RNA id: XM_036976104.1


Basic Information

Item Value
RNA id XM_036976104.1
length 9562
RNA type mRNA
GC content 0.50
exon number 42
gene id LOC110521078
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31632668 ~ 31749603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTACCTCTGTGCCAGATTTTGTGCTTTTATCACAATACGCACGATAGTGCCTATTTCTTTCAGTTTCGCCACCTAGCTACAACGACCGCAGTTTCCATTCACAATATTGTCCGCTATCCTTCCAATATACTCTCGCGTCCCACAGGACAGCAGATGCTGTGACGGCAGTGTGTGACGGTCGCCATGATGAGCTGGGGTTTTGCCTGCAGCAAGCTGTAGTTCGAGAACGGCAAGCGACCGACGTGGGAAGCAAGGGGGAAGGCAGTGTACTGGATTGGTATGAGCAAGAATGCAGCTTTTTTCTTGACGGGAAAAAGCTCAACCCCTCAGAGAAACCGCATTTTCGACGGATACAGCAATGGACATATATTCGAACCATAGTTTTAAACTGTGAAGAGGGCCAGGCAGTTGATTTTAAAATAATTGAATTTAAACGAAAAAACGAGCTAGTTAAGCCTTGCGCCCTTCTATTCTCAGACTCAACAGAGGAGGGGCATTGCATTGAGGCTTTGTAGCATTGCAGATCTAGTGTTGATGCATTTTTTTCCGCTGCAGTTTGGATAACCACATATCAACATCTCAGGGGATTGTTATAACTGCATTCTCACGGGTAATATTTTCACCGGGGGTATTTTTGACAGGAGAAGACTGGAAAAAATACGTAAGGAAATACTACAAGCGGCTTTCATTAGCCTACGTCAAAATCTGCTGGCCAGGGCAGGGTCTGCAATTGTGAGTTCTCCTTTGTGTTTTGGGGGAATAGGATAAATAAAATGAGGAAATATTACATGGCTCACTCACCTCCGAGATACTCTATATATACCTTGGTGAGAGGTGGATCATGATAGTTCTATTTTAGCTCGCTATTAGCTTGCTTGCCTCAACGTTTTTATTCATTTTGCTACAAGGTGAGACCGAGACAAGCTAAGCGAACTTCTTCTGTTCGTCCCTGGTCAGCCGGAATATAAGGTTTAGCTAACTATTTGAGTTAATATAATTTCCTCTACCAGCATCACCTGACTACAGTTTGAATCATGTCGGGAGAGGTCCGTTTGAAGAAACTGGAAAAGCTGATCCTGGACGGCCCAGCTCAGTCAAATGGCCAATGCCTTAGCGTGGAAACGCTATTGGATATCCTTATCTGCCTTTATGATGAGTGCAACAACTCACCCCTCAGAAGGGAGAAAAACATCTTGGAGTTTCTGGATTGGGccaaACCCTTCACCTCCATGGTCAAACAGCTGCGCCTACACAAGGAGGACTTTGAGATCCTCAAGGTGATTGGACGAGGAGCCTTTGGAGAGGTTGCTGTAGTTAAGGTGAAGAATGCAGACAAGGTGTTCGCCATGAAGATCCTCAATAAGTGGGAGATGCTGAAGAGAGCTGAGACGGCGTGTTTCCGGGAGGAGCGGGACGTGCTGGTGAACGGGGACAGCCAGTGGATCACCACCCTGCACTACGCCTTCCAGGATGACAACTTCCTGTACCTGGTGATGGATTATTATGTGGGTGGGGACCTTCTCACCCTGCTTAGTAAGTTTGAAGACAGGTTGCCGGAGGACATGGCAAGATTCTACCTGGCTGAGATGGTGCTGGCCATCGACTCAGTGCACCAACTGCATTACGTCCAcagGGACATCAAGCCAGACAACATCTTGATGGACATGAACGGTCACATTCGCCTGGCTGACTTTGGTTCCTGCCTCAAACTCATGGAGGACGGCACGGTCCAGTCGTCAGTTGCCGTGGGGACCCCGGACTACATCTCTCCGGAGATCCTGCAGGCGATGGAGGATGGGAAGGGGAAGTACGGTCCAGAGTGTGACTGGTGGTCCCTGGGGGTCTGCATGTACGAGATGCTGTACGGGGAAACCCCCTTCTACGCCGAGTCACTAGTGGAGACCTACGGCAAGATCATGAACCACaagGAGGAGTTAGGGGCTGCTGAGCGTTTCCAGTTCCCCCTGCAGATGACCGACGTGTCCGAAGACGCCAAGGACCTGATCCGACGCCTCGTCTGCAGCCGGGAGCACCGCCTGGGCCAGAACGGCATCGACGACTTCAAATCTCACCCCTTCTTCTCTGGCATTGACTGGGACAACATCCGTACGTGCGAGGCCCCCTACATCCCAGAGGTCAGCAGCCCCACAGACACCTCTAACTTTGACGTGGACGACGACTGTCTCAAGAACTCAGAGACGATGCCCCCTCCCTCACACACGGCCTTCTCTGGACACCACCTGCCCTTCGTAGGTTTCACCTACACCAGTAAATGTACCCTGTCTGACCGGGGCTGTCTGAGGGAGGCAGGTGGTAGCAGTCAGACACAGATGGATGTATGTGTCCAGCGCAGTCTGGAGGAGAGTCTGGCCACCGAGGCGTACGAGAGGAGGATACGACGCCTGGAGCAGGAGAAGACTGAGCTCAGCCGCAAGCTGCaagAGTCCACCCAGACAGTCCAGGCCCTGCAGCACGCGTCAGGAGAAGGACCAGCACCCGTCCCCTCTAACAAGGAGGTGGAGATCAGGAGTCTGAAGACTGAGATTGACATCCTCAAGAAAAAGATTGCAGACTCAGGTCAACAAGAACATGAGTTAGAAGAAGCTTCATCAGTccgtagagagatggaggattcATCTAAACACATCAGGAACCTGGAGAAACAGATGAAGAGTCTCAACCTGGAGAAGGACGACCTGCACaagGACTTAATGGAGGCCAGCGGCAAGATGAAGAGTCAGTCTAAGGAGTTGAAAGAGGCCCACAGCCAGAGGAAGCTGGCCATGCAGGAGTTCTCCGAGCTCAACGAGCGTCTGACTGACCTCAGATCAGCCAAGCAGCGCCTGGTCCGTCAGCTCcgggacaaggaggaggagatggagggttgGTCCCAGAAGGTGGAGGCTCTACGGCTGGAGATGGAGTCCCAGTCTGAGGAGCAGACAGCTGATGCTCAGAAGGAGAGGAAACTGAGAGAACGCTCTGAGCAGTACAGCAGACTGCTAGAGGAGGAGCTGGATGGACTCAAGAAGCAGGTGGGGCCATCAGCCTCTGTGGTGGGCTCGGACCAGAGCCAGGAGGTGGGGAAGCTGCGGGCCGACCTGGAGAAGAAGACGGGGTTCTACGAGGAGGAGCTGAGCAGGAGGGAGGTGCAGCACGCCAACGAACTCAAGGTCCTCCGCAAGGAGCTCCGCGACGCTGAGGGACAGCAGCTCACCCTGCAGAAAGAGATCCTGGTCCTCAAAGACAAACTGGAGAAGACACGCagggagagccaAAGCGAGCGGGAGGAGTTTGAGATGGAGTACAAGCAGAAGTATGAGCGGGAGAGAGTCATTCTGACCGAGGAGAACAGGAAACTCTCCAACGAACTGGACAAGctgACGCCTATGTTTGAGAAGCTGAGCATTAGcaacagacaactggaggaggagatgagggaactGGCTGACAAGAAGGAGAGTGCTGCTCACTGGGAGGCCCAGATCACTGAGATTATCCAGTGggtgAGCGATGAGAAGGATACGCGAGGCTATCTCCAGGCTCTGGCCAGTAAGATGACTGAAGAACTGGAGGGACTGAGGAACACCAGCCTGGGAGCCAGGGCTACGCAGGACATGCCGTGGAAGGTGCGGAGGTTTGCTAAGCTGGACATGTCAGCCCGTCTGGAGCTGCAGTCTGCACTGGACGCTGAGATCAGAGCCAAACAGACCATCCAAGACGAACTGAACAAAGTCAAGGCCTCCAACATCTCCACTGAGTGtaaACTGCAGGAGTCGGAGACTAAGAACCAGGACCTGCTGGCTGAGATAGAGAGGCTGAAGAAGGATACAGAGGAGTTCCGCCTGCGTAGGGGTGTGAAACACCAGGACTCCCAGAACTCTTTCCTGGCCTTCCTCAACGCCCCCACCTCAGCCCTGGACCAGTTTGATCGCTCTCCATCAGTTGGGCCAACTAGCAAAGGCAGACGTGTGGACTCTGTGGATAACTTCACTCCCTCCAACACCCCATCCAGGGACGAGGACTCCAAAACGTCTCGCTCACGGTCGCCCTCCATGGCCAGCGACGTGGAGCCCATTGAGTTGATAGACCCACGAACAGTCCAGACCCCCACCATGCGACCAGGAGGCTATGGTAGTATCGGCCGCTCATCACCCAAGCCCAAAGCCCACCAGTTTGTGGTGAAGTCCTTCAGTGCTCCCACCAAGTGTAACCAGTGCACCTCTTTGATGGTGGGACTCATTCGCCAGGGCTGCACCTGTGAAGtgtgTAACTTCTCGTGCCACGTGACGTGTGCTGACAAGGCTCCAGCGGTGTGCCCCGTGCCACACGACCAGACCAGGGGGCCGCTGGGCATCGACCCCCAGAGGGGCATTGGCACCGCCTACGAAGGACACGTCAGAGTGCCCAAGCCCACAGGGGTGAAGAAGGGTTGGCAGCGGGCGGTGGCGGTGGTGTGTGATTTCAAGCTCTTCCTGTACGAGCTGGGAGAGGGCAAGACCACAACGCCCAGTGTGGTCGTCAGTCAGGTCATAGACATGAGGGATGAGGAGTTTTCAGTCAGCTCTGTTCTGGCGTCGGACGTCATTCATGCCAGTCGCAAGGACATCCCATGTATATTCAGGGTGACGGCATCCCAgctctccccctcctccagtcACAAGCCTTCCATCCTGATCCTGGCCGACAGCGACCACGAGAGGAACAAGTGGGTGGGGCTTCTCAACGAGCTGCAGCGCATCCTCAAGAAGAACAAGCTGAAGGAGCGCTTCGTCTACGTGCCCAAAGAGGCCTACGACAGCACGCTGCCGCTCATCAAGACCACGCAGTCCGCCGCTATTATAGATCACGAGCGTGTTGCCCTGGGCAATGAGGAAGGCCTTTATGTCATCCATGTCACCAAAGATGAGATCATCCGTGTTGGGGACAATAAGAAGGTCCATCACATTGACCTGGTCCCCCAGGAGCAGCTCCTAGCAGTCATCTCCGGCCGTAACCGCCACGTCCGTCTCTTCCCCATGGCCGCGCTGGACGGACGGGAGATGGACTCCTACAAGCTGACCGAGACCAAGGGCTGCACGGCGCTGGTGTCCGGCTCCGTCCGAAACAACTCCTTCACCTGTCTGTGTGTGGCCATGAAGAGACAGGTCATCTGTTACGAGGTGAACAAGAGCAAGGCACGTCACCGCCGATTGCAGGAGCTCCAAACCCCAGGTCCCGTCCAGTGGATGGGTCTCCTGAGCGAACGGCTGTGTGTGGGCTACCAGGCTGGCTTCACGCGCTACAGCATCCACGGGGACTGTGCCCCGGTCAGCCTGTTGCACCCCGAGGACCACACCCTAGCCTTCATATCCCAGCAGGCCCTGGATGCTCTTTGTGCCGTGGAGATCTCCTCCAAGGAACTACTGCTCTGCTTCTCAGCCATAGGGGTCTACGTGGACTCGCAGGGCCGCCGCTCGCGCCAGCAGGAGTTGATGTGGCCTGCCGTGCCCAACTCTGCCTGTTACAACGCCCCCTACCTGTCAGTGTACAGTgagaatgctgtggatgttttTGATGTCAACACCATGGAGTGGATTCAGACCATACCATTGAAGAAGGTGCGACCTCTGAACCCGGATGGATCCCTGAACCTCCTGGGTCTTGAGACTGTGAGGCTCATCTACTTCAGAAACAAGACTGCAGAGGGTGACGAGTTGGTGGTTCCTGAGACGTCAGACAACAGCAGGAAGCAGATGGTTCGCAGCATGAACAACAAGAGACACTTCTCCTTCAGAGTccctgaggaggagaggatgcaGCAGAGGAGGGAGATGCTGAGAGACCCAGAGATGAGGAACAAGCTGATCTCCAACCCCACCAACTTCAACCACGTGGCCCACATGGGACCTGGAGACGGCATCCAGATTCTCAAAGACCTGCCCATGAACTTGCGTGTTCAGGAGAGTCGTGCTGCAGGCTTCAGTGGCTCCGTGTCCATCCCCTCCATCACTAAGAACAGAGCCGAGCCGGGACGGTCCATGAGCGCCAGCAGTGGACTGGGCATCCgttcgTCCTCTCAGAACGGCAGTGCGTTGAGGAGAGAGCTCTCTGGAGGTAGCTACAGCTCTAAGCGCCAAACCATGACCTCTCCCTCCGAGAGCTCCTTGTCCTCCGGAGGGGGTATGGACGGCTGCAGCGACGCACCCCTCTCCCAATTCGACAGAGAGTGGCAGGCGGTCTCACCATCGGAGAAGACCCCTGATCTGAAAAGGGCTTTAAGGACCCTGCTTAGTAAGATGAAGgaCTCTGACTCACCCCGTCACTCCACGGCGTCCAACAGTTCTACATTCAGCAGTCCCCCCAGCCCGGCCTCACCCCACAAGACCAAGTCCCTCTCTCTGGAGAGCACAGACCGCATGACCGGCTGGGACACATGAGTGACAGACAGCACACCCTTGCAATCCCTGACCctcactgccccccctccccctcccctggcTCCGCCTATCCCCTGCCCACGGAACTGCACCTGCTGCCACAGGCCCCTCCCACTTACTTCACCTTTGACTGGAACTGAGATCTACAAACAAACACAGGGAAAGGAAgtgtttgaccaagaaggaaataCTAGGAGAAGATATGTTAATGCGTGTATGAGTAGTGTTTGTGTGGACGCCTGTGTGTTTTTTTTGAAGGGGGCATACTTAATAGGAATGAAAATTGAAATCCTTCCATCTGCTTTGTAGCTGATAGCTAGAATAAGCGAAGCGCTAAGTTTAATTGAAAGTACTTTTGATTACAGCACTACTAGCCCCATGTTGAGTATCTCCCCATGTAATTGACAACTCCTGTAAAGAGACACAAACCTCAAGTAGCGACAAGAAGAAGAGGATGAATATGGAACAATAACAGATCATTTGATACGTGTACATAGCAGCCTTTGGGTTTGGGGGGACCACCTTTTATTTATTAATCAGAACAGGATGTTTCACAGAGGAGAAAAAGAGGATGTTTCCTCTTCCTTTCAGTTGCTTTCTTCCGGAACGGTAGTTAATATCAGAAGAAGAGGGGGCATTCCATTGACAATACAGGGCTCACACAAAAAAAGCAATGATGTTTATTTTTCTCATGAAAGTGAAATATGTGCAGTGACTTCATTTGTTTGTACCATCAGTGAAAAGCTACAGTAAATCAGTGCAAAAAATACAACTATGATGAGGGGTATTTTAACTCTAGGTTGACCCCTGACCTCACGTGTTTCATGTTCTAGAATTCTTAGGGACAGCAGCGTTTAGAAGCAGACCAAACATTCTATGATGACATCACAGCTTCTTCTGCCACTTCCTTATGACATGGCCATTGACCTCATCCACTGAACTGGGACCATTATCTGTGTAGTGTAGACCTTGTACCGTAAGTACAGTAATAGACCAACCACCGACCAATTACAAAAAGCTGATTCCCATCACAACAATGTACATAAGTTAAAAGTAGAGAATAATATATAAGGGAAATACAGTAGAGAAATACGTGATGGGAGAAGATCTGGGATTCCTTTTTATTTTTTGAGAATGATTTGGGGTTATATTCACACGAAAGCCATTTTAAACCACAGTTCTTTTTATGATtgcttttagattttttttttacaacttatTTTTATTTCATGTATGAGACAAACCGCCGAGTGTTATTTTGATTTGGGTTTGAGGAAACTTATTATGGGTCACATGGACCCGTGCTGTTGAGTGAATATGTGCATTTATTTTAAGCTAGTAGTCACAGATGCATTCACACTTAGACACACAGGTGTTTCCCCCTCCACTCTTTCCACTATGATCCACAGTTAGATCAGTTGAGGGGGATGTATATTTCCAAACTGATAGTGATTCCCTGTGGTACTGACCTGTGAACCTCAAATATGTTCCTTTGACTTCTAAGAGAGATTTTGGAAAGCTTGTTATAACCAAAAAAGAATGACTTAAATCTTGAGTCTTCATTATTTTTCAGAATGTTTCAATAGATTAGGGGAAAAAAGAATTAACAGACAACGCTGGGCTAAAATGGAGGTTTAAAAATGTCACCGTAGAATTCTTTTACAAGGCCAACGCGTCATTTCTGTTACGTTCTTACTATCAACTGGTAATCTGTGTATTGCTGTCTGCTAATGCAATCACCTTCATGTAGACCAAAACTGGGGTCCATTACATTTTAATTCGGTCAACTGAAGTTCCATTCTAATTCTCCTCAATGCCTCTCGGAGATGGAATTTCTGTTTACTtacctgaattgaaatggaattgaccccaatcctAATGCACACCACAATGGTGTCGATCGTATTTATGTGTCGAACGGAAACAATAATTGACTTGATATTGTTTCTGAGCATTGGTCATGGGCTTAGATCAACTGCCTCTTATCTctgaagaggaagggagaggggactcTTAttctggaaaataaatattttctaATGAGGAATTGTTTCTATGTTACAGACCATTTAATGAATTACAATTGTTACTTACTGCTGAAATGGACCTTCTGTTTGGGTGGGTTGTGGTGTACCAAGTAGTATACATGGCAGGTTATCTTCAGCTATCCTATTAAGTGTATAAAAAGATGACACACAAATTCCTGCCATTGGAGTCCTaaatcttaaccctaaaccacagttctgttctgttcccttGTCAAACACagccatgtatctctagcctgcTCATGCCACGTGGTTTTGAAAACCATTTTATATTGACGTTGAAAAATAAGAATTTCTCTGGAAGAGTCAGTCTCGCTAAGCTGGTTTTACTCAACCGTCTCAACTTAACTTATTCCCCTCTCTTAATATTTCCTTTTAAGCTACCAAGTCTCCCTATTCATATCTGCTGGACCTTATCTGTAGAATGTATTTGCTAAGAAAGAGGAAATATCTTAGTCTGAGTATTTTAGACCGGGCTTTAAATTGTACATCccacttctttaaaaaaaaaaactcaggaATGTCACGACCAATGATTATTTTCATCCTAACAATTAAAATGAGTGTGACAGAACAGTCTATACTTGGGAAATAAGAGCTCAATTTAGTCGCAGTGTAGTTGTGACTAGGTGTAAGGGTCGAACAATTCAGCAAAGTGTTTTGAATCGAGGATGAGAAGAGGGGTGAAAGGCCGGATGGAGGGTAGTAGTTTGAGGTTGAGGTGCCACCATATTTGTTTTTAAGAAAACGCCTTTGCATTTCAGTGAGGTCTTAAGTTCCTTCCATATTATTTAGCTCTTTCATATCACATTACACTTTTTTTTCTAGGATAGCTTTGTAATAATTTGTACAGTTTCGCATGTTATAGATGTAATCATTTTTTTGTTTTGGATTAGTTTTTAATTTTGGTTTGGGAGTTTTACTGAGGATACCCACTACAGGTGATGTAGATTCTTTTTGCACAGAAATATTTAAGGTGTAAGGTCAAACAAATAATGTATGGAAACTGGCTCATTAAGAGAGCTCATTATATTAACCTGACTCCGATGTATTTCAATAAAACGGAGGGCTGTTACAAATACGGCTTCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387720 lncRNA upstream 80091 31552290 ~ 31552577 (+) True G342624
TU387719 lncRNA upstream 81092 31551362 ~ 31551576 (+) True G342623
TU387718 lncRNA upstream 81587 31550494 ~ 31551081 (+) True G342622
TU387717 lncRNA upstream 85181 31547213 ~ 31547487 (+) True G342621
TU387715 lncRNA upstream 89768 31542200 ~ 31542900 (+) True G342619
TU387818 lncRNA downstream 3576 31753179 ~ 31753490 (+) True G342690
TU387819 lncRNA downstream 3938 31753541 ~ 31753762 (+) True G342691
TU387821 lncRNA downstream 9234 31758837 ~ 31762818 (+) False G342693
TU387825 lncRNA downstream 9234 31758837 ~ 31762818 (+) False G342693
TU387826 lncRNA downstream 9234 31758837 ~ 31762818 (+) False G342693
XM_036976097.1 mRNA upstream 9588 31607865 ~ 31623080 (+) True LOC110521077
XM_036976093.1 mRNA upstream 127068 31470148 ~ 31505600 (+) True LOC110522497
LOC118964493 mRNA upstream 173409 31456014 ~ 31459259 (+) True LOC118964493
LOC110521075 mRNA upstream 177342 31422817 ~ 31455326 (+) False LOC110521075
XM_021600924.2 mRNA upstream 210611 31418466 ~ 31422057 (+) False LOC110522493
LOC118964494 mRNA downstream 54143 31803746 ~ 31808383 (+) True LOC118964494
XM_021600937.2 mRNA downstream 230992 31980595 ~ 32015870 (+) True LOC110522501
XR_002473332.2 mRNA downstream 278437 32028040 ~ 32052239 (+) False tdrd6
XM_021600940.2 mRNA downstream 278437 32028040 ~ 32052842 (+) False tdrd6
XM_021600939.2 mRNA downstream 278438 32028041 ~ 32052842 (+) True tdrd6
TU387645 other upstream 181192 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 213412 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 249919 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2295729 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 2465672 29166518 ~ 29166996 (+) True G339830
TU387844 other downstream 36262 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 945383 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1722449 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1727090 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 1802524 33552127 ~ 33554003 (+) False G344647

Expression Profile