RNA id: XM_021600704.2


Basic Information

Item Value
RNA id XM_021600704.2
length 4616
RNA type mRNA
GC content 0.46
exon number 9
gene id sesn1
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26686142 ~ 26756544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGGCTCCGTTTATTTACGGACTGTATCCGCAGAGAGAGAACGGTATTCTGCTGTAGGACAGCACCGGCTGACAACTGAGCACTTTATTAACCAGTCCCCCAAGAAACAAAGCGAGAAAGGAAACGGCCATCGAAGTAGATCTTTATATTTGAATACCTGAAAACATAAGATCGCGCCGAGAACACATTATGAAGCACGCAACTGCAGCAACAGAAACCATTGAAAATGATTCATTTACAGTGACAGACGTATTTAAAATATGCACTCGGTGTGAACGGCTAAGCAAAAAGGACTTTGGAGTTCGAATCCCAAGACCCCTGGGAAATGGACCAAGTAGATTTATCCCTGAAAAAGAGATCCTTCAAGTCAGTAAAGTAGACCCCAGGACACAATCGATATTTGAGGACGCATTCGCAGCACTGGGTCGCCTTGACAACATCTCCTTGGTGATGGGCTTCCACCCACAGTACCTGGAGAGCTTTCTGAGGACACAGCACTACCTGCTGCAGATGGACGGGCCCTTATCCCTGCACTACCGCCACTACATAGGCATCATGGCTGCAGCCAGACACCAGTGCTCCTACCTGGTCAACCTGCACGTCAACGACTTCCTCCAGGTGGGAGGGGACTCCAAGTGGCTGAATGGCCTGGACGGAGCCCCACAGAAGCTGCAGGCCCTCGGGGAGCTCAACAAGATCCTGGCCCACCGGCCCTGGCTCCTCACCAAGGCACACATCGAGCACCTGCTGAAGGCTGAAGAACACAGCTGGTCCCTGGCTGAGCTGATCCATGCTGTGGTGCTCCTCACACACTACCACTCCCTGGCCTCCTTTACCTTCGGCTGTGGCATCACCCCCGAGATCCACAGTGACGGGGGACACACCTTCAGACCCCCCTCCCTCAGCCAGTACTGTGTCTGCGACATCGCCAATGGCAACGGTCACGgccacctggaggagaggagaggcaatcACCAGgtgtcaGAGGTGTCTGGTGAGGTGGAGGTGCTGATGGAGAGGATGAAGCAGCTGCAGGAGTGTCGTGATGAAGAGGAAGCCAGTCAGGAGGAGATGGCCACACGCTTTGAGAGGGAGAAGACCGAGAGCATGCTTGTGGCCACGGCAGAGGATGAGGAGTGTGTGCCATCCAGAGACGTATCCAGGCACTTTGAAGACCCCAGCTACGGCTACAAGGACTTCTCCAGGAGAGGAGAACATGTACCCACCTTCAGAGTGCAGGACTACAGTTGGGAGGACCACGGCTACTCCCTGGTGAACCGTCTGTACCCTGACGTTGGTCAGCTGCTGGATGAGAAGTTCCAGATGGCCTACAACCTGACCTACAACACCATGGCCATGCACAAAGACGTGGACACCACCATGCTGCGCAGGGCTATCTGGAACTACATCCACTGCATGTTCGGCATCAGGTATGATGACTATGACTACGGGGAGATTAACCAGCTGTTGGACCGCAGCTTTAAGGTCTACATTAAGACCATGGTGTGCAGCCCGGAGAAAACCACCAAACGAATGTATGAGAGCTTCTGGAGACAGTTCCAGCACTCCGAGAAGGTCCATGTCAATCTGCTTCTTATGGAAGCGCGCATGCAGGCAGAACTGCTCTACGCTCTGAGAGCGATCACCCGCTACATGACATGAAATGCTTTTGGCGTTTATCATTGTTTTTTGCTGTCATTGTCTTTGCTCTCGTGGGACACTTCAGAAGAAATAAACCAAGGGGTGAaaacagaaaatgaaaaagaTGAAAGGTAACCCTGTCTGTCGTGACGAAGCTCGTCCTCGTGATGTGGAAAGAAAAATGAACAGAACAAAAAAAAAGCAAATGAAAGAATGAAAAAAAAGAACTGCAAAAAGAAAAGTCATCTCAACCTACTTGTGGAAAGATAAGCTGTCCTCTTTACCTGCAGTGCCAAAACTCACCATGAGGAGGCAGCCTGGAGCAGACACTCTGCTGGGCCAGAGGAAAAGAAACAGATGACACAGGCCACCCTTCCAGTATTCTAATACACCTCAGTGGATGATGTCAATAGAATCTCCATATAGTGTGAAAACCCACAGCAAATCTCcagaaagcaaagcagttcatCAGTCTGCACTTGATAATGTAGCCACTGTTTTTTGCTTTAGTCTTTTTGTATTAAGAGAAGTTGTTATCATCATGTGGTTGTTGTTGCGGTAACTGGAGATGATGGAAGCATTATTTGGCCTGTGTGTTGGTGTGCCTGGTTATGTCATACACCACAGTATAGTGTGTAGAGGTGCTGCCTGATACTGCTGCTCATGTAAGCAAGGGGTcatattgacccccccccccaatcctccctcccacccctaaGAACCCTATCCATCATAAACCCacagcattacccccccccccccccccttccccataCCCCCCACCCTGAAACTGTTTGTGTAAGCTAACCCAAGAAGTGTGTGAAAGCGGAGAGGTGTTGGAAAAACTAAAAAATAACACTGTCTGAGCCCTATTTAGTTTGACTGTACGTATGATGAACCCATTCTGTATGAGAGACTGatgtcagtgacaaatatcatgtgtggatgtgtgtgtaacTCCATGTGTTTTACAGAAAATATAAAGGAAAAAAGTGTGTTGAAATTTCAAGCAACAAAAAACCAGGAAGAAAGCGAGGTCATTTGAAGTGTGAAACTTCTTGCCTCTGCTGTAGCTCTTTCCATGTGGTGACTGTTACAGTGTTTTGTTTCTGGTAAAAAGCTTTGTCCTGTAAGAAAAAGAACATGAAAGCTAAAACAAAATGGTCTTCCAAGGGGATTGGCTTCCGGTTGTCATAACAATGACCTCACCTGTCTGTCTTCCGCTCACCCTCGACCTTTGACCCTGGCCTGGGCATCCTAACACTTTCAAAGCTTTGGGTATTGTGAATTGTACCAGTAAATAAATACCTCTTCTGTTTTCTTTTCTATCGCATTAAGAAGTGCTCTTTGGCGAGCAGAATGACTCTTTATCATTCTGGGTCGCTTGGCTTTCATTCGTAGGGAGCCCAGTTGGTCCTCATTGGACCGACTGTGATCGATACGGTCCGACTGCAGTCGGTCATAGATGTGCTTGTTCCCTCTGTGGGAGCCTAACCAGTGCAAACACAGTTTTTTTTAAACGAGGGGTAGACTCCACCCTTTTATTTTTGTTGACTAATAACAGTAAAGTACTGCATTCTACTGAGGGTGGATTGATACAGTTGGACAGTTGAATGATTGTTTCACgttaagaggaggaggaagatgaggatgatTATGGAATGGTACATTATTTGGGGGTGGTTGTGAGAGGAAGTGTAGAGGTTTTATCAAACTTCTGACTGTCAGATACTGAAactttttatataaaaaaaaaatggaatatgtTATTGAATCATTGTATTTTTCTGTTTTCTCCATAGAACTGTTGCTGCTGCATCAACATAATCATATCATTATTACATATAAATAATCTATACATTGAATCATTCATGAAACAAGCCCACCGAGTTGTAGTCACAGCACACATGCATGTATTATCTCCAACCTGAACAATACACTTCTGATCTCCATCAATGACAATTTACAATATGTCTTCAGTAATGATGTAGGAAACATTTGGCTATTACAGATGCATTTTGCACAGTTAATGCAAATGAGTCCCACACATCAATAAATGTTTTGTACAACCACATGTGTTGAGTGTGGGCCCACtggttcaatgtctagttttgatttagattTGGTTGACTTGTCGACTAACATGAAGAAAAGTCACCATCTCATTGGATTTAGGTGAAGAAATACTAAATTGTCTTGTTTTGATTGCTTTTTTCCTCGTCCATTCAACGTCAACCcatttcattttttgttgttgaaatcaTGTCAAAATGTTGATTCAACTTGTTTTTGTCCAGTGGGGAGTCAGTCCTCCCATTTTATACTACACTGAACTCTGTGGTTCAATGTTTGCTTGTGTTGACGAGTCCAAGGTTGAACGTTACTCCCACACCTGTTGTGCTAGAACACTTGGACCTGTCTAATGTGCAGTGAGATGAGGGAAAATTCCTTCTAGGATCACCTTTGACCTCTACTCTGCTCACCTTCCTGTCCTGTTCCGTTCTCCCTGCGGAAACTCCCTGGCATCCTTGTGGATGACTGGCTGTAGACTGAATTCTCTGGATGTTCAGGGACTTTTCTATTAAGGGCAAACAGAGGGTGACTTGGTCCATATCTCTACTGATACTGAACTGCCTCATTTCCCTACGACAATCTGAACAGGATGAGACTATTATAAACAATAGATGCACTTAATACCTCCACAATTACCCAACTAACTAACTTTATCAACCCAGACGGACAGGTGTGTATCATGTAGAGAACCATGTGTGTCATTAACTATGGCTGATGAAATGCTATTGGGTTGTGGTCACTGTAAGGCGTTATTATTGCAGGATAGGTTTACTTTATCTTGACAGAAGTGCTGTTTTTGTACTTATTTGATGTGATTTAAAAAGCGCTGTTCTTTGCTAACTTTGCAGCAGTACTGCCTGGCCTGGTCCATATCTGTAACAATAAAGGCTTTGAGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380800 lncRNA upstream 10102 26737523 ~ 26739412 (+) True G336382
TU380731 lncRNA upstream 33247 26646515 ~ 26716267 (+) True G336318
TU380699 lncRNA upstream 118051 26596692 ~ 26631463 (+) True G336295
TU380640 lncRNA upstream 234967 26513951 ~ 26514547 (+) True G336244
TU380629 lncRNA upstream 245953 26503297 ~ 26503561 (+) True G336234
TU380817 lncRNA downstream 10877 26767418 ~ 26767994 (+) True G336399
TU380851 lncRNA downstream 71773 26828314 ~ 26828550 (+) True G336429
TU380909 lncRNA downstream 119232 26875773 ~ 26876169 (+) True G336455
TU380915 lncRNA downstream 126821 26883362 ~ 26883618 (+) True G336461
TU380917 lncRNA downstream 128593 26885134 ~ 26885338 (+) True G336463
XM_021600709.2 mRNA upstream 81757 26651503 ~ 26667757 (+) False LOC110522366
XM_021600711.2 mRNA upstream 81757 26651503 ~ 26667757 (+) False LOC110522366
XM_021600710.2 mRNA upstream 81757 26659929 ~ 26667757 (+) True LOC110522366
XM_021600715.2 mRNA upstream 107296 26639431 ~ 26642218 (+) False ppil6
XM_021600700.2 mRNA downstream 179294 26935835 ~ 26961848 (+) True snx3
XM_021600696.2 mRNA downstream 241951 26998492 ~ 27004619 (+) False LOC110522356
XM_021600695.2 mRNA downstream 241952 26998493 ~ 27004619 (+) False LOC110522356
XM_036976024.1 mRNA downstream 242004 26998545 ~ 27004619 (+) True LOC110522356
XM_036976025.1 mRNA downstream 298087 27054628 ~ 27185449 (+) False LOC110522355
TU379995 other upstream 691823 26051053 ~ 26057691 (+) True LOC110522376
TU378607 other upstream 2326783 24420114 ~ 24422731 (+) True G334473
TU378609 other upstream 2330568 24417582 ~ 24418946 (+) True G334475
TU378440 other upstream 2679838 24063831 ~ 24069676 (+) False si:ch211-51e12.7
TU378192 other upstream 2915092 23833821 ~ 23834422 (+) False G334116
TU380919 other downstream 136594 26893135 ~ 26894837 (+) False G336464
TU380920 other downstream 136594 26893135 ~ 26894837 (+) False G336464
TU380925 other downstream 136594 26893135 ~ 26894837 (+) False G336464
TU380927 other downstream 136594 26893135 ~ 26894837 (+) True G336464
TU381040 other downstream 419840 27176381 ~ 27184970 (+) True LOC110522355

Expression Profile