RNA id: XR_002473332.2


Basic Information

Item Value
RNA id XR_002473332.2
length 7435
RNA type mRNA
GC content 0.46
exon number 17
gene id tdrd6
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32028040 ~ 32052842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCATCCGGTCACTCACTCCACTTACTGCAAAAGAAGCTAGCTAGTTGCATACAACAGCGGCATCTTCAAAGCATCGTATTACTTTCCCTGCCTGCAAATTTCCAACAGTTTCAAATGTAACTGTAGCCTATTGATAAGCAGATCGCATCAAATATTTGGTATAACTTGGACAATAATACTAGCTTCCGAACGTTGATGACGTGAGTAACGTTATTATTCATTTTGAGAACGAGAAGTCTCCCGCCATGGCGCGACGCCGCTAACAAGTTAATTGAGGGAAGTTTTGAAAGTGCTTGTTCTGCCCTTTTTGAAGAAACGTCGTTGATCAGCGCTAGAAGGACAACTATTTGCAAAGCAAGGAGCCCTGTACAGCACAACAAGGATGACGAAGTGACTCGCCGGGttgggACTCATTGGACCTTGACATTTATGATTTGTTGGATGGACATTGATAGTTGATGGAAGACGGAATACTTTGACAACGTCAAAATGTGTTCAATCCCTGGGCTCCCAACACCAGGTTCAAAAGTTTCAGTTCTCATAACAAGGGTGAACTGCAATCCCCAATGTGATATTGTGGAGCTATGGGGCAATTTTGATCAAGAGCGAAAAATTGCCTATCAACACCTGCGAAAAGACATTCAGTTTCCCAGAGAAACCTTTCGTGAGTTGGAGGGAAATCCTGGAGATGTGTGCCTGGTTCAGATATATGAAACTTGGTATAGGGTACGCATAGTCTCAAGAAATGGCTCAAGTTACAATGTGTTCCTAATTGACGAAGGGCGAATGCTTGGTGTCACCACTAGCATGTTGGCTTGGGGTCAGAAAGAGTTTTTCCACCTACCCCCTGAGGTAGAATTCTGTGTTCTCTCCAATGTGTTGCCCGTGTCACCTGAGAACAGGTGGTCTCCAGTGGCCTTAGAATTTCTGAAATCCCTCTGCGGAAAGACGGTTGATGCATGTGTCCAGGACATCTTGGTGCCCCATAGAACCTTCCTCCTGGATGTGCCCTGCGTATCTAGACAGATGCACGAAATGGGGTTTGCTAAGAAGCTGAGCACCGATAAGTTCAAGCTCTACGTTTCAAAGTCATTGCAGAGTGGGGCTTCAAACTCTACAGAATATCCACAGAAGTCCTCTGTGAGAAATGACCCACTAGAGACCCGTGAGCAAATTGAGAAGCAGCAGCACTACATGTATCCAGAGCTGCAAACGGAAACCGTAGAGACGGTCATTGTCACGGAGGTAACCAACCCACTGCGCGTCTTCTGTCAGTTGAAGGTGTTTTCTCAAGAGTTGAAGAAACTAACGGAGCAGATTACACAACACTATGAAGGACGAGTGGAAACGGGCATCACCAGACCCGAAACATTGGGTTCCCCATGTGCCTCAAGAGCAAGTGACGGAAGATGGTATCGGTCTATGTTACAACATGTCTTTCCAGCCAATAATGTGGTTGAAGTGCTCCATGTCGACTATGGGAAGAAACAGTTTGTCCAAGTGGAGAACATCAGACCACTGGCCACAGAGTTCTTCAGAATGCCTGTTGTCACATACGTCTGCTCCCTCCACGGCGTCATCGACAAAGGCGTTGGATGGACGGCTGCCCAGATTGAATATCTGAAATCCCTACTTCTGAACAGGACTGTGATCGCCAAGTTCGAGTACCAGAGTCTGTCAGAGGGAGTCCACTACGTAACACTCTATGGGAATGAAAACACAAACATCAACAAACTGTTTGGCACAAAGGAGAGATGTTTGCTGGACTCTGAGAAGGTGCATGGAGATTATGCTGTTCGCAACAACTGTGCAAGTCCTCCACATCCAGATGGAATCAAATTTCAGGAAACTGCACCACCAAACTCTGGTGATCCCATGGAAATTAAGGCTAAATATCATGCCGAAGATCTCCCTCTGAATTCTTCACATGTGGCAGTTGTACAACATGTGGAGAACCCTTCAGAATTCTGGATTCATACACAGATGTATGCAGATGCATTTAATCAAATGATGAATGATCTTGCTGATTTGTACAGCAACCCAGTCAGTGCAGGAGTTGTCGAATGTCCAAAAGTTGGCCTTTATTGTGCTGCCAGATCACAAGATAACTCTTTTTACAGGGCGACTGTGTCTGAAGTCACTGGGAACAAGGCCAGGGTCTTCTTTTTTGACTACGGAAACACAGAGATGATTGACTGGTTCAATCTAGGAGTCCTTCCTGACAAGTTTAAAGAGTTGCCAGCACTTGCACTAAAGTGTAGGCTGGCCGGTATTAGACCAAAAGAGGAGAAATGGAGCCGAAATGCTACAGACTTCTTCACAAAATCAATCGCAGACAAGATCCTGGATGTACACGTAACTGCAAAGTCTCATGGTGCTTACATTGTTCAACTGATGGATTCCTCTGCACATGGAGAGCGAGATGTCAGTAAGCTGCTTTGCAATGCTGGCTATGCAGAGAAGGGCGACACAAGTAAGACCCCTCACAAGGCCTCTTCAAGGCCTATCATCGCCCCCACAACACAGAGCCCACGTGCCATTCCTTATGATGTGTTCAAGGCAAGTGTTGGCCCTCAAGGATTGTCCACCAGTGATTCCACTGTCAAAGAGTCCAGAACTGCCTTCAAGGAATACCTGTTTCCAATAGGAAGTTCAGTTGAAGCCAATGTGTCTTACATTGAGAGTCCAAATGACTTTTGGTGCCAACTAGCACAAAATTCGAATCATCTAAAATGGCTCATGCAAGACATACAGCAGCATTATGCTGACACTGAGTTTGGGCAACCTGTGGAACCTGCCTGTGTTGCCCGCCACCCAGACAACGGAATGTGGTACAGAGCCCTGGTCATTCAGAAGCATGCAACACTGCACGTTGATGTGCTGTTCATAGACTATGGTCAGACAAAAACAGTCTCCCTGCAAGACTTACGCCGCATAGATCCCAACTTCATGCAACTTAAAGGTCAAGCCTTTCGTTGCAGCTTGTACAACCTTATCCTCCCTACTTCTCACACCACTGAATGGCCTGAAGATGCCATTAGACAGTTCCACGACTTTGTGGACACCGCAGCATCCGACCACAGGGTCTTGAAGTGCACCATATATGCTGTCATGTACAATGCCCAGAAAGTGGTATTCAATGTGGTGGATCTGGAAACACCCTTTCAGAGTGTCTGCAACTTGATGGTTCAGAAAGGACTGGCAAACCGTGCACCTGCCAAAAAAGTCCCTTCCTCCCCTTTCCGGTTGGACACCTACTACTACTCCACTCACAACATCAAAACGGGGAGTGAAGAAGAGGTCAGTGTGACAAGTGTGAAAAATGTCAATCACTTCTACTGCCAGTTGAAAAGGAATGCAGATACAGTTAAAGGACTTGCAGAGACCATCAACACGCTTTGTCGCCAGTTGGAGATCACCAACTGTCCCCAAACTTTTGGAACTGTGTGCTTTGCGAAATACACGGACGGAGAGTGGTACAGAGGGCAGATCAAGTCTAGAAATCCAACAATCCTGGTGCACTTTGTGGATTATGGCGACACATTGGAAGTAATAAAATCAGATCTGCTTCCCATTCCCATTGAGGCCAGTGAGATCATGTCTGTGCCTGTACAAGCTGTCCAGTGTGGGCTTTCTGATATCCCCGGAGAGGTTACAAGTGAGGTGAACGGCTGGTTTGAGACCAGTATGACTGACCGGAACTTCAGGGCTCTTGTGGTGGCAAAAGACCCTGGGGGCAAGTTGCTGGTTGAGCTCTATGACAGGAAAATGCAAGTGAATGCAAAGATAAAGGAGAAGTTCAACCTTGAGATGCACAGAGAGGAGCAAGTGGTACACCGAAGCAGGAGACCACATGATGGAACCAGCAGCCACACATCAGCTCTTGAGGCCAAACCTCTGTCTACAACTAAAGAGGTGTTACAAAAAACCGACGAGGACACCCAAAAGTTTGAGAAACTCCCTCGAGCACCCTACACAACATATCAAAAACGGGTACCTTTGAGGAGACCTAATGAGCGAGTTTGTTCAGAGGCCAGGAAACAACCAGAAAAACCAATTCCTCAGGTGGAAACTAAAGGCCCACAAGCGCCAAAGCCATCCCTCAGTGAACCACAAAAGGAGATTGAAGTTCCCAAAGCAAAGGTGAAAGATCTTCCAAAACTCTCAGACCTGCCCTCAAAATCCATAAATCCAGGCATGGTAGCCGATGTCTTTGTCTCACATTGCAATAGTCCACAGAGTTTCTTTGTACAGTTGATCAAGGAGGAAGATGACATTTATTCCATTGTGGAGAAACTCAATGTTGAACAGTCAACTGCTGCAACCATTCACACTAAGGACTTGAGTCAAGGAGACTTGGTCAATGCAGAGTTTCCAGATGATTCGTCATGGTACCGTGCAGTTGTAAGTGAAATACTGGGAAACGAAACAGCTCTTGTTGAGTTCATAGACTTTGGAAATACAGCAACAGTTTCAGTCTCCAAGATATGTCAACTCGACAAACACTTCCTTGAAATTCCCAGGTTCAGTATTCACTGCTTCCTAAGTGGAGTGACAACAGTCGGAAACCAAGCAGAACTGAATCCGGAAGTTGTGTCCAACTTCAAAGAGAAAGTTGGTTTAAACGGTAACAAACGGTTAGGGTGCATGTTCATGAAACAGTCTGGATCTTTTTGGGAGGTTGGCCTAGTGCACGGCAGCAAAGCAATCACATGCAACATATCTCCCTGCAGCGCAACAGCCTCGTCTGATGTGATACATGAGACATCAGAAGGCTCCAACCAAGAGGCAGAAGAGCCCCAACAAAGCCTTTCTGCTAGAATTGTGCCACCAGAGATGAGCACTTTGGTCGACGTTAAGACTGCTCGTTATAGTAAGCCTGACATTTCAGAGGGACAGACCGTAGAAGTCTATGCCTCTACTATAAATGGACCTCAGTCCTTTTGGTGTCAATCTGCTGAATCAGACAAACTTGATAAGATCACTGAAGTTGTTGCAGACGCTGGGAATGCTGTGGCATCAACGTTAATTGACATGGAAACCCTGTGCACTGGAAGCCCTTGCATTGCTCTATTTGTGGACGATGAACAGTGGTACCGTGCAGAAGTCCTAAGGAAAGATGGAGATGCCCTATCCATTCTCTTTGTGGACTATGGAAATGAGTCTACAGTCAATCTGAAAGCTGTGAGGCCAATGCCAACTGTGCTCATTGACACTCCCCCACAGGCGTTCCAGTGTCAGCTTGAAGGGTTTGATTATTCACAAGGATCCTGGCATGACACTGCTGCTGACCAGTTATCAGAACTCATAAAAGACAAACTTCTACACCTGACAGTTATGAGAGTATCCAGTCAAAAGCGGGGTGGGATCACATGTTTCCTCAAGGTGAAATGCGAGGAAGAAATGATAAATGACACTATGAAGCTGTACTGGAAGAGCTCTATTGACAAAGTAACGTCTGAAGACGAAGACAAGTCCGATCCTACAGGAGTTGCAATGTCAGGTGACACGCCTTCACTGGTAGGTGAATTTAAGTTGGTTGAGGAAGCGGCAGCAGTGCCCAACTCAAGTCCCGAAGAGCCATATAAAAAAGTCAGAGAGCATGACACAGACTATGCTTTGGCCCATAGTGAAACTCATGAGTTATTGGATGAGGACAAATGCACAGACATTTCTGATGAGCAACAGGACAGCTCAGTACTCACCCAAGCAACAGATGAAGGTCATGCAGAGGATGTGGATCTGATAAGTTTCCAAGTAGATGCAGACTGTTTTGATCACCTTGGTAACACTGAGTCAATTGACGATGACAAAGAGGAAGAAAAACAGTCTTACACAAATGAGATCCAAGAATCCATGACCGCCATACAGGTTCTGAGTGCAAAGACACCCAACGAAGGGATAGAGACTAAGTCCATTCCCATAATCATCATCTGTGAGGAACCAAGTGACGCAGGACTCGAATGTGTCTCAGAGAGTGGAGTCTCATGTGAGGCTCAAGTGGCAACCTCCCAAGGGAACAAAGACATCTTGGTTTCAAGGACTAAAAAGGACACATTGGAAGTAGACAAAGACGAAAGTGGGAGTGTATCAGTACTGGAAAAAGCCTTCAGTCTGGATGACTCAGAGTCACGTCTGTACTTCGACGAACACTTTGACCAGACTTCTCTTTCAATCATCTACCAAGGTCAAGACGACATCTATGAGGAAGTTTTCAAACTCTGTGCTGAGCCTGTCGCCGAGAGTGCAAAGTCAGAACATGCTGTCACAGAGGAGTCAGAGACCAAAGATGAGGAACTGGAGACCTTGGCTTTGGAGTTGGAGACCAAAAAAGAGGAATCTGGAATCCGAGATGAGGATGTAAACATCTCTGCTGTTGTAGCTGAGTCTGAGTTTGGTAAACTTCAGAGAGTTGAGCTAACTGTTCCAGTTGGGTCATCATCCTGTGTCGTTTGGTCCTCTGCTAAGAAGAGTTGGTGTAAAGCAAAGATTTTGAAGATCTTTGAGGACTCCATAAAGGTTCTGCTGCTGGATCACGACACTGAAATGATAGTAGACCCACACAATATATTTGAGCCGTTGTCTTCAGAAACAGAAGAGAGCGGTGACTTCGATACAGCATCGTCGAATGCTGGGTCAGAACGTGATCATGAAGACACAGATGACAGTGACAACACCGTTGCAGGAGATGACCTGAGCAAGGCTGCCTCAGAGGTCCAGGATGACTCTACTCTAGCTGATGTTTGTGCACCATTAGATGAATCTAGTGATGTGATTTCAGAACAGCTAGTTGATACTGAACCAGCAACTGATGTAGAAGTTGTATCCCGTGTTCCCACACAGGATAATAAGGATGATGACGTGCTTGAGGAAGACTCATGTCTTAGAGAAGTGACTTCATGTCCCATTGGAGACGGTTTAGTTACATCCACAGATGATGGTGCTGAGATTAAGAAAGCAACCTGTGCAGATGGTATATCAAGTGCTACCCCGCAGGAAAGGGACGACCTTCTAGGGGAATCAAAGTCTAGTCCTGATGAAGACTGTTTAGTGTCCACAGAACAGAGAACTGATGCTCAAGAGGCAATTGTTGTGGAGGTTACATCCAGTGCTCCCACACAGGACAAGGATGATCTGCTCTGTCATGAAGAAGTCTGTTCAGATTGTGCAGAACAGTTTGCTGAGATTGAAGAGGTGACCGATGTGGAAGTAGTATCCAGTGCTGCTACACAGGACAAGGTAACAGAACTGCTGAGTAACACTGGAGGGAGGGGTGCTTCTTCACAGTGAaatgatgtgcAGCTTGAGCAAGAGATGTCTTTTCCTGGCGAAGACTCTGCAGAAGTTGTGATGTCACAGGTGACTCATCTCTCCCTGAGAGTGGAGGAGAACTCCGATGATGACGTCATCTTTGTGTCAGAGATTCGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388350 lncRNA upstream 1514 32026217 ~ 32026526 (+) True G343153
TU388261 lncRNA upstream 105946 31921553 ~ 31922094 (+) True G343068
TU388241 lncRNA upstream 126995 31900581 ~ 31901045 (+) True G343051
TU388239 lncRNA upstream 129823 31897935 ~ 31898217 (+) True G343050
TU388227 lncRNA upstream 135462 31892281 ~ 31892578 (+) True G343038
TU388440 lncRNA downstream 129045 32181284 ~ 32182676 (+) True G343242
TU388613 lncRNA downstream 151924 32204163 ~ 32204376 (+) True G343394
TU388615 lncRNA downstream 153185 32205424 ~ 32206262 (+) True G343396
TU388624 lncRNA downstream 162902 32215141 ~ 32215402 (+) True G343404
TU388643 lncRNA downstream 176388 32228627 ~ 32228998 (+) True G343423
XM_021600937.2 mRNA upstream 12170 31980595 ~ 32015870 (+) True LOC110522501
LOC118964494 mRNA upstream 219657 31803746 ~ 31808383 (+) True LOC118964494
XM_036976104.1 mRNA upstream 278437 31632668 ~ 31749603 (+) False LOC110521078
LOC110521080 mRNA downstream 20522 32072761 ~ 32082328 (+) True LOC110521080
XR_005051571.1 mRNA downstream 39921 32092160 ~ 32092446 (+) True LOC118964510
NM_001124397.1 mRNA downstream 69021 32121260 ~ 32123842 (+) True antiprot1
XM_036976120.1 mRNA downstream 482342 32534581 ~ 32541487 (+) False LOC110522505
XM_036976121.1 mRNA downstream 482342 32534581 ~ 32541487 (+) True LOC110522505
TU387844 other upstream 241834 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 576564 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 608784 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 645291 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2691101 29335369 ~ 29336939 (+) True G339928
TU389208 other downstream 642747 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1419813 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1424454 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 1499888 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 1532739 33584978 ~ 33586311 (+) True LOC110522521

Expression Profile