RNA id: XR_005051571.1


Basic Information

Item Value
RNA id XR_005051571.1
length 287
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC118964510
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 32092160 ~ 32092446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTGTAACCTTGTGATACAGCCTCTTGCAAGGACAATTGCTTGTGGCGAAACATGGTTACATAAAGCAAAACAAGGAAGCTAAGGCGGGACTTCTGGAGGTTGAGGAGTTCTACGTGCGATGTTCCTTGGACAGATTGTCTTCAGAGAGCCCTGCTTTCCACGGCGGTGACGGACCATCATGTACCCTCACCTTTCTTGAAGCAGGAAGAAAAAGCCTTGTGTGGTAACCAGCTATTGTTTGGAAGGGGAAGGTTTTCCTGTCGAACACTTGATTTGTCACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388372 lncRNA upstream 56827 32035123 ~ 32035333 (+) True G343175
TU388350 lncRNA upstream 65634 32026217 ~ 32026526 (+) True G343153
TU388261 lncRNA upstream 170066 31921553 ~ 31922094 (+) True G343068
TU388241 lncRNA upstream 191115 31900581 ~ 31901045 (+) True G343051
TU388239 lncRNA upstream 193943 31897935 ~ 31898217 (+) True G343050
TU388440 lncRNA downstream 88838 32181284 ~ 32182676 (+) True G343242
TU388613 lncRNA downstream 111717 32204163 ~ 32204376 (+) True G343394
TU388615 lncRNA downstream 112978 32205424 ~ 32206262 (+) True G343396
TU388624 lncRNA downstream 122695 32215141 ~ 32215402 (+) True G343404
TU388643 lncRNA downstream 136181 32228627 ~ 32228998 (+) True G343423
LOC110521080 mRNA upstream 9832 32072761 ~ 32082328 (+) True LOC110521080
XM_021600940.2 mRNA upstream 39318 32028040 ~ 32052842 (+) False tdrd6
XM_021600939.2 mRNA upstream 39318 32028041 ~ 32052842 (+) True tdrd6
XR_002473332.2 mRNA upstream 39921 32028040 ~ 32052239 (+) False tdrd6
XM_021600937.2 mRNA upstream 76290 31980595 ~ 32015870 (+) True LOC110522501
NM_001124397.1 mRNA downstream 28814 32121260 ~ 32123842 (+) True antiprot1
XM_036976120.1 mRNA downstream 442135 32534581 ~ 32541487 (+) False LOC110522505
XM_036976121.1 mRNA downstream 442135 32534581 ~ 32541487 (+) True LOC110522505
XR_002473072.2 mRNA downstream 573842 32666288 ~ 32699603 (+) True LOC110520986
XM_021598386.2 mRNA downstream 751488 32843934 ~ 32850818 (+) False rnh1
TU387844 other upstream 305954 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 640684 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 672904 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 709411 31381826 ~ 31382749 (+) True G342538
TU384729 other upstream 2755221 29335369 ~ 29336939 (+) True G339928
TU389208 other downstream 602540 32694986 ~ 32704371 (+) True G343958
TU389960 other downstream 1379606 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 1384247 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 1459681 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 1492532 33584978 ~ 33586311 (+) True LOC110522521

Expression Profile