RNA id: XM_021600700.2


Basic Information

Item Value
RNA id XM_021600700.2
length 1772
RNA type mRNA
GC content 0.43
exon number 4
gene id snx3
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26935835 ~ 26961848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AtgatgtcaacttcaatgggggtAGGGACGTGCTAGACCCTGGTATTAATGTCTATGTGTAGACActtgccgtgaccccactctcggAGGGTGTCTCAGGAAGAGTTAGGAtatatgcaaaacattttttttaaatatactatTCATACATGcgtattaatacacacttgtacatgtttGAAATAGGaaaaatataagcacccacccatttattaatataataattattattattataggggacgtcccaaggatccagAATAACACGGACCCAAACGGCAGGGCGATTGCGGCTAACCAAGCTAGTGGGGGAGAAATGGCTGATACCATAGCTGATACAAGGAGGCTATTCTCCAAGCCTCAGAACTTGAACGACGCGTATGGACCCCCAAGTAACTTTCTAGAGATTGATGTGAGCAACCCTGAAACGATCGGTGTCGGGAGGACCAGGTTTACCACGTATGAAATAAGACTGAAGACCAACCTGCCCATCTTCAAGCTGAAGGAGTCTCGTGTGCGGAGAAGGTACAGCGACTTTGAGTGGCTCAGAGGGGAGCTGGAGAGAGATAGCAAGGTGGTGGTCCCCCCTCTCCCCGGGAAGGCTCTGTTCAGACAGCTTCCGTTCCGAGGGGACGATGGGATATTTGACGATTCCTTCATCGAGGAGCGGAGAGCTGGACTGGAGCAGTTCCTCAACAAAGTGGCTGGTCACCCTTTGGCTCAGAACGAGCGCTGCCTGCACATGTTTCTACAGGACGAGTCTGTGGACAAGACCTATACCCCCTCCAAAATACGACAAGCCTAAGAGCAGGACCACTGCCCGGCCCACAACCCAAAGCTCTCTCTACTGCTGACGGTCCTACTCTGCTCTGACCAAAAACACTTCTATGATCTTCACTCTTTCATTTGTAAtcactttctttctgtctttttaTTTCCGTTTGATTAGTGATCTCATGTAATGCTCGTTTTCAACTCTCGATTGGATGAAACTAAGAAATGGTCCCGACGTAATTGTGGTTGAAAATAATTTATATAtcgattttttttttgtctcaaaATACCACTAACTTTGGTATTTTACATTAATCTGTATTTATCAGTTGGGTATGTCTTGGATATTTTAaagaaatatttaaaaaaaatacctttCCATGTATGCAAACCTCATGTTTAAACCCCATACATTAAGCACTGTTTCCACTCAATGTCCAATTGGAATGATTGTCCTCACCGCCATAACTTTGATTTCACACACTTTGTGGATGGTCCCCTGACTCTGAAACAGTCCCTGAAAAAAACAATCCCTGAAAAAACGAGCTCAGACTGGGGGAAATATAATGACGTCAGTGATATTCTGGTCGGAGCTCTAGGTTAGTGCCAGAGATTCCGACCGGTATTTCTGTGTTGGATgactattaaaaaaaataaaaaatctatcaaataaaaaaatcccatTTGGCACTTGCATTCCCAGTTGTCATGAATGCACTTAAATCGGAGCTTTCCGAGTTGTCTTGTACGCACTGTCAGTGTGTACTACCGGCCAGCACTTCCCCTGTTAGTTAGCCTGTAAATGATTTTCTAATGAGAAATGCACCAGAGGGGAACCCCACAGAGTTTTTCTACCGACTGACCGTGCATGTGTGTTTATGACGTTTGTACACTGCTGTgccattttgtttattttgaaCGTTTTTCAATAAAACAGGTCAAACGCACTCATACGCATGAGGTGGTGGTTTTCCTGAATAAAGATTTCAGTGAATTCA

Function

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17918 SNX3_12; sorting nexin-3/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380931 lncRNA upstream 40998 26892229 ~ 26894837 (+) False G336464
TU380933 lncRNA upstream 40998 26892981 ~ 26894837 (+) False G336464
TU380918 lncRNA upstream 40998 26893135 ~ 26894837 (+) False G336464
TU380936 lncRNA upstream 46652 26888641 ~ 26889183 (+) False G336466
TU380937 lncRNA upstream 46652 26888807 ~ 26889183 (+) True G336466
TU380995 lncRNA downstream 16339 26978187 ~ 26978399 (+) True G336519
TU381026 lncRNA downstream 82854 27044702 ~ 27045693 (+) True G336550
TU381134 lncRNA downstream 244981 27206829 ~ 27213254 (+) True G336650
TU381193 lncRNA downstream 334698 27296546 ~ 27298077 (+) True G336705
TU381197 lncRNA downstream 340824 27302672 ~ 27305939 (+) True G336709
XM_021600702.2 mRNA upstream 179291 26686142 ~ 26756544 (+) False sesn1
XM_021600704.2 mRNA upstream 179294 26749514 ~ 26756541 (+) False sesn1
XM_021600703.2 mRNA upstream 179294 26749541 ~ 26756541 (+) True sesn1
XM_021600709.2 mRNA upstream 268078 26651503 ~ 26667757 (+) False LOC110522366
XM_021600711.2 mRNA upstream 268078 26651503 ~ 26667757 (+) False LOC110522366
XM_021600696.2 mRNA downstream 36644 26998492 ~ 27004619 (+) False LOC110522356
XM_021600695.2 mRNA downstream 36645 26998493 ~ 27004619 (+) False LOC110522356
XM_036976024.1 mRNA downstream 36697 26998545 ~ 27004619 (+) True LOC110522356
XM_036976025.1 mRNA downstream 92780 27054628 ~ 27185449 (+) False LOC110522355
XM_036976027.1 mRNA downstream 138127 27099975 ~ 27185449 (+) False LOC110522355
TU380919 other upstream 40998 26893135 ~ 26894837 (+) False G336464
TU380920 other upstream 40998 26893135 ~ 26894837 (+) False G336464
TU380925 other upstream 40998 26893135 ~ 26894837 (+) False G336464
TU380927 other upstream 40998 26893135 ~ 26894837 (+) True G336464
TU379995 other upstream 878144 26051053 ~ 26057691 (+) True LOC110522376
TU381040 other downstream 214533 27176381 ~ 27184970 (+) True LOC110522355
TU381324 other downstream 629004 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1896868 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1952751 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 2204670 29166518 ~ 29166996 (+) True G339830

Expression Profile