RNA id: XM_036976035.1


Basic Information

Item Value
RNA id XM_036976035.1
length 6695
RNA type mRNA
GC content 0.53
exon number 45
gene id LOC110522432
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27402097 ~ 27524388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCTGCCTTCACACACGCGCCAGTCAGTCACTGGGATGCGCGAGACCCAGCAGCCACCGAGCATATAGCGCGGGATAAAACGAAAGCTTACCAATAATTAAAGATCCTTCCTTTCTTTTTGTCGAAGGAGGATAAAGCAGATGTTGCATGCGGAATGGAATTAGATTTTTGTTCCACAGAACCAAAGACACAATGAGAGGGTCTAGGTTTAGAGATCACTGAACATTCGGTTTAAACGCATATCAGCAGTACATTATAGTTGTTTTGCTCTGTGAAAAAAAATAGTTAATTTTCTCCTGAAGTGCTGGATTGTACCTAACTTGACATGGCTCTTTTAGTCCACCTAAAAACAGTCCGGGACCTTCGCGGAAAGGGGGACAGAATCGCCAAAGTCACATTTCGAGGTCTGTCGTTCTACACATGTGTTCTGGAGAACTGTGAGGATGAGGCCAGATTTGATGAGATGTTCCGATGGCCGATCGCCAGTAGAGTGGATGAAAACGAGATACTGGAGCTTCAAGTGTTCAACTACAGCAAAATCTTCACCAACAGAGTCATTGGAACCTTCCGGATGGTTCTACAGAAGGTGGCGGAGGAGGGGCAGCTGGAGGTGACAGACACACTCATCGATGACAACAACACCGCCATACGGACTAGTGTTACCGTAGACATCAAGTACACGACCATGGATGGGACAGTGGGGGTGTGGAGTGATGGGGAATTCCTGGACGTTCCGGGCGACCCAGAGGGAACGTTCCAGTTTGAGACAGACAGCCTGCTTTCCGGACACAGCCATGGATCAGGATCAGGAGTGTCTCCTGGACGATCCATCCACGGAATTCCCACTTTCAGGAAAGCAGGGAAAGGGGTATTCTCAGCCATGAAGCTCCACAAGACCAAGAGCTCCAGAGATGACCACAAGAAAGATGAGCCAGCCACCCTGGACATGGAGGATCTGGACAGGAAGGCCTTGCGTCTGGGAGGGTTTGGTGGTCTGGACCCAGACTGCATCTCCCTGGCGTCCGTCACCGCCGTCACCACCAATGTCTCCAACAAGAGGTCAAAGCCTGATATCAAGATGGAACCTAGTTCTGGGAGGCCTGTGGATTACCAgATTAGCATCACAGTGGTCGAGGCCAGGCAGCTGGTAGGCCTAAACATGGACCCTGTGGTCTGTGTGGAGATTGGGGAAGACAAGAAGTACACCTCCATGAAGGAATCCACCAACTGCCCCTACTACAATGAGTATTTTGTCTTTGACTTCCACGTCCCACCAGATGTCATGTTTGACAAGATCCTCAAGCTCTCAGTGATCCACTCCAAGAACCTGCTGCGGAGTGGAACCTTGGTTGGCACCTTCAAGCTAGATGTTGGCACAGTCTATTCCCAGCCTGAGCACCAGTTCTACCACAAGTGGGCCATGCTGTCTGACCCTGATGACATCACAGCGGGGTGCAAAGGTTACATCAAGTGTGACATTGCCGTGGTGGGGAAGGGGGACAATATCAAGACTCCCCACAAAGCCAATGAGACGGATGAAGACGACATAGAGGGGAACCTCCTGCTTCCAGAGGGAGTTCCGTTGGAGAGGCAGTGGGCGCGGTTCTATGTGAAGATCTACCGAGCTGAGGGCCTTCCCAAGATGAACACCAGCATCATGGCCAATGTGAAGAAGGCCTTCATaggggagaacagagacctggtgGACCCCTACGTACAAGTGGTCTTCGCTGGACAGAGAGGGAAGACTTCTGTCCAGAAGAGCAGTTATGAGCCCATCTGGAATGAGCAGGTGGTCTTCACTGAGATGTTTCCTCCGCTCTGCAAACGCATCAAGGTCCAGATACGAGACTCTGACAAAGTCAATGACGTTGCCATAGGAACGCACTTCATTGACCTGCGAAAGATCGCCAACGATGGTGACAAAGggtTCCTCCCCACCATGGGCCCAGCCTGGGTCAACATGTATGGCTCAACCCGTCACTACACTCTGATTGATGAGCACCAGGACCTGAATGAGGGGCTGGGGGAAGGTGTGTCCTTCAGGGCCCGCCTCCTCATCTCTGTTGCCGTAGAGATCCTGGACACCACCTCCACTGAGATTGTGAGCTCCACCGAGGTGCAGGTAGAGACTGTCTCCAACATCTCAGAGAGTGCCACAGGGAAAATAGAGGAATTCTTCCTATTTGGTTCCTTCCTGGAGGCCACCATGATTGACAGGAAGATCGGCGATAAGCCAATCAGTTTCGAGGTCACAATAGGTAACTACGGCAACCAAATAGACGGAGTGAGCAAGCCCACCGCAgctaagaagaagaagaaagagggaggaggagagagtgatgaggaAGAGTCAGAGCTGATCCAGCAGAACTCCAGTGAGGACGAGGCGGATGATGATGGGGACCTGGTGTCTGTGTCCTCCACCCCTCCCATGAAGCCTGTCATCACAGACAGGAACTACTTCCACCTGCCCTACTTTGAGAAGAAGCCATGTATCTACATCAAGAGCTGGTGGCAGGACCAGAGGAGACGACTCTACAACTCAAACATCATGGACAAGATCGCTGACAAAATGGAGGAGGGTCTGAATGACGTGCAGGAGGTCATTAAGACAGAGAAGGCCTATCCAGAGCGCAGACTCCGAGGGGTGCTGGAGGAACTCAGCACTGGCTGCAATCGTTTCGTCACTTTGGCCAACAAGGACCAGAACCAGGCAGGCAGAACCAAACTGGACAAAGAGAGACTCAAGTCCTGCATGAGAGAAATGGAGAGCATGGGGCAGCAGGCCAAGCTGATTCGCTCCCAGGTGAAGAGGAACACGGTTAGAGACAAACTGAAGAtggttcaaaacttcctgcacaGGCTCCGTTTCCTTGCCGACGAGCCCCAGCACAGTATCCCAGACGTGTTTGTATGGATGATGAGTAACAACAAGCGTGTTGCCTACGCCCGCATCCCCTCCAAAGACATCCTCTACTCCATCGTAGACGAGGAGACAGGCAAGGACTGTGGCAAGGTCAAAGCTGTCTTCCTCAGGCTGCCTGGTAAGAAGGGCTTTGGCCCAGCGGGTTGGACAGTGCAGGCTAAGATGGAGATATACCTGTGGCTGGGCCTCAACAAACAGAGGAAGGACTTCCTGTCTGGCCTGCCCAACGGCTTTGAAGAGAACAAGGCTCCCAGGACAAGCCCCTGTCTACAGTCTGTACCCCCCGTCAGTCTGGTTTACAACATGAAGCAGGTATTCCAGCTGAGGGCTCACATGTACCAGGCCAGGAGTCTGTTTGCTGCAGACAGCAGTGGCTTGTCAGACCCCTTTGCCAGGGTATTCTTCTCCACACATAGCCAGGTCACTGAGGTCCTGAGTGAGACTCTGTGCCCTACGTGGGATCAGCTGTTGGTGTTTGAGGATGTTGAGCTGTTCGGAGAGGCCGGCGAGCTACGAGACGACCCGCCTATCATTGTGGTAGAGGTCTACGACCAGGACACTGTGGGCAAGGCAGAGTTCATTGGTCGGACGTTTGCTAAGCCCATCACTAAGATGTGTGACGAGCACTACGGCCCTCCGAGGTTCCCCCCACAGCTAGAGTACTACCAGATCTACCGTGGTAACTCTACCGCCGGTGACCTACTGGCTGCCTTTGAGCTGCTGCAGATTGGACAAGGGGGGAGGGCAGAGCTTCCTCCCATCGATGGTCCGACAGACTCAGAACGTGGACCCATCCTCCCTGTACCCATGGGCATCCGACCTATCCTCAGCCGCTACCGCATAGAGGTTCTGTTCTGGGGCCTGAGGGACCTGAGGAGGGTGAATTTGGCCCTGGTGGACAGACCCAGGGTGGACATAGAGTGTGCAGGGAGAGGAGTCCAGTCTGCTCTCATTCAGAACTACAAGAAGAACCCCAACTTCAGCACCCTCGTCAAGTGGTTTGAGGTGGACCTGCCAGAGAATGAGCTACTTCACCCTCCTCTGAACGTCCGGGTGGTGGACTGCAGAGCGTTTGGCCGCTACACCCTGGTGGGTTCCCATGCCGTCACCAGCCTGCGACGGTTCATCTACAGCCCCCCAGACAAGACACACAACAACTGGGCCAGCGCAGCTAGACTGATGAATGGCTACATGGTCCTGACCAACGGGGGGTCCCATTCTCGCCCCTGCTCCCCTTACTCCCGCACCCCACCTCGCACCTTCTCTCGCCCCACAGGTGATGTCACAGTCAACATGGATGCCGACCCCTCAGTCAGGAAGATGGACACGGTGGTCAAGTTAGACGCTACGTCTGATGCAGTTGTTAAAGTTGATGTGAACGAGGAGAAAgaagaaaagaagaagaagaagaagaagaagaagggagaggtggaggaggacgaTGAGACAGACGAGAGCATGCTGGACTGGTGGTCCAAATATTTCGCTTCCATAGAGACACTGATGGAGATCCTCAGGGCTCACGAGGCAGCTCTGGCcgaggcagaggagagggaggaccagGAGATAGCAGCAGAGGGAGCAGATATCAAACCTGATGACCTCCCTGTAAAAGGCTCCAAGGGGAAGGAGAAGAGCCGAGACAAGAGCAGGaacaaggagaagaagaagagccaccatgcaggagaggagacagagaaacactccAGCAAACCCAAAGTGGACGAGCTGCTGGTGTACAACAAGGAGCTGGAGGCAGAGTATGATAACTTTGAGGACTGGCTCCACACCTTCAACCTGTACAGAGGGAAGGCAGGGGACGACGATGAAGCAGCCCTGGATGACGACAGGATCGTGGGCAGATTCAAGGGCTCCATGTGCATGTACAAGTTGCCTCTGTCTGAGGAGATCACCCGGGAGGTGGGCTTTGACCCAAACATGGGCATGTTCCAGAGCATTCCACACAATGACCCTATCAACGTGCTCGTGCGCGTCTTCGTGGTCAGGGCCACAGACCTCCACCCTGCTGATGTGAATGGGAAAGCGGACCCCTATGTTGTCATCAAACTGGGCAAGTCAGAGCTGAAGGATAAAGAGAACTATATCTCCAAACAGCTCAACCCTGTCTTTGGCAAgGCATTTGACATGGAGGCTACGTTCCCCATGGAGTCCATGTTGACCGTGTCAGTGTATGACTGGGATCTGGTGGGCACTGATGACCTCATCGGGGAGACCAAGATTGACCTGGAGAACCGCTTCTACAGTAAACACAGAGCTACCTGTGGCATCGCTAACAGCTACTCTGTACATGGTTACAACGTGTGGCGTGACCCGATGAAGCCAAGTCAGATCCTGGCAAAGCTGTGTAAGGAGGGCAAGCTGGACGGCCCCCACTACGGTCCCGGGGGCAGGGTCAAGGTCGCCAACCGCGTCTTCATGGGTGCCACAGAGATCGAGGATGAGAATGGTCTGAAGAAGCAGACAGACGAGCACCTGGCCCTGACGGTGCTGAAGCACTGGGAGGAgatccccagggtgggctgtaaaCTCATCCCAGAACACGTGGAGACAAGACCCCTACTCAACCCTGACCACCCTGGCATTgagcagGGGCGGATTGAGATGTGGGTAGACATGTTCCCCATGGACATGCCAGCACCTGGACCCGCCATCGACATATCACCACGTAAACCAAAGAACTTTGAACTGCGTGTTATTATTTGGAACACTGATGACGTAGTTCTAGAGGACGATGCTTTCATGACAGGAGAAAAGATGTCTGACATTTATGTCAGGGGCTGGCTGAAGGGTCAACAGGAGGACAAGCAGGACACAGACGTCCACTACCACTCTCTGACGGGCGAGGGGAATTTCAACTGGCGCTTCGTGTACCCCTTCGACTACCTGATGGCTGAGGAGAAGATCGTCATCTCCAAAAAGGAGTCCATGTTTTCCTGGGACGAGACCGAGTACAAGATCCCTGCACGCCTCACCCTGCAGGTCTGGGATGCTGACCACTTCTCTGCTGATGACTTTCTAGGTGCGATAGAGCTGGACCTGAACAGGTTTCCCCGCGGGGCGAAGACAGCCAAGCAGTGTTCTATAAACATGGTCCAGAACCAGGCAGAGCTGCCCTGCATCTCCATCTTCAAACAGAAGAGAGTCAAGGGCTGGTGGCCATTCGTGGCCCGTGACGAGAACGACGAGATGGAACTCacgGGTAAAGTGGAGGCGGAGCTTCATCTCATGTCGgcagaggaggcggagaaaagtCCTGTTGGTCTTGGACGCAATGAGCCTGACCCTCTGGAGAAACCAAAtCGTCCCAACACCAGTCTGTCGTGGATGCTGAGCCCGGTGCGTGTAGTGTGTATCCTAGTCTGGAGGCAGTACAAGCTGCACTGTGCTCTGCTGCTGGGGGCCGTCCTGGGACTTCTGTTCCTGGGCCTGCTCTTCTTCTCCCTGCCTTCTGCCCTCAGCTACAAGATCTTCAACGTCGCTGGCTGAACACACATTTATCAACCACACACACGCAAACGTAACTTTCTCTCCATGTGGCTGATCCCTGAATGTATTTGCATGTTAAATAGTTTGTATTGTACTGAAGTTCTAATGCGTTACATCTTATTCAATATTGTTGGTAACATTCTACTTTACTACTAGTTAACTCCCATTATGCACTTTATATTTTACATTGTGTTCAACATCAACTCTAAGTTGATAAAGTgatttattttcctcatcaataaaTTTAAGCATTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381224 lncRNA upstream 31043 27349659 ~ 27371054 (+) True G336723
TU381228 lncRNA upstream 61098 27334124 ~ 27340999 (+) True G336724
TU381234 lncRNA upstream 62086 27336318 ~ 27340011 (+) True G336727
TU381230 lncRNA upstream 65877 27334664 ~ 27336220 (+) True G336725
TU381223 lncRNA upstream 69216 27330960 ~ 27332881 (+) False G336723
TU382950 lncRNA downstream 77343 27601731 ~ 27602437 (+) True G338328
TU382980 lncRNA downstream 98987 27623375 ~ 27623670 (+) True G338358
TU382985 lncRNA downstream 101155 27625543 ~ 27625857 (+) True G338363
TU383001 lncRNA downstream 116097 27640485 ~ 27640826 (+) True G338379
TU383005 lncRNA downstream 123659 27648047 ~ 27648268 (+) True G338383
XM_021600692.2 mRNA upstream 206746 27186465 ~ 27195351 (+) True tcp1
XM_036976025.1 mRNA upstream 216648 27054628 ~ 27185449 (+) False LOC110522355
XM_036976027.1 mRNA upstream 216648 27099975 ~ 27185449 (+) False LOC110522355
XM_036976026.1 mRNA upstream 216648 27116411 ~ 27185449 (+) False LOC110522355
XM_036976024.1 mRNA upstream 397478 26998545 ~ 27004619 (+) True LOC110522356
XM_036975467.1 mRNA downstream 12874 27537262 ~ 27601564 (+) False LOC118964415
XM_036975468.1 mRNA downstream 100312 27624700 ~ 27664419 (+) False opn8b
XM_021600819.2 mRNA downstream 233045 27757433 ~ 27764552 (+) True LOC110522435
XM_036976043.1 mRNA downstream 276535 27800923 ~ 27962367 (+) False LOC110522440
XM_036976044.1 mRNA downstream 276536 27800924 ~ 27962367 (+) False LOC110522440
TU381040 other upstream 217127 27176381 ~ 27184970 (+) True LOC110522355
TU380919 other upstream 507260 26893135 ~ 26894837 (+) False G336464
TU381324 other downstream 66464 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1334328 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1390211 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1642130 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 1810981 29335369 ~ 29336939 (+) True G339928

Expression Profile