RNA id: XR_005051501.1


Basic Information

Item Value
RNA id XR_005051501.1
length 3318
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118964454
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 25028611 ~ 25060710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAACTGTATATCCGAGTCACAGCACCATTATAATGGATGTCATgctgcttgcttagcgagtatCACTTCCTCCTGATCCGACTCACTCTGAGGCTCAACACAGGACCTCTTCCTTGCTAGCACACATGACCGCTCTCTCGAGGCCTCTTACCAGTTGGCGCCACCGAGAAGTTCCTGCGGATTGCTAGCATTAGTGGATCATATTAAGCTAATGTTGTGCAATaatatgtagcctatttgaatcattatggaagTCAGTGTCACGCTCGTCGATGGAAGGATCGGACccaggtgcagcgtggtaggcataCATGTCACGATTTCTACGaagATCTCCTGGTCCAGCCTGATATCTCCATGACTCAATAGGAGGGGTCTCCAGGGGCCACCAGGAGCCTGAGGTGTTCAGGGGCCACAGCTTCACCCTCACTTATTCCACTCAGCCACAGTACCAGGAGGCTCCTTCCTCCTCACGTTCACCAGCTCCAACAGCTCCAATTGTCAATCACTctgctgccttcctcttccctgcTGTAAATTACTCCCACCAAAGGAATTACAGCTGTGTTTATGAGAACTGTTTTCTCTCTCAACTTCTACTCTGAGAGTGAGTTCCTCTCCCTCACAGCCTCTCCTCTGCCCACCTTCATCATCAGACATGTTGTAATGCTGCTGATCCTACTGACAGCCATCACTGCCTTCTACCTGTACTTCAAGACAATAACGTGTGGTGCCTGGGCTTCTTTCTGGAGTGGATTCTTGGAGTGAAACATAATTAATTGTAGCAGAACTGTGAATTTAGAAAATGCCACGTtattaaaacaaatgtttttctcATTAAGTAATCCATCAGTGTACCCCACCATCAGTGTACCCCACCATCTTATCTGTTTCTTCTCTCAATGTGTCTCTCAAAGTGTCCACCCCAAAGTGCTGCATGTCATGATGACAGACACCTGTCTTGATCAATAAAATACTTTAAATAGACAAGATGGCGGTGTACACACTGTTGGATTACTTCCAGGAGCAAAATAATTAATTTCTAAAATCAAACCCTGCAACTGGACACAGACATTTTATGAGACTCCTGTTTCTAAGACAGCGTCGCCAAGCTAAGGTTGGTCAAATTCTCTGTGCTACACCAAACAGTACCCATCCTGTAACTCCAATTAATGGATACTAAAAATCTTAGGTTGAATCACATTATCTTTTGTAACAATCTGTAGCTACAGTTCTCTGCACTTTACTACACCTGAGACGCACTGAACTGTACTGCACAGTTCATACaaaaaatacagtatgttactttTACCATATAACATCCTTGTTGAGTACCCAGTTATTTTTCAGTTAGCATTAAATATTGTAGACTCCGTATTTTAGTTTGACAAATACGCATAATTTGGATATCTCTGAATGGCTAACATCTGTTTGATGCTACATAACCCTGTACGGCTTATATAAATATCTTCTATAAATCTATAAAAGCAGACACATTTTGGGGATTGATCGAAAATATCCATATGAATTGTTTTGGTCCTGTTTCTGCTAAGGGTGGGCTGTGGAAGCCGAGTGCTTGTGGCGAATGCTCTTGTCCCGTCTGAGGTGTACGGCCAGCTAGATAAGACTGCCGAAACCGGTGTAGAGCTTGTAGACCTTAACCACCAACTGTTTGGACCTCTTCCAGAAGATTTGCTGGTACTGCACGTGTCCTGGAAAGACGTGGTTGTGGTGTTACCATTTTACACTTTTTGTGGAAGGGTCGTAGGGCAACACACCTTTGTTGGTAAAGATGTCAACCGATTGGTACCTAAGTGTTTACATAGACTAGTGCACTGTTTAGGGACAATGAGGGACATTGGGAGCTGCTTTGAGAAGAAAGATTAGTCAACAAAGGACTCCAGATAACTTGAGTGTTACAAAGGGAAAAGATAAGAAGAGAAAAGGTGGAGACTAAATTGATTACATGTTCTGGAAGGTACTCTGTGGTCCTCAGGCTACATCTAACCGCCTGTAACCCCATAACACAAAAAAACTACTTACAAATACTACCCAAATCCCGTTTATGCCATGCTTACAGTAAATTGAGCTATAAACATTTTTACCAACTTACCTTCACCTTGTGCAGAGCTTCAGGATGGAAACACATGCTTGTTGAATGAGATTATGTACTACCTCCAATACAACAAAACGCACAACAATACACAATTTAAGCACCCCACTAGTTGTATTGATCGCTATTAGACTGGCTAGCTTAGCACATCTAACATGGACATTTCAATATTTccagcttgctgttagctagttagcgagATTGCTAGCCAGCTAAATTGGCGGCaagattgtcacaccctgatctgtttcacctgtctttgtgcttgtctccaccccctccaggtgtcacccatcttccccatgatcccctgtgcatttatacctgtgttctctgtttgtctgttgccagttcatgttgtcttgtcaagcctaccagcgtgtttTTCGTACTCCTGTTTCCTTGAGCCCCTGTTTTCTAGTTATCCAATATTTGATAATTCTGCCTGCCCtgctgagcctgcctgctgtcctgtaccttttgCCACTGccttggattactgacctctgcccgACCCTGAGCCTGCATGCCGCTCTGTACCTTACGGACTCTGCCCTGGACtaccgacccctgcctgcccttgacctgtccttTGCTTGCCCCTGTTTTATGTAATAAACCTCCGTAATTCgacctgtctgcatctgggtctttccTAAGCCGTGATAGAGAGGGAGTTAGCTATATCGACAATTGATTTTTCATAACAGTGTTTTCCAGACAAGAGTAGAATAGATTGAGTTACTCATATTTGCTTAAATTAGCCAGCTTACATTAGCTACCGTTTGTCAAAGTTATAACGAACAGACAAACATGTTTACTTTGCTGAAGGTAGCTACTGTACCAGTCTAGCAATGACTACCAGGACTGTAACATTAGCTAACATATCTAATTTACCTAGTCCAGCTAACATTGTGACATCTAACTGAGAATTGCACCACTTCTCAGCTGTCATTGTTTAGAATTAGCACAGCCAAACAGAACACCACATAGGCATGTTGACAAAAATTagtgaaaaacaaacattttcaaaATAAATGATGAGATGACTATGTGCTGGTCATCTGAACTAATCAATGCCATGAACCAAGCTTGTGGTTCATGGCAAACTGGCTCTCATTAGGatcgccacaggaatggaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcagatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379643 lncRNA downstream 2478 25007009 ~ 25026133 (-) True G335365
TU379688 lncRNA downstream 6320 25021452 ~ 25022291 (-) True G335410
TU379642 lncRNA downstream 24715 25003479 ~ 25003896 (-) True G335364
TU379676 lncRNA downstream 26996 25001386 ~ 25001615 (-) True G335398
TU379675 lncRNA downstream 27434 25000945 ~ 25001177 (-) True G335397
TU381454 lncRNA upstream 135415 25196125 ~ 25198230 (-) True G336939
TU381493 lncRNA upstream 198416 25259126 ~ 25259333 (-) True G336977
TU381614 lncRNA upstream 370209 25430919 ~ 25431315 (-) True G337093
TU381684 lncRNA upstream 469780 25530490 ~ 25530847 (-) True G337157
TU381688 lncRNA upstream 473171 25533881 ~ 25534162 (-) True G337161
XR_002473307.2 mRNA downstream 384247 24639723 ~ 24644364 (-) False LOC110522390
XR_002473308.2 mRNA downstream 384247 24639723 ~ 24644364 (-) False LOC110522390
XM_021600755.2 mRNA downstream 399345 24624615 ~ 24629266 (-) True LOC110522391
XM_021600754.2 mRNA downstream 399351 24624615 ~ 24629260 (-) False LOC110522391
XM_021600756.2 mRNA downstream 399929 24624615 ~ 24628682 (-) False LOC110522391
XM_036976000.1 mRNA upstream 25201 25085911 ~ 25105555 (-) True epm2a
XM_036976001.1 mRNA upstream 74875 25135585 ~ 25139959 (-) False LOC110522383
XM_021600743.2 mRNA upstream 74875 25135585 ~ 25140428 (-) False LOC110522383
XM_021600744.2 mRNA upstream 74875 25135585 ~ 25140437 (-) True LOC110522383
XM_036976016.1 mRNA upstream 1125696 26186406 ~ 26211003 (-) False LOC110522375
TU378956 other downstream 1004108 24018472 ~ 24024503 (-) True G334789
TU378351 other downstream 1089242 23938272 ~ 23939369 (-) True G334252
TU377905 other downstream 1640041 23387061 ~ 23388570 (-) True G333842
TU376848 other downstream 2364704 22659885 ~ 22663907 (-) True LOC110522343
TU376814 other downstream 2530882 22496923 ~ 22497729 (-) True G332867
TU381674 other upstream 449800 25510510 ~ 25512780 (-) True G337147
TU381735 other upstream 573007 25633717 ~ 25634063 (-) True G337207
TU382477 other upstream 1706664 26767374 ~ 26770165 (-) True G337894
TU383524 other upstream 2669698 27730408 ~ 27756987 (-) False LOC110522434
TU383525 other upstream 2669698 27730408 ~ 27756987 (-) True LOC110522434

Expression Profile

XR_005051501.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

XR_005051501.1 Expression in each Bioproject

Bar chart with 19 bars.
XR_005051501.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.