RNA id: TU381324


Basic Information

Item Value
RNA id TU381324
length 513
RNA type TUCP
GC content 0.56
exon number 2
gene id LOC118964415
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27537262 ~ 27601564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCCCCTGCCTCGTCATCCTCTTCTCCTATTCCGGCATAGCCTGGAAACTCCACAAGGCATACCAGTCCATCCAGAATGGAAACTTCAACTACGGACACATCGAGAGGAAAGTCACTCTGatgGCGGTGTTGATCAGCTCAGGGTTCATCGTGGCTTGGTCTCCCTACGTGGTGCTCAGCTTTTGGTATATGTTCCAGGGGAAGGCCAGTCTGGCCCCGCTGGTCTCCCTGCTGCCCTGCCTGTTCGCTAAGGGCTCCACGGCCTACAACCCTTTTATCTACTACATCTTCAGACGCTCCTTTAGACGCCAGCTCATCCAGCTCCGGGGGCTGATCTGCTGCTCTGCCCAGCCAGACACACCTTCGAGTGGGGAGACGGGAGAGGAGGGCAGACAGACTTTGAGGTCTGACCTACGACAGAGTCTCCCGGAAGAGAAGAGTGGAGCTCCTCTGGTAGGGGAGTTGGGAACTGCGGCGCTGGAGATACAGTCTGAGAATGAGTTGACAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381286 lncRNA upstream 136515 27451518 ~ 27454337 (+) True G336777
TU381251 lncRNA upstream 153801 27395375 ~ 27437051 (+) True G336742
TU381224 lncRNA upstream 219798 27349659 ~ 27371054 (+) True G336723
TU381225 lncRNA upstream 244779 27327879 ~ 27346073 (+) False G336723
TU381228 lncRNA upstream 249853 27334124 ~ 27340999 (+) True G336724
TU382950 lncRNA downstream 175 27601731 ~ 27602437 (+) True G338328
TU382980 lncRNA downstream 21819 27623375 ~ 27623670 (+) True G338358
TU382985 lncRNA downstream 23987 27625543 ~ 27625857 (+) True G338363
TU383001 lncRNA downstream 38929 27640485 ~ 27640826 (+) True G338379
TU383005 lncRNA downstream 46491 27648047 ~ 27648268 (+) True G338383
XM_036976028.1 mRNA upstream 66464 27402097 ~ 27524388 (+) False LOC110522432
XM_036976029.1 mRNA upstream 66464 27402097 ~ 27524388 (+) False LOC110522432
XM_036976033.1 mRNA upstream 66464 27402097 ~ 27524388 (+) False LOC110522432
XM_036976034.1 mRNA upstream 66464 27402097 ~ 27524388 (+) False LOC110522432
XM_036976035.1 mRNA upstream 66464 27402097 ~ 27524388 (+) False LOC110522432
XM_036975468.1 mRNA downstream 23144 27624700 ~ 27664419 (+) False opn8b
XM_021600819.2 mRNA downstream 155877 27757433 ~ 27764552 (+) True LOC110522435
XM_036976043.1 mRNA downstream 199367 27800923 ~ 27962367 (+) False LOC110522440
XM_036976044.1 mRNA downstream 199368 27800924 ~ 27962367 (+) False LOC110522440
XM_036976045.1 mRNA downstream 199398 27800954 ~ 27962367 (+) False LOC110522440
TU381040 other upstream 405882 27176381 ~ 27184970 (+) True LOC110522355
TU380919 other upstream 696015 26893135 ~ 26894837 (+) False G336464
TU380920 other upstream 696015 26893135 ~ 26894837 (+) False G336464
TU380925 other upstream 696015 26893135 ~ 26894837 (+) False G336464
TU380927 other upstream 696015 26893135 ~ 26894837 (+) True G336464
TU384407 other downstream 1257160 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1313043 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1564962 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 1733813 29335369 ~ 29336939 (+) True G339928
TU387608 other downstream 3780270 31381826 ~ 31382749 (+) True G342538

Expression Profile