RNA id: XM_021600695.2


Basic Information

Item Value
RNA id XM_021600695.2
length 3541
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110522356
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26998492 ~ 27004619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGATCCTCATTATCACATGACCACAGTAGTAAGCAGACGGGAACAGGAAGTGATGGACTGTTATTGTGTGTGAGCTTTGGAAGGTGCTTCTTAAAACTTCCCTATTTCACAAACATGTTTATTGTTCAGGTGGGTGCGTTATTGATAGCGTTGACATATTACGCCAATGCTCAAACGTCTGTTGTCGCTGTAAACACCACCATCCCTGGTTCAGAGCAGAGCGCAAGCGGCTTGAGGCAACTCGCCGCGGCAGTGGTGCCTCAGTCGTCCGTGTTTCACCCCAGTCTCCGTTCACAGTTCTCTCTCAACCTGTTGTCGGCGTTTCCAGAAGATCTGGAGGTCAGCAATTACTGCGTCGCGCTGCTGGCTATCTTTGGGCAGCGATATTCAACGTATGTTAATTGTTTGGTGTCCGCCGCGCGCCCTGTCAAAGTGTGCCAAAACTGTTATGGCACCTACGGCAACCTTATGGAAATCTACAAAAACATATCAGACCAGATGGGCCCGGGGAATGTGAGCTGCAGAGACAGCCTACTGCGTTCTGATAGGCTGATGTTGGTGTTCCTGCTCTACAGTAACCTGGAGGACATCTGGACCGCTTCAGAATGTAACCGTTGTGTAAGCCTGAGACACCACAGCCTGACCAATGACACCCTTTACTTCATGGAAACTCTGAACCAGTCCCTCAGCTGCTTCGAGAAGTACCAGAAGCAGGGTAACCACTCAGAGCTTTGTACGGAATGTAAGGCCACATACAGAGGACTGAATGAGCTGTACAGCCGCATGGAGAAGAATCACACCCTCTGCATCGACATCGAGGACTCTATGAATATGACCCGCATACTGTGGAGCAAGGATTTCAATTGTTCTTTCCCCCGGGCGGAGACTGTTCCTGTCATCGCCGTGTCCAGCTTCATGCTCTTTCTGCCCATCATCTTCTACTTGAGCAGCTTCCTTCACTCGGAACAAAAGAAACGCAAGCTCATACACCCCAAACGAGCCAAGTCCAACCCCAGCTTCATTAACATCCAGGACAAGTTCAGCtgaggagagtgagagatggaagaGAATGAGGAGAAGATAGATCAGATAATGACTTTATTATCCCCGTGGGGAAATTTTGGTTGTCGCTCTGTGCATACATAAACATATAATCAACAATAGACaaagtacatacagtatacagacaATACAGGTAGAAAAGTACAGTTTGTGAGTGATCAGTGATCATCCATACACTATAGACAACAGAACACACTGTCAACTACAATGTTAGATATGGgccacacaggaggttggtggcaccttaaatgggttaggatgggctcgtggtaatggctggagtggaatcggtggaatggtatcagtcattccattgactccgttccagtcattattatgagccgtcctcccctcagcagcctccactgataggcCAGCCCGATGCTCCTACTTGTGGTTTAAACATTCAGGAACCTTACTACCGCTTGGACAAAGGATAATTTGGCTCTATTCCTTTGGTTTTCTGTAACGTCTCCTCGAGCAGAGTAGCTAAAATTCCTGATAAAGAGGATGTCTGGAGTCCATCAGTACCTTGTGGGGTTTTGAGGGCTCTTATATCATAAATGACCTCCAGATCTGTCTGCTTGAACTTGCAGAGCTTACAATTTCTCTGCGAGAcataatttttaaaaattaaacctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgactgcctaccccagaCGACGttgggctaattgtgcgctgccctatgggacacctaatcacgaccggatgtgatacagactggaatcgaaccagggactgtagtgatgcctcttgcactgagatgcagcgccttagactgctgcgccactcaggagaggAAATTACAATTTCCGTACCAGACAGAGGAAGAATCTTTGTTGTCCAAAACCGCACCTGGATGCAAATGTAACATGTAATTTCATCTATGGCTGTGGTTTcagccaggggtgtattcattatgtcTTGCAACAGAAACCGTTTAAGAACCAAACGGGAGCAAATTTAATGGAACtaggagggacctacctgaatttgtccaatataaactctttgttttcattgcaaaacGTTTTCCATTTGATGTAAACGGTTTCTTTTGCAacacgttttgcaacagaattcaCGTAATGAGCGCACCCTGTGGGAGAGGATAccaataatttttttaaatatatatttttttgttttatttttgctGAAATTATATTTGAACACCCTAGCCCCACCTCACCCATTGCTTCTACAATGAAAGACAGTCTGGAGATGAACCATAATGACTACTGATTTATCAGTAATGGGTAGTTGAAGTATATTTTTGTGTGCATTATTATTTTGTTTGTGTGACTAGATGTACTCTGCTGTGAAAGACAAACGACAAACAGGCAGAAAGCACTTGATGTCTATTAGTTGTGACGTATGCCTGCCGTGTAAAAGTGGATGACAGCTGAGATGGagagacattttttttaaattaatgtttttattttaaacaGCAAGGTGAAAGCACTCCATGATATCACAGAAGGTAGAGTGAGCCAGCTCTTTCAATcctatttgtttttttgttgcactGTTAATGTCTTTGTCCTTTCCCACTGGTTATCACATGCTGGACTTGTTTTTTGTGTTATATTTGATAATGTGAGTAGTTTGTGGCAATAGATGTAATTATGTATCTGTATATTTGCCTTATAGAAGTGGCTTCCCTTTTGCTTAAAGATACATTTCACAAACTAGGCCTATTTCAGCTGCAGTAGGGTTTTTACTGACCAATAACACTGTGCCAACTACATTTGGTAGTTTTTTTTTAGATGTGTTAATAGTAACTGTTACTTTGTTACAGGTGTAAAATCCCTCTCTTGTAGCGCTTGTCAAAAATTGTACAGGATGCTTTAGGCCTACTTTTCAGAATCACTGTCAGATACAATTAATTCGTCACGCAAAACCCTAGATATGCTACTTTCTATTTGACTTGTTACATTTTCCACTAGATTCATAtacatctaattagcataatacaaataATTCCATCAATCtaatttaaataaaacatttacaagcCAGCGCATCGCCTGATGTCGGACTTCCGCACCGAAAAATGTATGCAAGTGTATGGGGCATTTCCACGTCAAAGGTATATGGGTCATCCTGAGCTTTCTTGTCTCAGATATagaacagacacttcaaaacatacttcctttagatgatttattttttactatattTTTTGGCATGCATTAATATGTTATTTAATGTGATTCCATGGACTAATGGCAGTAAAGCCTAATTCAATCTTTcatcaaatatttttattttttatacttaaatgggtcctaaaattcaaaatccaATAGCTTAATGATCTTTGGTATGACCATATTGGCAATTCTATATGTTAGCTTAGAAACTCAGCCCCTTAGACTCAAACCCATTATTAACACCATGTCTTAAATTATGTTCGTTTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380995 lncRNA upstream 20094 26978187 ~ 26978399 (+) True G336519
TU380931 lncRNA upstream 103656 26892229 ~ 26894837 (+) False G336464
TU380933 lncRNA upstream 103656 26892981 ~ 26894837 (+) False G336464
TU380918 lncRNA upstream 103656 26893135 ~ 26894837 (+) False G336464
TU380937 lncRNA upstream 109310 26888807 ~ 26889183 (+) True G336466
TU381026 lncRNA downstream 40083 27044702 ~ 27045693 (+) True G336550
TU381134 lncRNA downstream 202210 27206829 ~ 27213254 (+) True G336650
TU381193 lncRNA downstream 291927 27296546 ~ 27298077 (+) True G336705
TU381197 lncRNA downstream 298053 27302672 ~ 27305939 (+) True G336709
TU381216 lncRNA downstream 323260 27327879 ~ 27333502 (+) False G336723
XM_021600700.2 mRNA upstream 36645 26935835 ~ 26961848 (+) True snx3
XM_021600702.2 mRNA upstream 241949 26686142 ~ 26756544 (+) False sesn1
XM_021600704.2 mRNA upstream 241952 26749514 ~ 26756541 (+) False sesn1
XM_021600703.2 mRNA upstream 241952 26749541 ~ 26756541 (+) True sesn1
XM_021600710.2 mRNA upstream 330736 26659929 ~ 26667757 (+) True LOC110522366
XM_036976025.1 mRNA downstream 50009 27054628 ~ 27185449 (+) False LOC110522355
XM_036976027.1 mRNA downstream 95356 27099975 ~ 27185449 (+) False LOC110522355
XM_036976026.1 mRNA downstream 111792 27116411 ~ 27185449 (+) False LOC110522355
XM_021600692.2 mRNA downstream 181846 27186465 ~ 27195351 (+) True tcp1
XM_036976031.1 mRNA downstream 397478 27402097 ~ 27521982 (+) False LOC110522432
TU380919 other upstream 103656 26893135 ~ 26894837 (+) False G336464
TU380920 other upstream 103656 26893135 ~ 26894837 (+) False G336464
TU380925 other upstream 103656 26893135 ~ 26894837 (+) False G336464
TU380927 other upstream 103656 26893135 ~ 26894837 (+) True G336464
TU379995 other upstream 940802 26051053 ~ 26057691 (+) True LOC110522376
TU381040 other downstream 171762 27176381 ~ 27184970 (+) True LOC110522355
TU381324 other downstream 586233 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1854097 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1909980 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 2161899 29166518 ~ 29166996 (+) True G339830

Expression Profile