RNA id: XM_036976021.1


Basic Information

Item Value
RNA id XM_036976021.1
length 2068
RNA type mRNA
GC content 0.59
exon number 10
gene id LOC110522372
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26327551 ~ 26465676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACTAGCATTTGATTTTGTCTCATTATCTGAATCTGAATCGGTCCCGTACGAAACGAGGGACTCCACGGTGGCAGCCATCTTGGATGTTGTGAATGTCCAACCGGAAATGTCTTAAAAgTGTGGTAGCCGTGGTCTCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACAGTGCTGCCGCGGGCCATTAAGAATGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAACGTCATACGGCAGCTCAGCAGCCTcagTAAGTATGCAGAGGACCTGTTTGGGGAGCTATTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTGCAGGAGCGCGTGGACCGCCTCTCTATCAGCGTCACACAGCTAGATCCTAAAGAGGAGGAGCtatccCTCCAGGACATCACTATGAGGAAGGCGTTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGCCCGCCAGTCGCTGCCCATCCCCCTGCAAGAGACCTTTGACCTCTGCGAGCAGCCGCCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACCAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACAGAGGacaagaggaaggagaagaggaaaCAGAAGTTGCAGGACCCCCACCTGTATGATCAGGTCTATAGGTACTTAGACCTCCCAGGACAGGTTAGGGGAAACGACCGTACTCTGGAGACTGAGAAGATCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTCGGGGCGGAGCTAGCTGAGGACGACCCTGAAGAGGCCCTGAAACACAGAGAGCCTAATGGCTCCGCTCCCTACCACGACAGgtctggaGCTCCTAGTTACTTGGATGGGATGGACGGGCCATTCTCCCTAGCAGCGCTGCCCTACAGCCAGATGAATGAGCTGCTGAACCGCCCTGGGGACAGAATGTACACACGACCCCAtgaccccccaccaccaccccctatGCACCATCTGGGAGACATCAAACCCCCCTCCATGATCAGCTCCAGTTCAGGTTTTTCAGACAGCAGACCCCAATCTCCAGCACAGACTCACGGCTTCAACTCCAACACACCTCCCCCTCCGCCACCTCCCttgccccctccacctcctcccttgCCTTCCATGTCTGGTTTTGGCCCTCGGggcacccctcctcctcctattcctcctctaccCATCCAGCAGCAGCCCCCggccatcccccctcctcctgcaCCTCTCCAGATCGCCCCTGGCGTCCTCCACCCTGCCCCTCCCCCAGTGGCACCTCCCCTCCACATCTCCTCCCCAGCCCGTCTCCAGCAGGTCCTGGACAGGGGCCCGACCCCTGGCCAATCAGATGGCACCGTGCTGCCTCCTCCGCCCCCTCCCCCGCCCCTCCCAGGAGTACGGAGCTCCTCCCCCTGCCCGCCGGGCCCACCCCCCGTGCCTTCCTTCCTGTCAGGTGCCATGGCGTCCCCGCTCTCTCACTCAGGGGGGAAGAAACACTCCGCCAACCTGCCGCCCATCAGCGATGCACGCAGTGTCCTATTGGAGGCCATCCGCAAAGgtATCCAGCTCCGGAAGGTGGAGGAGCAAAGAGAGCAGGAGGCAGCCAAACACGAGCGTGTTGGGAACGACGTGGCCACCATCCTGTCTCGACGCATTGCCGTCGAGTACTCCGACTCAGAGGACGAGTCCGAGTTCGACGAGGGAGACTGGATGGAGTgaatgagatggagggagaggaaaagaaaagagagggggacaaAAGGCAGAACTGTCACCCAACTGTACCCCCTTTAGAGATGTCAGAATCCATCCTTACAACCACTATCCTCTGTCAGTCCTGTTTTACCCCCTCACCTGTCatcctctacacctctctctctctcgccctcttgctctctctccccctctttctcactccccattctttctatcctctctccccctatttttcctccatctctctctttttctctctctacacctccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380467 lncRNA upstream 45535 26269455 ~ 26282016 (+) True G336098
TU380415 lncRNA upstream 163357 26161680 ~ 26164194 (+) True G336062
TU380413 lncRNA upstream 163676 26161680 ~ 26163875 (+) False G336062
TU380406 lncRNA upstream 177486 26149671 ~ 26150065 (+) True G336055
TU380345 lncRNA upstream 243685 26083458 ~ 26083866 (+) True G336010
TU380615 lncRNA downstream 24032 26489708 ~ 26490154 (+) False G336221
TU380616 lncRNA downstream 24032 26489708 ~ 26490154 (+) True G336221
TU380629 lncRNA downstream 37621 26503297 ~ 26503561 (+) True G336234
TU380640 lncRNA downstream 48275 26513951 ~ 26514547 (+) True G336244
TU380699 lncRNA downstream 131016 26596692 ~ 26631463 (+) True G336295
XM_021600724.2 mRNA upstream 46987 26216401 ~ 26280564 (+) True LOC110522374
XM_036976014.1 mRNA upstream 149734 26059992 ~ 26177817 (+) False LOC110522377
XM_036976015.1 mRNA upstream 149734 26137308 ~ 26177817 (+) True LOC110522377
XM_021600732.2 mRNA upstream 269738 25919238 ~ 26057813 (+) False LOC110522376
XR_002473301.2 mRNA downstream 137720 26603396 ~ 26623736 (+) False ak9
XM_021600718.2 mRNA downstream 137720 26603396 ~ 26624669 (+) False ak9
XM_021600719.2 mRNA downstream 137720 26603396 ~ 26624669 (+) True ak9
XM_021600716.2 mRNA downstream 159236 26624912 ~ 26642218 (+) False ppil6
XM_021600713.2 mRNA downstream 173755 26639431 ~ 26642218 (+) False ppil6
TU379995 other upstream 269860 26051053 ~ 26057691 (+) True LOC110522376
TU378607 other upstream 1904820 24420114 ~ 24422731 (+) True G334473
TU378609 other upstream 1908605 24417582 ~ 24418946 (+) True G334475
TU378440 other upstream 2257875 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378192 other upstream 2493129 23833821 ~ 23834422 (+) False G334116
TU380919 other downstream 427459 26893135 ~ 26894837 (+) False G336464
TU380920 other downstream 427459 26893135 ~ 26894837 (+) False G336464
TU380925 other downstream 427459 26893135 ~ 26894837 (+) False G336464
TU380927 other downstream 427459 26893135 ~ 26894837 (+) True G336464
TU381040 other downstream 710705 27176381 ~ 27184970 (+) True LOC110522355

Expression Profile