RNA id: XM_021600882.2


Basic Information

Item Value
RNA id XM_021600882.2
length 2275
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110522461
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29717778 ~ 29727201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaagcggggctgggctcgagccgtgGCTGGGGAAGGAGTCGCTCCATCGCCATCCTCTCGCCACCATTGGAAGTttgttgtgcggcccatctcgcgTGACTTTTATTTGAGtcaagtatctttacttttactcaagtatgacaattgggtacttttttcaccactgaCAATTAGCTACAACATAGCTAATGGATATAACACAGATTTGGTGACACTTCTGGCTCAAAAGCGAATGTAGgaaccaggggggggggggtactgtacaTTTGTCTAACATAATCCGGCTAATGGCAGTGTCAAGGTGGAAGTGTGCGCTTCATCCTCCAGAGGGCTCACTTCTGATTGGTGAAAGGCTAGTTGGGGTGTGGTCAAAGGGCATATAACTGCATGTTATTGCTTTGGGGCTCTTCTGTTGGTTGTTGCTTCTAGTTGTATCTTCTATCCAGTTAAATCAGGACTCAGAAGCAGTGTCAATTAGGCTATCTAGTTGGCTAAACTAAACTTTCCTCTACACAACTGCCTCAGTCTCCACTCTTCTATTAGTTGAGTTGACTAAAATACCCATTAGTCCATCAGGTTTAGCCTAATCTCTTGGCTTCATACCCATCAGAGGGACACTCATCTCCTGCTCCTTCACCAGAGTGAAGATGTCTCTCCAGGCTCCGCTCCAACCTGCAGTGGTCCTGTCTCTGGTTCTGGTTGTGTTGGCTCTGACAGAGCTGTCCCGTGCCCAGCTCCAGCCCAAGGCTTCTGTCCTGGATTTCTCAGCCAGCCTGGGTAACCTCCTCCCCAGCCTCAGCCGTCCGGCCAACTCCAGCCGGATCTTCTACGGGGTAATGTTTGACGCTGGCAGCACTGGGACACGCATCCATGTCTACACCTTCATACAGAAAGACCCTGAGGAGTTACCAGTGCTGGATAATGAGATGTTCCATTCCGTCAAGCCTGGTCTGTCGGCATACGCAGACATGCCTGAAATAGGTGGGTACACAGTGAGGCAGCTTCTTAAGGTGGCAAAGAAGACTGTCCCGCAGCTGGATTGGAAGAGAACCCCACTGGTCCTGAAAGCTACAGCAGGATTCAGGCTGCTGCCCCCAGAGAAAGCCCATGCTCTGCTGGAACAGGTGCAGGACGTGTTTGATGAATCTCCCTTCTTCGTCCCAGACGACAGCGTCAGCATAATGGATGGTACAAATGAAGGAATTTTGGCGTGGGTTACTGTGAACTTTTTGACAGgtcacctGTATGCTGAGACCAGGAACACAGTGGGGATTCTAGATCTGGGGGGTGGATCAACTCAAATCACTTTTCTACCCAAATCCAAGAAAACCATTGTAAGTTCTCCTGCTGACTACATTGCCAGATTTGACATGTTCAACTCTACATATGAACTATACACTCACAGCTACCTGGGTAATGGACTGATGGCAGCCAGACTGGCAGCCCTAGGAGCactgggggcagaagGGTTGGAGTGGAGAGTGTTCAAAAGCGCCTGTCTGCCCAAGAAGTTCAGAGAGGAGTGGAGCTTTGGAGGACTCACCTACACAGTCAGCGGGATACCTGATGGTTATGCAGGATACAAGCTGTGTTACCAGGAGGTGTTGAAGGTGGTAAAGGGAATAGTTCACCAGCCCTATGAGTTGAAAGACACCAGTGTGTTCTATGCTTTCTCCTACTACTTTGACAGAGCCGTGGACGCAGGCCTTattgATGGGACCCAAGGAGGAATGCTGGAGGTCAGAGACTTTAAGAGGGGAGCTAAAGAGGTGTGTAACAAGATGTCTAAGTACCGTCCTGTCAGCCCCTTCTTGTGTATGGACATGACCTACATCACCTGTCTGCTCAAAGATGGCTTCGGCTTCAAAGAGAACACTGTACTGCAGCTGACTAAGAAGGTGAACAATATTGAGACAAGCTGGGCGTTAGGTGCCACGTTCAAACACTTCCAGAACCTAAAGATCCACTGAGAGACATAAGCCACAGGGTTGGGTGGGCAGGTGGGATCACTGGTTTACATGGTGCTCAACAAGAAATGGACTGAGGAATACTTGTTTTAAACTGATAAGCCTTTGTGTCTtgtgaaatgtaatgttttatagATATGCCATATTtgcattttacatttgagatgaCATTACAATTGTTACCCAACACACATAACTGGTACTATAGTTCAGTAGGTCTGTTGTTTTCATGTGACTGGCTGCTATACTGTAGCCttgtattatatacacacacgtcTCTATTAAAGCACTGGGGGCTGAAACTCAA

Function

GO: NA

KEGG:

id description
K01511 ENTPD5_6; ectonucleoside triphosphate diphosphohydrolase 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384954 lncRNA upstream 32172 29685352 ~ 29685606 (+) True G340107
TU384950 lncRNA upstream 33565 29683820 ~ 29684213 (+) True G340106
TU384922 lncRNA upstream 69994 29647462 ~ 29647784 (+) True G340081
TU384848 lncRNA upstream 219244 29498147 ~ 29498534 (+) True G340011
TU384757 lncRNA upstream 256582 29460034 ~ 29461196 (+) True LOC110522452
TU384974 lncRNA downstream 10792 29737993 ~ 29738401 (+) True G340125
TU385004 lncRNA downstream 42605 29769806 ~ 29770443 (+) True G340153
TU385008 lncRNA downstream 71058 29798259 ~ 29803141 (+) True G340155
TU385038 lncRNA downstream 99070 29826271 ~ 29826549 (+) True G340182
TU385050 lncRNA downstream 124039 29851240 ~ 29851549 (+) True G340193
XM_021600876.2 mRNA upstream 10977 29686032 ~ 29706801 (+) True LOC110522458
XM_021600865.2 mRNA upstream 76661 29633896 ~ 29641117 (+) True LOC110522456
XM_021600872.2 mRNA upstream 77306 29633682 ~ 29640472 (+) False LOC110522456
XM_021600884.2 mRNA downstream 60367 29787568 ~ 29798140 (+) True LOC110522463
XM_036976075.1 mRNA downstream 111168 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA downstream 112665 29839866 ~ 29842910 (+) True LOC110522467
XM_036976080.1 mRNA downstream 214975 29942176 ~ 29952127 (+) False LOC110522470
XM_021600894.2 mRNA downstream 214976 29942177 ~ 29952127 (+) True LOC110522470
TU384729 other upstream 380839 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 550782 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 802239 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 858623 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 2116222 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1654625 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1690754 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1723932 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 2058664 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 2967785 32694986 ~ 32704371 (+) True G343958

Expression Profile