RNA id: XM_036976025.1


Basic Information

Item Value
RNA id XM_036976025.1
length 7540
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110522355
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27054628 ~ 27185449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTACATACCTTGATTATGAACTTCTATTCATGAAAATGGCCAATTCATTTGATGAAAAAACATTGTTGTTTCCTCAGAGCGTCGCTGCTGGCGGTTGTTTACAGAAGTTTTGCAGGTAAACGGAAGCTCAATGAAGAACAGCTTCTCTCCGGTGAGAGTGAATACTTTTTCACGGACAGGATGTCGAAGGTTAGGACGGTCAAATCCTTTCAAAGCGTCAAAGAAAGCAAACGATTACACGGatgccctccctcctctcccagagATTCCGGATGCCGGCTCGGTCCTGAGCTCAGTGGGCATTCCGGGCCGCTTTCGCCACTCCGACATCCACCACACCCCTCTACGCTACTGCTCCGCCCACAGCATGGACTCCTCCCCAGACAGTGCTGAGCGCCCAATCAGCTACGGCTCCACCTCTTCCTCCGCCTCCTCCAGGGACAGCCACTGCTCACTGGGCAGCCGCTCCACTTTAGGCCCCTCCCCTCACTGTCACCCCGCTCCTGACCGGGACTCCGGGGCGATCCGGTTGGAGCTGGTTCCAGCCAGACAGCTGGGATGTGGGGATGAGGAGGAAAGGAATATTGGAGGAACAGATGCAGGAAAAGGGACTGTTAGACAGGTGTCTGCCCAGACCCCCCAGTCAGACACCAAGGCTGGGGAGAGGAGCTCCCCAGGGCCCAGGGTGCAGTATGTGGACAGGGTGGTTCAGGAGATAATGGACACTGAGAGGACCTACGTACTGGACCTGCAGAGCATCGTACAGgattACCTGGAGTGTATCAGTAACCAGTCTTGCCTGGCACTGAGCTCAGAGGAGAGAGGCTCTCTATTCGGGAACATCCGAGACATCTACCACTTcaacagAGATCTGCTTCATGACCTGGAAAAGTGTAATTCGGACCCTGTGGCCATTGCAGAGTGTTTCGTAGCCAAGAGTGAAGAGTTCCACATTTACACTCAGTACTGCACCAACTATCCAAGgtcaGTGGCTGTGTTGACTGAGTGTATGAGGAATAAGGTGTTGGCTAAGTTTTTCCGGGAGCGTCAGGAATCTCTGAGACACTCCCTGCCTCTGGGCTCCTacctgctcaagccagtgcagAGGATCCTCAAGTACCACCTACTGCTGCACGAGATAGCCAACCACCTGGAGAAGGACACAGAGACATATGAGGTGGTGCAGGAGGCCATAGACACCATGCAGAGAGTGGCCTGGCACATCAACGACATGAAGAGGAAACATGAACACGCCGTCAGGCTGCAAgaGATCCAGAGTCTGCTGACCAACTGGAAAGGGCCTGATCTGATTGGCTACGGTGAGCTGGTTCTGGAGGGGACATTCCGTCTGCAGCGGGCCAAGAACGAGCGCACACTCTTTCTGTTCGACAAACTGCTGCTGGTCACCAAGAAACGCGAGGAGGCCTTCACCTACAAAGCCCACATCCTGTGTTGCAACCTGATGTTGGTGGAAATCATTCCGAAGGAGCCACTCAGCTTCAGTGTGTTCCACTACAAGAACCCCAAACTACAGCACACCGTACTGGCCAAGTCTCAGCAGGACAAACGCATGTGGATCCTACACCTGAAGAGACTCATACTTGAAAACCACCCGGCTAAAATCCCAGCCAAGGCCAAGCAGGCCATTTTGGAGATGGATGTTATGCacCACCCAGGGTTTCACTACAGTCCTGACGGGGACAAGAGGAGCCCCCACACCAAGGAGGGCTCCACCCCTCGACGGGTCCGCAGGAAGTCAGaGCCTCTGTCCAAGTTACTGAAGAACGCTAAACATGGTGTCAAGGAAGATGGCTCAAAGCGGATGAGTCTGGGTGCCACCCTGCTCTCCCCCGTGTCCCAGCTGGCTCTGGGCACTATTGGTCGTAGCCGCAGCCTGGTCAACCAATCACAGGAGTCCCTGGACCCTGGCGACCATTTTGACCATAGCGACAGGGAGGACGGGGAGGAGCCACACCAGCAGGATGCCGACGATGAGGACGACAGTGGCCTGGGTGGGGGAAAGAGACTGCGAGTCCCAGAGAAGTCTAGCAGGAAGAAGTTGAACCAACAGGCGTCTATGGACAGCAGCATCGACCAATGGAAGACCTTCAACATGAGCGCCTCAGACCTACAGagGGCTAACAAATCTCTTCAGGGAGGtcaccaccctcctctcctcaggacgCCCCGTGTGACAGAGGAACCTCCGGACACCCATGTCCCCTCCATGCTGGTCCCAGGGGGTGACCCCCAGACGGTGGGGAACATCTGGGCGGACCACCGTGTCCGCAGAGCCATGTTCCCTACGCGTCAGCGCACCATGAACCCtgacgaggaggacgaggacaTCTACCAGATGTTTGTCCCCACCGAGCCCGGCGGGCAAGAACCAGAACCACTTCCTGTTAGGTTAGAGGTCACATCGTCTCCCAGCAAGACCCAGGGACGACCCTGCAGCTGGCACATGGAGCAGGTTCCCACGGTGCAGATAGACCCCCCATCCACCAGAGACAGCAGAGTGCTGCGGAGAGCCAGCAGCGTGGGGGAGAAACAGACTGGCGGCCGACACAGCCCCCCTGGTCAGGATGATGACCAGGAAGGGATGATCCACACTGAATCGTCCAGCAACGACATTTCGGGATCGTCGTCGACCGAGCAGCTGATGATAGACGACATAGAGAACATTTACGACAACATCAGCTATGAGGACCTGAAGAGCATGGGGCTGATCAGGAGGGAGCAGGAGGGTCGTGGGGCCCAAAGAGAGGCCCCTAGAGACACACAGTGCCCTGGGGCTCTAAACACAGGGGTCACTGGGAGTATTACAGAGCCTCTTATGGAGCCAGACTGCTTGTCTGACAGTAACCACTCCTCCACCGCCCTGgacggggtgccatttgggacgtgtgCCCTGAAGATCGGGGAGGAGGAGAACATTTATGATACTATCTGCTTTAGGCAGCCCCCAACCAAGGGTGACAGGGATGGGGACAGACCTGCACAGGAGAGGGACAGCCTGTTGCCGTCTGCCTCTGAGCCTTACCTGACGGGCTGTGAGAGCCTGGGGGGCTTCGTGTCCGAGGACAGCCTACATTTTGGGGAGGACGAGAGGACGGAGGATAACTCCCATCCAGTCCACGGCACCTCCGAACCGGACTACTACTCCTCATCCGCCTCGGAAACGTTCTCCCAACGTTCCCACACCGGTGACCGGATGTCGGAGCAGGTGGACGAGATCTGGAACGATTTGGAAAACTACATCAAGAAGAACGAGAAGAACGCGGACCGCCTTCCCGCCGCGTTTCCCGTGAGTGCCAGTGAGGCCCCCAAGACCTCGTCGGTCAAGAGCAGCCCCAAAAAGAACAGTTCCCAAAAACATAGATCCCCTACCAAGAGCCCCCCAGCCCACAATCCCAACCCCCCCACTGTGACCCCCCCTCACCAATTCACCATCCCCATCCTCAACTTCCCAGAGCTGCTCAGAGAGGCTACCTTTGAAGATGAAGATCAttacccctccccttctcccctcactTCCCcgtccctccccctccctgccaTCCCAGACCCTGCCCCTTCCGGGACAGTCAAGACCATCCGTAACAGACTGGCCCGCCTCAGCAGTGGCAGCTTCCGTCTGGAAGATGATGATGAGCTGGGGGATCTGCCCCAACGGGACCACAGCCAAAGGGACCCCTCCATCAGGGACCTCCACAGCCTGTTCCCTGGAGAGCTGGCTGGGCTCGGGGGACTGGACTCCCCCCTggcctcctcttctcttcttccagGGGACTCAGTGGACAGCTTCTCCCAGGAGCTCATGGACAAGACCAAGAACCGTGTGTTCTTGATGGCTCGCCAATACAGCCAGAAGATCAAGAAGGCCAACCAGCTGCTCCGCATGAAGAGCATGGACCCCGGCGACATGGGGTCAGGAGGACGCAACAGGGAGGAGAAGAAGCAGCAGAAAGACCTGGAGAAGAAGCAGAAAGACCTGGCAGCCATTTTGGAGGATAAGAAGCAAGGCGGCGCTGCCATAGgtgCGAGGATAGCCGAGTACTCCCAGCTGTATGACCAGGTGATGTTTAAAGACCCTCCAGGTCAGGGCTCCAGCAGCCCGGGTCCTCCTGGTTCGCACCATTCCCACCTAGGGCTGGCCTCCTCCCCATCCCTACCTGAGACCTGCTCCTCCCTGGGCCTTGGGCTGGAGGATGACTGGCTCCTCTCCACCTACAGCAACGGGGAGCTGGCCAGCTTTGTGTCGGGGATACGGTCCTCCACCCCCCAGTGCAGGCTCACAGCAGCCTGCTCCGTCCCCACCCTAAAGATCCTACCTCCCTCCCCAGAGACCTCACCCACCCAGCGGTGGAGCTCTTGTGTCTCTGCCCCCAGTGAGAAGGAGGAGCATGTGTACAGTTCTATTAAACGACACACCTCCTTTAACTCCGcctcctcttcctcgtcctcctctaAACCACCTACCAGCCGCTGCCAGTCTATCTGCTCATTGGGCGACCGGCAGCAGGAGAAGGAGAATGACCTTACCGGGTCCAACCGTGGCCCGGCTGTGGTCCAGAGTTCCTCAGAGAGACTCCATGGTCCCAGTAGTCTGGGCCGGGCCGGTCGGCAGAGCAGCCTCCCGGAGCGGTCCAGTTGCGGTCACGGTCACTCTGACCTCACCCTGCAAGATGGTCAGCAGGTGGTGGTCCTGAACCGTGCCTCCGCGCTGAGCATGCTCACAGCCACCCAGAACTACCTGGCCAACTTCAAGGACAATGGAGATGACGATGATGACGATTACGTGGAGATCCGCTCTGAGGATGAGAGCGAGCGGGATCAGGACTGCTCCGGGCAGCGTaacaatggtggtggtggtggctccAGAgggccagcccagacccagagtCTGCCCTGCACCCCGTTGAGGTCCTCCTGTGGGCTGACGGACCGGGAGCGTCTACAGGAGTACCTCTGGGCAGAGCAGCCGGCACAGCAGAACCAGCCCAACATCGTCCAGTCACTCAGAGAGAAGTTCCAATGCCTCAGCTCCAGTAGCTTTGCCTGAGTTGCCATGACCACCCATAACACACCACCATATGAACATACTAGTAGATGTAGTTTAAGCAAGTCTGTAGCTTTGCCTGTCTCATGACAACAAATAACACTAAACggctggaggtttgttaacagggAATGACACACTAAATGGTCAATTCAACACACTACTGTACGcacaacactacacaccacacaggtCTTTAGCTTTGCCAGAGTCTTCAGGACAAAAAAGTACCAATATGCATTTTTGCCTGATTCACCGGTACAACGTCACACGCAACATGCAATACTGCAGCTTTGCCAAAGTCACATGGGCAAATTTCAACATATCACAAAACAACATGCCAAATACTGCACTTGAGTAGTCATGGCAACATACATGTACAGGAACATATTAGTACTACAGAGGCACTCCACCGCCGCAGCACTTTTTACAGTCTTCCATGTCAAGCAGATTGACTTCCGTATCTATTTTAGATAAGTTGAAAAATAACTATGAAACGGTCAGTTATCATTTTAGCAAACTGGATGATATTCCTGAGTACAACAGTGTAGCTAGGGGCTCAGAGTGTATGGGCTTAACAACTTAAAGGGAAGCATACAGACCCATCTTTTAGAGATTTTGGAAATTAGTATTCCATGTACTGTACAGATATTTCTGCTAATTATAGTTATCtgttatagtagtaatagtaagaAATAGATAACTATCCATTCATTCTAACTGTTCCCCCTTCAACAAAAATACTGACATCCCAAAAATGTAATTTGGTACACTGCTGCAGTCTGCTAGCATCTCTTGATGAGGAAATGGCACTGGCTGAATTTGAGTTGTTGCTGTAATTTGCTCTTTTGAACACCATGTCATTTTAGTTAACAACCATCTAATCAAGGTTTTCAACTTTTGTTTGAGTTACTTTTTAAAGGTTGTTTTAGCGTATTTAACTTCCTATAGCTGAGCTTACCCCTTATCAGAGGGATGATCCTATGTGACTAGTTGTCAGTGGTACTGTTTTAACTGTGCATAATACAGTGTCAACCAATTTAACACAATCTGTGCAAGCAGCTTAATGAATTTGCAATTAGCTCAGGATTATAGGCTAGGTATGGACAGTTTATCAGCAATAATATAAAGAGGATCCACACATAGTACCTTGCTGTTCATTAGGTTGAGTATATTTTACATTGGGCTGTGGTGATGTAAAGCAGTAGATAGCCTATACCAGTCTTAATATAATGATTGGGTTTTCTCAACCTGCTCAAACGCCTTGGTCATGACTAGGGGATCACGCTTTAAACAGAAAAATCTTAAAATCAAGAGAAAAGTGTGCTGATATTCAATAAGCAGCCGCGATAGGAGTTATCTATTTATTTTGAATCTGTGCGTCTGAAAATGGTAATAAGTATATTTTAGTCTTCTACATACACTACGTAGGTTGAGTGGCATAGTGCATCTTAATAGGAAGAacctaaaatgttattttatcttATTCATTTTAAAACGTTGTTTCTAAGAGGGACCATGGAGGAGAGCGTTGAATGAGTGAATGAATGAGTGTTTTGATGTACATTTCTCTTCAACCTCACAGAATTTCGGGTCAGATTTCTTGTTTACTTCATGGGACACCCCTCACCTTCACACTACTGATCAGCACCCCACCCTTCCCACTCCCTTTCTAAACACGTTATGCCTGAATATCATCCTGATTCATTCAAATATTCACAATAATGTCATGTTAGGGTAGATTGTCACATACATTGAGTTTACTTTTTGTTTTAACTCAGACATCACTGAACAGTTTCAGTAGTGAGGATCCACACTTATTGAGAATTTGTTTCATGTTTGatctcatcaatcaatcaatcaatcaacttaCAATGTCTTAtttatttacaacaacaaaaaaactattcTTGACCCCCACACATCACTATTATGAACCGCCACAGCCAGTTTGTAAATTAGAATAATAACTTTGTTGGCTTCTTGATGAATTTCGGGACACTTTGGATAAAATTTGGttcatttgtttactgtgaatgttACAAAAAAATGTCGTTTTGTTTTACGCACTGTTTGATTATATTTTCCTTATCAAAATAATAAATGAAAAGTTGGAATGCACAATATCATGTAAATGTATCCAAAACAACTTAAAAATATGAAGTATGTTTCTTTTATTCATTGTATATTTGTTTCTCGTGTTTCACTGGTGGGGATTGTCAACCttcattgaaattgaattgactcttgcacttttttttttttttattaattatttttattacatttgatTTGTAAACACTTTGTAAAGATGTACATTTTAGGAGAGTTATTCTTGTATGCCATAGGTTTGCTATATGATGATTTAATGTTTAAGTTAAGTGTACTGTAATTTTTTTTAACTGCTAGTTGGCATTGCTCgataaaacaaatgtatttgaggtcataaataaaatacaaaatgggTTTCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381026 lncRNA upstream 8935 27044702 ~ 27045693 (+) True G336550
TU380995 lncRNA upstream 76229 26978187 ~ 26978399 (+) True G336519
TU380931 lncRNA upstream 159791 26892229 ~ 26894837 (+) False G336464
TU380933 lncRNA upstream 159791 26892981 ~ 26894837 (+) False G336464
TU380918 lncRNA upstream 159791 26893135 ~ 26894837 (+) False G336464
TU381134 lncRNA downstream 21380 27206829 ~ 27213254 (+) True G336650
TU381193 lncRNA downstream 111097 27296546 ~ 27298077 (+) True G336705
TU381197 lncRNA downstream 117223 27302672 ~ 27305939 (+) True G336709
TU381216 lncRNA downstream 142430 27327879 ~ 27333502 (+) False G336723
TU381220 lncRNA downstream 142430 27327879 ~ 27331504 (+) False G336723
XM_021600696.2 mRNA upstream 50009 26998492 ~ 27004619 (+) False LOC110522356
XM_021600695.2 mRNA upstream 50009 26998493 ~ 27004619 (+) False LOC110522356
XM_036976024.1 mRNA upstream 50009 26998545 ~ 27004619 (+) True LOC110522356
XM_021600700.2 mRNA upstream 92780 26935835 ~ 26961848 (+) True snx3
XM_021600702.2 mRNA upstream 298084 26686142 ~ 26756544 (+) False sesn1
XM_021600692.2 mRNA downstream 1016 27186465 ~ 27195351 (+) True tcp1
XM_036976031.1 mRNA downstream 216648 27402097 ~ 27521982 (+) False LOC110522432
XM_036976030.1 mRNA downstream 216648 27402097 ~ 27523782 (+) False LOC110522432
XM_036976032.1 mRNA downstream 216648 27402097 ~ 27523782 (+) False LOC110522432
XM_036976040.1 mRNA downstream 216648 27402097 ~ 27523782 (+) False LOC110522432
TU380919 other upstream 159791 26893135 ~ 26894837 (+) False G336464
TU380920 other upstream 159791 26893135 ~ 26894837 (+) False G336464
TU380925 other upstream 159791 26893135 ~ 26894837 (+) False G336464
TU380927 other upstream 159791 26893135 ~ 26894837 (+) True G336464
TU379995 other upstream 996937 26051053 ~ 26057691 (+) True LOC110522376
TU381324 other downstream 405403 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1673267 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1729150 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1981069 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 2149920 29335369 ~ 29336939 (+) True G339928

Expression Profile

XM_036976025.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_036976025.1 Expression in each Bioproject

Bar chart with 19 bars.
XM_036976025.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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