440 other downstream 184244 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378609 other downstream 537995 24417582 ~ 24418946 (+) True G334475
TU378607 other downstream 540527 24420114 ~ 24422731 (+) True G334473
TU379995 other downstream 2171466 26051053 ~ 26057691 (+) True LOC110522376
TU380919 other downstream 3013548 26893135 ~ 26894837 (+) False G336464

Expression Profile


XM_036975978.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XM_036975978.1 Expression in each Bioproject

Bar chart with 13 bars.
XM_036975978.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.