RNA id: XM_021600743.2



Basic Information


Item Value
RNA id XM_021600743.2
length 3891
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110522383
representative False

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 25135585 ~ 25140437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAAATGATACAAGTTGCTAATTTCAAGTTGCTAATCAAGAATCGCATTACTACCTAATATCAAAAAGTGGTATGAAGATATGGTATACGATTACTTAGAGATGTAATGAGAGTAGTTTTATGAAAACTTCACAGGCCAAACTTCCTAGGTTGAAGATGAATTAATTTTTTTGACCTATCTCGCAAACTTCTATAAGAAGGAAGGAACACCCCGACCCACATGACAACCATTGTCCAATGGGAACACACATCCCAAGGATCATCTCTCAGTTTAGAATAGAGGGAGAAGCAACAGCGGACAACGCATAGGGAGGTTGGTTGAaagacaagacaagaggagagatgTATAGGAAAAAGTTGTTTACATCTATTTGTAACTGTAATATGAACGGACACGTAGCTGGATTACTATAGTCGTGGAGTTTGAGCAATCGAGTCACGTCAACGCTACGAAACTCCACTCCCCCTCTTCTTAAAGATGGAGCTGCAACATACCCACTGTGTGACCTGCCTGAGTCAGAGGTGCATGACCAGGCCTGAACCTGGTATCTCCTGTGACCTGGTCACCTGCCCCTTGGTCTGCGGGGCCATTTTCCACATCTGCAAAGGACCCGAGCACCGCCTCCTCTGCCCCCTGGAGAGGGTGCCCTGCCTGAACAGTGGCTTTGGCTGCCCTGCCACCCTGGTGCGGACCCGGATTCCCGCGCATCTGGAGGTGTGCCCAGCGGGCGTGGTGTGCTGCACCATGGAGTGGAACAGATGGCCGATCAGCTGCCTGGACTACACCTCATACGAGAGCCTGAGCTGGGGGGTGGAGGAGACAGAGCAGCTGGACATGGCGCTCGCCCTGCAGGACCAACACACACTGATCGAGTCCCTCAAGGTGGTCGCCATGGCGCCCACGGTTGAAAGACAGCCAACGGTTGTCGCCGTAGAGAGTGAGAAGGACACTGCTTCGGACTCAGCTGTGCTGGTGGTGGCCGACCCTATAGCTGCCACTTCTGAGTCACCACCACCATTGACGCCGCAGTCACCGCCACCATTGACGCCGCAGTCACCACCACCAATGACGACGCATTCACAACCACCATTGACACCACCGCTGGGCTCAGCAAAGGATAAAATTGCCAACGGAATAAACGGTTTGAACGAGGAGCGGTATAGCAAGCTGTACGAGGCCACAGTGGAGACGGCGAGGAGCCTTGCCGCCGCGTTGGACGTCCTCAGCAGCGCTAACAACACCTCTGATAACAACACAGAGCAACACATCAACGGAGGAGCAGTGCTGGAGCCTCAGCATAGCGAGAACAGCAGTGACAGGAATGAGGAGCTGCTGCTTCACAACAGACTGGAGGTCAAAGGTCCTGTAGCTGAGGGTGTGAATTTGAAGGAGTGCTATGGACAGCTGCACCAACTCCACCAGGCTACAGTCCAGCTAAGGAGGAGCCTGGTCACAGCCCTGGGTGACCTCGGCAACACAGTAAAATACACAGACCCAATCAATGGAGCCCCCTCTCACCCTCAGGCGGAACCTAACAGCAGCTTCCACCAATTGGAAGATGCAGACTCAATTAATGTTGAGATGAAAGATGCTGAGGCAGGATCATCAGTCGGACCGCTGAGAGTGGTCAGCAGAACCGACAGTGAGGTTGCCATGAATGTTGTTGCTGATGGCAACATGCAGATGGAGCTTTTAGGTAGGGCCTCAAAGAGTATTgaggggatggatggacagagCCTATGTAATGGTTGTTTGAGTGGTGAAGGCTCCCAGAAGAGGCCACAGGAGCAGGTCTTAGGTTCAGATTCAGCAGACCAGCAACAGCCTGGAACCAGTTGGTCCACCAGTGAAACAGTATGCCTAGTCAAGGTGCAAGATGACTTGAATCTGTCACCTGTGCCTCAAGGGtcctgtgtgtctcagtcacagACACAACCCCAGTCTCACCCAGACCCTCCACTAGCACCACCCCTGCATATCCACCAGGGTATTGCACACAGGGCCAGCCACGTGGTCCTAGAGGACAGAGGGCTGGAGAGGAAGTTCCAGAACCACCAGTTGCTCAGAGGCTTGGGCCAGTTTGCTCTGTCCAATGGACGAAGGGTCCGGGTTAGGTTTAGACCCAAAATGGAGGACAAGGCAGTGGATACATCAGACCTGGAGCAGGAGGACGACCCCATGGGCCTGGGGGAGATCGACCTGATCACAGCAGCCCTCCTCTTCTGCCTGGAGGAGTCTCGCAAGTGCCGCAGGATCTCTGAAACGACCTATGTAGACGGCTTCCACGTCGACTTCGGCACGCAGACCTTCACTTTCCCAGCGGCCATCTTGGTGACCAGCACAAGGGTGGGCGACGTAGCGTCTGCGGCTGCCTGCGACCACGCGCCCCAACTATCCTACCCCAGCCCCTTCCGCACCCTCCGCCTGGACCTGGTTCTAGAGGAGGTTCCACAGATCCGGAACATGCCATGTAATCGTCTCCAGCAAATGTTCTCCTTCGTTTGTGGCCAGCTGTTCCGCAGGGATGAGTACTCCTCCCACTTCAAGAACGTCCACGAGGACATCCACGCGGGCCTCAACGGTTGGATGGAGCACCGCTGTCCCCTGGCTTACTACGGCTGCACCTACTCCCAGCGCAGGTTCTGCCCCTCATCCCAGGGTTCAAAGGTCATCCATGACCGGAACCTTCGGTCATTTGGGGTGCAGCCAAGCCCCGTTGGGGGGGAACCATTGGGCGAGTCCCAATCAGACCAGTTCAGTGGGCTTCCCTTTGAGGTGCTGGAACATGTGGCCCGCTTCCTAGACGGCTTTAGCCTGTGCCAGCTGTCCGTGGTGTCGCGGACCATGAGGGACGTGTGTGCTAGCCTGCTGCAGTCCCGGGGGATAGTGGAACTACGGTGGGAGAGGAGGCAGTACCCAAACGGAACCTTCTCATGGCAGATCAAAGACAGGGTGTGGAGATTCAGCACTGCCTTCAGCCCCGTTAGTGAGTGGCGGTTCGCCGAAGTCTCCAGCATGTCCGACCATCTGAGGACGTGCCGCTACAACACCGTCGAGCGCAAGATGGAGGCTGTTCCACTGCCGTCCATGTGCACAGCCAGAGACcgatccctcctctccatcttgaAACTCCAGGAGCAACACATGACCTAACCTCTGTTAGCTACACTGTGTAATTTAATACCATAGGTTTTGatgttacatgtatttttttatattgaaaaataatgtgggagaatctcaattgcatactacttgtgtcctctccttctcaaaacccattggaggagaaggtcagagaggagggacctctggctttctcatccaatgggttttgaggaggagaggatgtcAGCAGTATGCATTTGAGATTCTCCCTGTGTCCCGTGTTGTATGACGGTTGAAGAAGAGCCTTAATGTATGAAATAATACTTGATCTGCTTGACACACGGTTACAGTAGGTTTCTTGACCTGCAATGTATCCATACTAGATGTAAATTAGTACTATTTAACTTGCATGGTTTGTTGGTGTTTAAATCGTGCCCCTATTTTGGTAACATGATTTTCTTGGACAAATACTGACTATACATAgaaagaaatataaatattttcacTGTCTTGCCTTTCAGCAAGTTATTTTCCATATAGCACTTTAATGACATGTGCAAGTCCCTGGTCACTCTTACACCAATGTACCAAAAGCATCCTCATTTAAATGAATATGGTGGGGATCAATATGTGATATGTGCAAACTGGACTTGAAGGACCAGTGGGTTGGACCAGAAAGTGACCACAACACACAAAGGAAGAGAAGTCATGCGTGGCCACATGGAGCTGTCCCAACAATGCATGTGATTTTGTTGCTGTTTAATAAAATGAATCTTCAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU379713 lncRNA downstream 75536 25058439 ~ 25060049 (-) True G335434
TU379711 lncRNA downstream 83968 25051317 ~ 25051617 (-) True G335432
TU379703 lncRNA downstream 90432 25044893 ~ 25045153 (-) True G335424
TU379698 lncRNA downstream 98541 25036603 ~ 25037044 (-) True G335419
TU379697 lncRNA downstream 99995 25035215 ~ 25035590 (-) True G335418
TU381454 lncRNA upstream 55697 25196125 ~ 25198230 (-) True G336939
TU381493 lncRNA upstream 118698 25259126 ~ 25259333 (-) True G336977
TU381614 lncRNA upstream 290491 25430919 ~ 25431315 (-) True G337093
TU381684 lncRNA upstream 390062 25530490 ~ 25530847 (-) True G337157
TU381688 lncRNA upstream 393453 25533881 ~ 25534162 (-) True G337161
XM_036976000.1 mRNA downstream 30030 25085911 ~ 25105555 (-) True epm2a
XR_005051501.1 mRNA downstream 74875 25028611 ~ 25060710 (-) True LOC118964454
XR_002473307.2 mRNA downstream 491221 24639723 ~ 24644364 (-) False LOC110522390
XR_002473308.2 mRNA downstream 491221 24639723 ~ 24644364 (-) False LOC110522390
XM_021600755.2 mRNA downstream 506319 24624615 ~ 24629266 (-) True LOC110522391
XM_036976016.1 mRNA upstream 1045978 26186406 ~ 26211003 (-) False LOC110522375
XM_036976017.1 mRNA upstream 1045978 26186406 ~ 26211003 (-) False LOC110522375
XR_005051507.1 mRNA upstream 1048643 26189071 ~ 26211003 (-) False LOC110522375
XM_036976018.1 mRNA upstream 1048887 26189315 ~ 26211003 (-) True LOC110522375
XM_021600723.2 mRNA upstream 1142180 26282608 ~ 26327662 (-) True cdc40
TU378956 other downstream 1111082 24018472 ~ 24024503 (-) True G334789
TU378351 other downstream 1196216 23938272 ~ 23939369 (-) True G334252
TU377905 other downstream 1747015 23387061 ~ 23388570 (-) True G333842
TU376848 other downstream 2471678 22659885 ~ 22663907 (-) True LOC110522343
TU376814 other downstream 2637856 22496923 ~ 22497729 (-) True G332867
TU381674 other upstream 370082 25510510 ~ 25512780 (-) True G337147
TU381735 other upstream 493289 25633717 ~ 25634063 (-) True G337207
TU382477 other upstream 1626946 26767374 ~ 26770165 (-) True G337894
TU383524 other upstream 2589980 27730408 ~ 27756987 (-) False LOC110522434
TU383525 other upstream 2589980 27730408 ~ 27756987 (-) True LOC110522434

Expression Profile


XM_021600743.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_021600743.2 Expression in each Bioproject

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XM_021600743.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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