RNA id: XM_021600937.2


Basic Information

Item Value
RNA id XM_021600937.2
length 3027
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110522501
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31980595 ~ 32015870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACCACTCTGTGTGAGggcgacagggagagagagagtcgtgATACACACGGTCTGACGCTGCGCTTCATTGTGTCCTcagcgagcgtgtgtgtgtgtgtggacggtcCTACTTACTTGCAGAATCCTTGGAACTGCATCAGTGATTTTCGACGAGGCTCATTTCTTCCCAAGAAAACGTCACCACAAGCCTCGACAAGACGTTTGACTAATAGTCTCTGTCCGCACATATAACCTACTCTGAAGAAGAGAGCAAAGACCAGTTAACTTCGCACTCTTGCAagATAAAATGGGAGCGAAAAACAGCAAGCTGACCCCAGAGGTGATGGAGGATCTGGTAAAGAGCACAGAATTTAACGAGCACGAGCTGAAACAGTGGTACAAAGGCTTCCTCAAAGACTGCCCCAGTGGACGACTCAATCTGGACGAGTTCCaacaactctatgtgaagTTTTTCCCGTACGGAGATGCATCAAAGTTTGCCCAGCATGCGTTCAGGACCTTTGATAAGAACGGAGACGGCACCATCGACTTCAGAGAGTTCATCTGTGCCCTATCCATCACATCGCGAGGCAGCTTCGAACAGAAACTCAACTGGGCCTTCAACATGTACGACCTGGACGGAGACGGCAAGATCACACGGGTGGAGATGCTGGAGATCATCGAGGCCATCTACAAGATGGTGGGGACTGTGATCATGATGAAGATGAACGAGGATGGCCTGACGCCCCAGCAGCGAGTGGACAAGATCTTCAGCAAGATGGACAAGAACAACGACGACCAGATATCACTGGACGAGTTCAAAGAGGCAGCAAAGAGCGACCCTTCCATTGTATTACTCCTGCAGTGTGACCTGCagaaatagaggagagggaggattgAGAACCACCACGGACTCCATTCAGTTTGCAGCTATTTCCACTGGAAAAAAATATTGCTTGGACTACCTTTCAATGGATCCGCTTCTTGTGTTTGAAACACTTGTGTGCATGAGAATGTTAATTTGCTATAAAATatttacatatacacacacacctactgagacACACCCCACGAAGATACACACGCATCACCACACACTCACTACATATTCACACCACGCACAAATATATTTAGagatatataaatattatttaaattatttaaaaTCAACTGCCAAAATGTAAAGTGTGCAATGTATTTTCCATAGATACCGTCTCAATCCACTGGCGCTTTAGCATCAGTGATGTGCTATGTTGAATTACGCTACTACTTATTGTTCTGAGTTTACTGACACTAGCTATGTGTTTCATATATTGAGTAATGTCAACCAAACCAAATTCCTATGGTAACGTAACTGTTTCTGATAAACCATGAATCCATTCTTCTAAAAGATTAGATTTGGATAGATGAAGAGATGGATTAGTAGCCTATTCATCAAACACTTTTCCTTCCAAACGTGCTTGTACTGTTGGTGAAAATAAATGTAGTTAATTTGCATGCGTTTAGGTTTCGCCTTAAAGATAATCTCCTTAATTTTGCATTATATTAGAATAATGAAGACAAAGCCTTATTAATGAAATGCAGTTAGTTAAAcataaaatataataataatttaataggAAAAATCATATTACCGTATAGATCCTTCTACAAGTATTGATGTATGGGATGTATTTTTTGTGTTTGGTCATGACATTCTTTTTGACTGCCGTACCTGTGGGAGCATGAAACATGtagataataataatagttaTGATGCTAAGAAATCCCTGTTGCATCTCTATTTAGGAATGAGGAGATATTGAATGTGGCATATTTAACAATGACAAAACCAATAGTCAACAAAAATATTTGTCTTAAAGAAATGAAATAAATTGAAATAAAAGCATCAGTATTGTCAGGGGAATTATACCCTGTGAGTCATAACCAATGAGAGGTTGTAATATAAAAAGCTATCTGAAAATGAATCTCAGCCCTTTAACAATGAAGAGGTTTTAACTGTATTTTATCCTACCTACTATTGGTCCAATTAGTTTTAGTCCTATGTCATCACACCATTTCTTCAATGAAGATACAGGTTGCATATCAATGTGCTGAATTCGACGAAGTTCCTGTCATGAGTTTATTAATACCACTCATAggtgtaaagaaaaaaataactaAGGCCAGTATAACATTGTGTTAAACATCGATCAGTATAACCTCATACTGTTTTGTCTCTCTCAGTTAAAAAAATGAGTGTTTAAAAACAATGTCTTAAAGGAACTAGTGAATGCCATTCCTAATGAACCAAGCCAAGAGGACTAAACCCCTTAAGCCATGTGTTTTGGTAGGCTATACAGTTTGCCCAAAGTGTACCTAACAATACGCTGCTCTTTATTGTTAGAATTTTTCTACTTTTTTATTCCTCTCTCACATACTGAAGCATACAAACTGTACAGTAGCTTCTTCCTTTTCAGGTGCAGTGTATCCTATCATCCACGCAAGACACCAGCTTGGAAATAGCCTCGGacacctagcctggtcccagattggTTTGTGCGGGCTTACAACTCCTATTGGTCATTGTAACGGCACaacataggagttggcaagatggcacaaacagatctgggaccaggctgtgagACCCCAGCCTGACTGGATAATATTTAATAATTCCCCTGTACATATTAGTTTAAAGTAGACCCTGCTTGTATAAATCACTATTACAATTTAGTAACTAACTACCCATTTTGTTTCACATGTCATCTGCATATTTGGGAGGAGTTATGCTAATCGTATTCAAATTGACCTGCAATGCCAAGACCAAATCCATCACAATTCCTCAAGAGATTAGGCTGACTGTCATCTAAAACTTTCCATGAACATATTTGCCCAGAAATGTTTGTACTGAAAAAAAACTATCAGATACCAAATGTAAACAATGGCAACCATGTAAACTAAATGATTATGTTGTACATGTAGCATGTATTGTGTCCCTGATGACATGGCTGCGCTAGTCCTTGTGTTGTGATTTAAACTAATAAAATAACTCTATGGGCT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388261 lncRNA upstream 58501 31921553 ~ 31922094 (+) True G343068
TU388241 lncRNA upstream 79550 31900581 ~ 31901045 (+) True G343051
TU388239 lncRNA upstream 82378 31897935 ~ 31898217 (+) True G343050
TU388227 lncRNA upstream 88017 31892281 ~ 31892578 (+) True G343038
TU388219 lncRNA upstream 102082 31878276 ~ 31878513 (+) True G343030
TU388350 lncRNA downstream 10347 32026217 ~ 32026526 (+) True G343153
TU388372 lncRNA downstream 19253 32035123 ~ 32035333 (+) True G343175
TU388440 lncRNA downstream 165414 32181284 ~ 32182676 (+) True G343242
TU388613 lncRNA downstream 188293 32204163 ~ 32204376 (+) True G343394
TU388615 lncRNA downstream 189554 32205424 ~ 32206262 (+) True G343396
LOC118964494 mRNA upstream 172212 31803746 ~ 31808383 (+) True LOC118964494
XM_036976103.1 mRNA upstream 230992 31632668 ~ 31749603 (+) False LOC110521078
XR_002473332.2 mRNA downstream 12170 32028040 ~ 32052239 (+) False tdrd6
XM_021600940.2 mRNA downstream 12170 32028040 ~ 32052842 (+) False tdrd6
XM_021600939.2 mRNA downstream 12171 32028041 ~ 32052842 (+) True tdrd6
LOC110521080 mRNA downstream 56891 32072761 ~ 32082328 (+) True LOC110521080
XR_005051571.1 mRNA downstream 76290 32092160 ~ 32092446 (+) True LOC118964510
TU387844 other upstream 194389 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 529119 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 561339 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 597846 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2643656 29335369 ~ 29336939 (+) True G339928
TU389208 other downstream 679116 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1456182 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1460823 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 1536257 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 1569108 33584978 ~ 33586311 (+) True LOC110522521

Expression Profile