RNA id: XM_021600774.2



Basic Information


Item Value
RNA id XM_021600774.2
length 4300
RNA type mRNA
GC content 0.42
exon number 17
gene id tmem181
representative False

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 24138959 ~ 24148337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTCCGCCCCCTCGTTTTTTGTGCTTTTTCTTTAGACCTGCACGAACAAAAAAGCTTTGCCTGCAGTTTCAATTAAACGAGAGAACACAAAAGAGAAACCGGCATTGTTTTGTAAAGGCTGCGGATTATTTCCCATCGCCATTTTCAGAGCTCAGACACCGGCACGATGGACACCGACTACTCCGCCTTCGAAAACCCTCTATACAGTGAATTTAAATATTTCTGTAAGAAGATACAAGAGGTCTATAACGAATTAAAGGAAGACCTGACACCTTACCGCGACGATCGTTTTTACAGGCTAGCCCCCATGCGGCTCTACACACTCTCCAAAAGACACTTTGTTTTGGTCTTTGTGGTGTTCTTGATCTGTTTTGGCCTCACTGTCTTCATTGGTATAGCAGGTCCTAAAATCCTTGCGGAGACTAAATACAGTGGAGATGAACTGCTGGACAAAAATCAATCCATAAAGACTGGTCCCTTCATCCTGCAGTCCCCGCCCCTTTCCACCTATAACCAACAGCTATGGCTCACCTGTATAATGCAGGTGGAACACAGCACTGTGGTGGACTTCCTGCAGCACTTtgagatcaatgtggagctgaaGGGAGTCATGCAGGATGCCAGCGTCATGCACATCCGCAGCAACGTGCACCAGAAATCCCGAATGCTGCACTGTGGCGCTAAGTGTGATGAGATCATCGTGGTGCACCTGGGCTATCTGaattacacacagtaccagatcaatgtcaGCTTCAAAGGCCTGGAGAACATCACCTACGAAGTCAAGGTCAACTTCATGtggaAGATGTATAATCCCTCGTTCTCTCAAGTGGAGATCTGGTTCCGGTTTGTCTTTGTGGTTTTGACCTTCATGGTGACGTGCATGTTTGCTCACTCTCTGAGGAAGTTTTCCATGAGAGATTGGGGCATTGAGCAGAAGTGGATGTCCATCCTGCTGCCTCTACTACTGCTGTATAACGATCCATTTTTCCCACTGTCGTTCCTGGTTAACAGCTGGTTTCCGAGGACTCTGGATGCATTCTTCCAGGCCCTCTTCCTGTGTTCCCTGCTGCTCTTCTGGCTCTGTGTCTACCACGGCATCCGGGTTCAGGGAGAGAGGAAGTGTCTGACGTTCTATCTTCCTAAACTGGTCATTGTCGGCCTCCTGTGGCTCTCAGCAGTTACCTTGGGGATATGGCAAACGGTCAATGAGCTACAGGACCCCACCTACCAGTACAAAGTGGACATCGCTAACTTCCAGGGCATGAAGATTTTCTTCCTGGTGGTGGTGACCCTGTACGTCCTGTATCTCATCTTCCTCATCGTCAGAGCTTGTTCTGAGCTCAAGAACATGCCCTATACCGATCTCCGGCTGAAGTTTCTGACTGCGCTGACGTTTGTGGTCCTGGTAATAAGCATGGCGATACTCTATCTTAGGTTTGGTGCCAAGGCTTTGCAAGACAACTTTGTGGCTGAGTTGTCAACCCATTACCAGAACTCAGCTGAATTTTTATCTTTCTATGGATTACTCAACTTTTACTTGTACACATTAGCATTTGTGTATTCCCCCTCAAAAGACGCCATTTATGACTCCCAGTTGAAGGATAATCCTGCATTCTCCATGCTCAATGACTCAGATGATGAAGTCATATACGGGAGCGATTACGAGGAGATGCCTTTGCAAAATGGCCGTGCCATCAAAGCAACAGCCAAGTACCAGAATGAGAGCGACAGCGACTGATCCATTCCTGATTGGTGCGTCATTCACTCCCCTGTTGTCCTGATTGAATCCTTGAGGGGATTCTATTAAACTGGCCCGGTTTGCACCTGGCAGTGCCCATCACGTGACCGGGTGAAGACTGTGAGGGAGGTGAACCCTTCTCAAAATGAATAACTTatcaaaaaaataacattttaaactagttttcattgggaaggcagatagATTTTTAATCAGTCACTTTTGCTTGTGaacacagaatcctactcatCACTCCACGTGCTTAACCTACgtcacttttttttgttttgagcTGACTTTGCTGTCGGCCAGAACGGCGCACCCGGCTCATGCCCGGGAAGCACCCCGGTCACAAAACGATTGCAATCACTTTTCACCCGGTGCAAACTACGCCTGCCTGGGCTAGCCTAATCGAATCCCCTCATTGGACAGCATATTCAACGAATGAACCACCATTTGTAAATAAGGAACGTTTGCAGAAATAATGCAAATGGTAATATACTGTAACTGTTAGGGTTGTGAAGGTCATTGAATTTTGAATGATggtaattggccagccaaatgaccgcGGTCTCTGTAATaactgtttttgtttttacacACATTTTTCTCCTCCTTcgctcctgactgcatgtgctgccatagaaatGTAATTACTTATTTTTCTGATGCATTGTGGGGGAGTTTGCTAGTTTCTTATTTCAGCAAGGAGCGAAAAGGTTTCATCACGTTAAGAGTACATGTTACCGCAGAAACGGACTCAAATGCACGAATGCCCGGCCGTCCCGTCTTGGCGGTCTTCATCCACAACCGTTGGTTACGCGGTTAtacggtaattgtgccagccctagtaactgtacataaatatattttttaactgaaAAATTGTGTATTCTGAATGTAAATTCAAAGAAAGGAAAGGTGTGCAGGTATGGTCAAATGTTTTATAGCATTTTAGTCATCAAGTAGCCACATAAACAAACGTTCTGTACACTATCTTTTGGTTATCATGAGCCGCATATCATAATTCTTGGATATATAAATTAACTTTGAAGGAAAGCGTGACAAATTTGATCATGGGATTTATTATTTATACAAAAATCACAATGTAACTAGTGTTAAACCACTACTGTCTCTTTTGTgcttgaaatgtgttgtttttaagCCATTCCTACTAAGCTCTCTGGCATTCTGAGTTTGAGGGGGGGGGTGGTGTAATTCTGCAAAAAACATACCATGCTGCCACTGTTTTTATCCAAGACCTTTATCTCAAATGGTTGTAAAACCAGTTTAGAACAGCAATTCACTGTTTTATGCTTGTCATATACTCTGTTAATAGCCAGAGTATAAGCATGCATATCCATCAATCTAATACCCATAGAAGTGAAGTTTTCTGAATATTTACCGGACTACCACCATGCGTTACAATAACCAGCAGGAAGAACCTTAACTTGAGTAGGTGTAGCAGTTGACCCACTCTTTTGCCAATCCATTCCTAAGTGAAGCCACTGTATGATTGTACTCCTGGTGTCCAAATCGTATGTCATTTTTGCCCCCAAAAATTATGGCCCCATTTGTTTAATAGCTATGGAAAATGTTTTCAGTTCACATTCCCGAAGCAATAGTCTAGACTTAAGATATGGATGATTCCTGAAGTTCATTCAAACACTTCTAATGCTTAATCATTTGATTGTGATGTCTTGTGAAATGTGTATTGTGAAATATTAAAGCagtggtgtcaaactcattccgtggagggcctagtgtctgcaggtttttggtttttccttgcaattaagacctagacaaccatgtgtggggagttccttactaattagtgaccttaattcatcaatcaagggaGGAAAGAAAACCCACAGCCACTCGGCCCTccctggaatgagtttgacatctCTGTGTTAAAGGAATACTCAAGTAGCATATTTGTCATATGGCCCTTCCATCGTTCAATTTAGCTTGCCTTTCAtagcttttattttttgtttactTCAAAGGTACTTGGGCTATATGTAAATTTCATTTGTACAAATTAACCAAATAATAACATTCTGGATTATTGTtttgtacctttttttttttttctgtactCAATAACCTGATGCAGGATTTTATGGATACAGGCTCCAGGAGGCAAGTTAGTTTTCATCACTAACCATTGGTAATTTTCTGTCTGAACCAAATGAATGAAATGTTTGTGTTGAAGGAAAGCGTTACCACTGATCCTCCAAACATGTATTCTAATAAAGATGGTGCCTTGTTTCCACTTTGTACCAGGGTCAGGAGTTTCCTCCAAACTTGGACTGCAGTCTGAAATCTTTTTGTTTGTGATGGAGCAtctactttatatatatatatacttgtgGCTTATAGGGAGATGATTGTGGTGGTTATTTTGAGGTTTGAGTAAGAACCATGATTTTCTTTATGGTAGACTCTTTTGACTAAATTAGAACGGCACTCTGTAAATACTGTATCACATGTAAATAAAGCACTTGTGTATACAGCAAATGTTCATTAAAACTTGTAAATTATACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU378447 lncRNA upstream 411 24134554 ~ 24138548 (+) True tulp4a
TU378443 lncRNA upstream 69198 24067561 ~ 24069761 (+) True si:ch211-51e12.7
TU378441 lncRNA upstream 69283 24067561 ~ 24069676 (+) False si:ch211-51e12.7
TU378433 lncRNA upstream 86886 24051711 ~ 24052073 (+) True G334325
TU378419 lncRNA upstream 114468 24018489 ~ 24024491 (+) True G334313
TU378496 lncRNA downstream 7384 24155721 ~ 24159410 (+) True G334369
TU378506 lncRNA downstream 18114 24166451 ~ 24183626 (+) True G334375
TU378548 lncRNA downstream 107173 24255510 ~ 24256286 (+) True G334414
TU378551 lncRNA downstream 117676 24266013 ~ 24266674 (+) True G334417
TU378575 lncRNA downstream 152559 24300896 ~ 24348001 (+) True G334441
XM_036975984.1 mRNA upstream 410 24082855 ~ 24138549 (+) False tulp4a
XM_036975985.1 mRNA upstream 410 24082855 ~ 24138549 (+) False tulp4a
XM_036975981.1 mRNA upstream 65996 24063831 ~ 24072963 (+) False si:ch211-51e12.7
XM_036975982.1 mRNA upstream 65997 24063831 ~ 24072962 (+) False si:ch211-51e12.7
XM_021600779.2 mRNA upstream 69274 24063832 ~ 24069685 (+) False si:ch211-51e12.7
XM_036975988.1 mRNA downstream 35628 24183965 ~ 24396666 (+) True syne1a
XM_021600764.2 mRNA downstream 285798 24434135 ~ 24443445 (+) False zbtb2b
trnal-uaa mRNA downstream 496887 24645224 ~ 24645306 (+) True trnal-uaa
XM_036975991.1 mRNA downstream 499688 24648025 ~ 24989137 (+) False utrn
XM_036975995.1 mRNA downstream 525704 24674041 ~ 24989137 (+) False utrn
TU378440 other upstream 69283 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378192 other upstream 304537 23833821 ~ 23834422 (+) False G334116
TU377442 other upstream 390688 23745829 ~ 23748271 (+) True ccdc167
TU377043 other upstream 1180763 22955879 ~ 22958196 (+) True G333079
TU376404 other upstream 1545597 22592930 ~ 22593362 (+) True G332507
TU378609 other downstream 269245 24417582 ~ 24418946 (+) True G334475
TU378607 other downstream 271777 24420114 ~ 24422731 (+) True G334473
TU379995 other downstream 1902716 26051053 ~ 26057691 (+) True LOC110522376
TU380919 other downstream 2744798 26893135 ~ 26894837 (+) False G336464
TU380920 other downstream 2744798 26893135 ~ 26894837 (+) False G336464

Expression Profile


XM_021600774.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_021600774.2 Expression in each Bioproject

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XM_021600774.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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