RNA id: XM_021600955.2


Basic Information

Item Value
RNA id XM_021600955.2
length 3674
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110522512
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33389872 ~ 33402155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGTAAAGGTATATAGTCAGAGACCCCCGGGAAATCCTATAGGTCCCTTCGTTGATCTAAAATACTTGGAGAATCTCTTGAAGAAAAACTGAACTTCCTTCaggaaaaataaatgtattctaTTAAATAGGTTTACGCTACCTTCTCTGCCAAATGATATTTACATCGGAACTTCCAACACGAGCTACTGAATGTATCCTAGGCATCTGTCATTATCAACTTGAATTtaatccaaattcatgatatTCTCCTCGCTCAACACTTCTGGACGTTGAGCTTTTTATACACACATTCATAGTTAAATATATCCAGTGTTCTAGGATACAATTTCTCACAGTAGGACAGTAgactgtctccgtctgtctcgcAGTTTGCCGCATCGTTTCTTCCAAGCAGGTTCCACAATTATCTTTCTCCGCTCATACTACATAACGTTTCAACAGCAGGAAACAGCCCCCCAAACCTGTATCAGACTATTGAAGACGGAGAAAAATGCGGCGATGAGGAAAGCTGAGAAGATAGACTAAAACAGTATTTATTGGGCGGTAGGCTACGTGGTCGTGGGAATATATATCAAGGTGTATTATGCCCTATCCAATCTGCGGTGGACCTAAGAGAGAGCACCAGAGGGGAATGTGAGGGGTGCTGGGAAGCACAGTCACACTGCTGTCTCCCTGCACCTGCTGCATCATGGGTAACGTCGGTGGAAAGGACGGCCATGGACCTACAGGATCTCATTTAGATCTGTTCCAaactcctccctcttccctctctgatTCTGATCTGGCACCAGCCGCGGCTCAGCTGCTGCAGCAGGGGACACCGTCCTCCGGGACCACCCGGGGCATCGTCTGCCAGGGTGGAGCCTCCCCCATTTCCAACTGTAGACACACACTGTCCGTCCCCCCAGAATGGGCTGTGATTACAGTGGAGAGCAGAGTGTCTCCGCAGGGGACTGGGATTGAGATGGAAGGTGGAAGGCAGACAGTGCGGTGCTCTAACAGCCACACCAGCAGCCCTGTGTCCCCAGGCCAGCAGCCCCAGTTTGAGGGTAGCCCTTTGGAGCCTAGCTGGCAGGAGCGGGACAGTGGGATGGAGCCCCATGCAAGGCCAGAGCGAGCTGGGGAGGAGATGGCCCTGGCACTGTTTAGCCTTTTGGAACATCACAGGTCTGCACTGGGGCTCAGTCCAGGCCTGGACGCACCAGCAGGAGCAGCCGaGCTGCTGAGGCGGTtgctggtggagagagaggagctggtcGAGGAGGTGCGCAACTTGAAGGACACACTGAGGactGAGCGAGCTGAGTGGCTCCAGTTCCAGTGTGATCTACAGGTGGCAGTGTCTGTGGCCGACCGGCTGCGCGTGGAAGCGGAAGAGACTCTAGGCACGCTCAGAGAGAGCCATGGGAATGTGGAGGGCCAGCTGGACCAGGCCCAGTGCAGACAGCAGGACACGGACAGGGAGCTGGAGGGCCTGAGGGCTGAACACAGAGAGGCCTGTCACAGATTGTCTGCTCTCACCATGGAGCACCAACAGACTAGGGCTGAGCTGGACACACGGAGACTCACActcagggagagcgagagggactcactgagggaaagagagaaggactcacacagagagatagagggaagagacACGGAGGGAGAAGACACTAGTGAAGACATAAGCACGATGGAGGCACTGGatgggaggaaaagagaggattCAGAAAGAGAAgtggaaggagagaaaagggtgaagagtgagggagaggatgtTGACATGGGAGGGCAGTTTCCCAAGGAGCTTGTTAGAGGAGGGGAGAACTTGCTCAAAGTGAAGGGGGTGGCGGAGGCGTACCTACGGAATTTGGCAGCCGGGGAGAAGAGGTGCGGCTTGAGAGATTCACCAAGGATTGTGGTGATGTCAGAGCGTTCCAGGAGCCTCTCTCGACTTCCCCTGCCCACTGACTCTCTCCCTGCACAGAATGGTAGCTCCCAGAACCCTACCAGTACAACACTGCCTCTCTATAAGAAAGAAGAGCCAGCCAAAGGGAAAAGGATGGACCGCATACTGCAACGACAGGACAGCTGGTCTAGCTTCTATACAAAAAAACAGGAGGAGGACCAGAACGCAGACCCATTGTTCAGACCTCAGGATGGTTTCAGCATGCTGCTGCGATGTCATGGAGGCTCCAGGCGGAACTCACTCTTGCGTTGGTGTCAAAGCCGCACCCAGGGCTATAAGAATATTGAGATCACCAACTTCAGTAGCAGTTGGGAGGATGGTCTGGCTTTCTGTGCCGTGTACCACACCTATCTGCCCACACACATCCCCTACAGTAGTCTCAGCACAGGAGACAAAAGCGAGAACCTGGACCTAGCCTTCCAGACAGGGGAGAGTGTTGGAATCCCAGCCACTTTGACTGTGGAGGAGATGCTGAGACCAGGTGGGCCCGACTGGCAGAGGGTCCTGGGGTACGTTGAAAGCATGTTTCGTCACTTTGAGATGTAAGGTCATTTCCCTTCTGGGTTCCATACCAAGCACTACGTCTAACTGGTCTGCCACCACCAGTCTGGTTATTTTTGTTGCATCATGAACTGGACTCTTGAGTGATATACCACTAGGGGGTTTAGGACTACTGTTGGAACGGAATTCTCCTTCAGCCTCACTCCTTGTGCAGAGGCTCCTGCTGCTGGCCATTTGTTGTAGGTGCACTGTGGATGGAGCTACTATGACCTGGGTCGATCTTGATTTCAGAAAGCGCTGACCATGGGGGTTTTGGGCTGAGAGCTGGGTTTTTTGGTACATACACAGTGATTGCACTAAATGAGGAGCCATTGGAAATGACCACAAGGAGAACCATAAATTAGGAAATTGTGGATATGGGAAGGATGTTACTATTTGCACCAGGAAAAATGAACAATGACTTTAAGTTCTTCACTTAGGGTTCTACTGCTGTTCACTCTGTTGTGCACTTATTTTGATGCCTTTTAATTTTATCAACAATATGAAGTCTGTCACAAGTTTTTAACTGGATGATTTGAATGTTATAGACACGCTCTCCCCATGTATCTGATTTTATACCCTTAGAAAACTCTTACCCGTTGTGATATTAATGTAGCCAGAAGTAGTATTTTAATGTCTGTATACAACCCAACTCAAAGCAGAAAAAAGGTCTGGACAACTTGAATGAGTTCATTCAATGGCATTGTGTGCATCACAACTGCAATCAACCAAGAGTGACTGCCTTTGAAAAAATGTGTGTACTGTGCTGTCTAACTAGTAATATTTTTAATGTACGTTTTGTTTGGAAAAACTTTTTTAAAATTTGAATTTAATTTTAAATGTAGTATGCAAACAGAAGTGCCATATGGTGGACTATCCAACAGAGGGACTTGTCTCCTGTTATGGAGTATGGGAATGAACTGTCATGAGGTTTTGTCTGATAATAGGAGCAACAATGAGGCCATATAAGTACTGGATCCTACAATGTTTGCTTGTCTCTGTGATTGAGGGAGAAGGTGAGAAATAAGAGTGATGTATTGTATGTGTCTCAAGTATAAATTGAGACACAGAGGCCCACCCTAAACAGTTTTACTGTGATAATGGTACTGTACGAGAATGATAAATGACAAACAGTTGCCAAAGCATTACTGCCATAATAAAGGTTGTTTTaatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389936 lncRNA upstream 3761 33385907 ~ 33386112 (+) True G344572
TU389935 lncRNA upstream 4651 33384905 ~ 33385222 (+) True G344571
TU389934 lncRNA upstream 5061 33384587 ~ 33384812 (+) True G344570
TU389853 lncRNA upstream 122556 33267077 ~ 33267317 (+) True G344494
TU389850 lncRNA upstream 126061 33263564 ~ 33263812 (+) True G344491
TU389942 lncRNA downstream 6338 33408492 ~ 33408895 (+) True G344578
TU389946 lncRNA downstream 12253 33414407 ~ 33414607 (+) True G344582
TU389947 lncRNA downstream 13441 33415595 ~ 33415963 (+) True G344583
TU389949 lncRNA downstream 16537 33418691 ~ 33418910 (+) True G344585
TU389951 lncRNA downstream 18990 33421144 ~ 33421376 (+) True G344587
XM_021600953.2 mRNA upstream 8903 33358956 ~ 33380970 (+) False LOC110522510
XM_021600952.2 mRNA upstream 8906 33360028 ~ 33380967 (+) True LOC110522510
XM_021600950.2 mRNA upstream 244704 33140884 ~ 33145169 (+) True LOC110522508
XM_021600944.2 mRNA upstream 252363 33119916 ~ 33137510 (+) True LOC110522507
XM_036976139.1 mRNA upstream 252419 33119916 ~ 33137454 (+) False LOC110522507
XM_021600957.2 mRNA downstream 2255 33404409 ~ 33405969 (+) True LOC110522513
XM_021600959.2 mRNA downstream 6959 33409113 ~ 33411055 (+) True LOC110522514
LOC110521085 mRNA downstream 67375 33469529 ~ 33475771 (+) False LOC110521085
XR_002473336.2 mRNA downstream 182791 33584945 ~ 33586386 (+) False LOC110522521
XM_021600970.2 mRNA downstream 231036 33633190 ~ 33636494 (+) True LOC110522523
TU389208 other upstream 685502 32694986 ~ 32704371 (+) True G343958
TU387844 other upstream 1603667 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 1938397 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 1970617 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 2007124 31381826 ~ 31382749 (+) True G342538
TU389960 other downstream 69898 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 74539 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 149973 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 182824 33584978 ~ 33586311 (+) True LOC110522521
TU391145 other downstream 988819 34390973 ~ 34392263 (+) True LOC110522536

Expression Profile