RNA id: XM_021600959.2


Basic Information

Item Value
RNA id XM_021600959.2
length 1823
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110522514
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33409113 ~ 33411055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccctagcACCCTGGCTGTTGGTTTCCACTAGTTAAAATATCTTAATGGACTATACCgtaaaaataaataactaaaattagctttttggtcttaatttaaggttaggcataaggtggTTAAAGTTTAACTAGTGACGACCCTGAGTTATCGGTTGAGTCAAGTTTATTTCCCTGCGCTTTACGACACAACAGACGTCATTACTTACGCCCGAACCGGAAGTAAACAACCCGGGGTTAGTTATAAATACCTTTGCCGAAGTAGAACAACATATTTTAAGATCTGTTTTCTACGGATTTCTCACGTCACTCTTTGTGACAGTGAAACTTTGAATTCTATCAATGCATTGAAAGCACCTTATAATAACATTTCCGCTTTTGATTAGATCACCTTTCACACAATCGAGGGGTAATTTGCTAGAACAAAATGACGTCTCAAATCAGTCTAGCTAGCTAGTTCGCCAGCTATCAGTGCTTGATACCCGTCGTGCACAGTGCATACATTGTCAAGCAGTATCTCATTTCTGCATGAGTATGAATCAGAAGCTGTTAGCATTAGCAAAAGCTTGCAAAGTTCAGAGCCCCGTACAAGGGCTGGTGAGATGCAGCCCATAACATCACCTGGCAGTGGAAGCACTTTGAAGTCCGCCAGTTGGGAGTCAACAGCTGATAAAGACGCACAGGAGTTGACAAAACATCAGATGCCTGCTGTCCCTCAGGCTACAGGGACTTTACAGTGTGGGGATGACTGTCTGCTGGACTGCATTCTGGGTCGAAGGCTTGGTTCAAGGCAACTTGGTTTTGCAAACCGGACTTTGCTGAAGGTGTTGCTTTGGCTGGTTCTGCTTGGGCTGTTCGCTGAGCTGGCCTTCGGGTTGCCTTTCTTCCTAATCTCCCTCTTCTACTGGCTGTACCAGGGGCTGCGGAGCCCAGCTAAACGTCAACCTGGAGAACTGAGCGCTTACTCAGTATTTAACCCTGACTGTCAGCCTCTCATGGGCACCCTCACAGCAGAGCAGTTGGACTGTGAAATGGGAATACTTCAGCTAACCATGTAAAGGAATAGCTACAGATAATGTGATTTAAACCCCCCGAATTGGTATCCATTATACTGGGAGTTACAGGTTGGTACTGCACTGAATTTTCAACCAACCTTTGATGCTGCCTCCGGCCTCGATTCGTGGAAACGGGAGTCTCATAAAATGACCTTGTCTAGTTGCAGGGTGTCCGTTTGAATttctaaaatacttttttgctccatgaagtaatccaacaatgtgtacgccgccatcttgtctatttcaagtTCTCTCATTGACCAAGACCGGTGTCTGTCATGACATGCAGCACTTTGGGGTGGACAAACCCACCTGTCTCGATCAATGAGAGAAGacttgaaatagacaagatggcAACATACACATAGTTGGATTACTTCATggagcaaaaaaaaaatgtattttaataacGGTGCATTTTCTTAATTCAAAGGGACCCCCTGCAACTGgacaaggacattgagacttttcCACGAATCGAGGACGAAGATAGTATCGCCAAGCTAAATTCTGTGTTACACCAAACAGTACCTAACCTGGAACTCCCAGTATAATGGATACTACATTTTTTGGGTTAAATCACATTTTCTGGAGTTACAATATGTAGCTAGTTAAGGAACTTTTTGAAATGTGAACGAGTTGTGATTTTTCTGTTAATTATCTTATGATGCTTAGATGCCCCTCGACTCTTTCAATGAACGAAACACTAGTATTGGTTGTGATGTAAAACTGCTTGTTAATTCCATTAAAATTACTACATCTCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389942 lncRNA upstream 218 33408492 ~ 33408895 (+) True G344578
TU389936 lncRNA upstream 23001 33385907 ~ 33386112 (+) True G344572
TU389935 lncRNA upstream 23891 33384905 ~ 33385222 (+) True G344571
TU389934 lncRNA upstream 24301 33384587 ~ 33384812 (+) True G344570
TU389853 lncRNA upstream 141796 33267077 ~ 33267317 (+) True G344494
TU389946 lncRNA downstream 3352 33414407 ~ 33414607 (+) True G344582
TU389947 lncRNA downstream 4540 33415595 ~ 33415963 (+) True G344583
TU389949 lncRNA downstream 7636 33418691 ~ 33418910 (+) True G344585
TU389951 lncRNA downstream 10089 33421144 ~ 33421376 (+) True G344587
TU389952 lncRNA downstream 11248 33422303 ~ 33422613 (+) True G344588
XM_021600957.2 mRNA upstream 3144 33404409 ~ 33405969 (+) True LOC110522513
XM_021600954.2 mRNA upstream 6958 33389872 ~ 33402155 (+) False LOC110522512
XM_021600956.2 mRNA upstream 6958 33391209 ~ 33402155 (+) True LOC110522512
XM_021600955.2 mRNA upstream 6959 33389873 ~ 33402154 (+) False LOC110522512
XM_021600953.2 mRNA upstream 28143 33358956 ~ 33380970 (+) False LOC110522510
LOC110521085 mRNA downstream 58474 33469529 ~ 33475771 (+) False LOC110521085
XR_002473336.2 mRNA downstream 173890 33584945 ~ 33586386 (+) False LOC110522521
XM_021600970.2 mRNA downstream 222135 33633190 ~ 33636494 (+) True LOC110522523
XM_021600971.2 mRNA downstream 234173 33645228 ~ 33647432 (+) True LOC110522524
XM_021600972.2 mRNA downstream 243005 33654060 ~ 33656575 (+) True LOC110522526
TU389208 other upstream 704742 32694986 ~ 32704371 (+) True G343958
TU387844 other upstream 1622907 31785865 ~ 31786206 (+) True G342707
TU387645 other upstream 1957637 31451133 ~ 31451476 (+) True G342571
TU387623 other upstream 1989857 31417955 ~ 31419256 (+) False LOC110522493
TU387608 other upstream 2026364 31381826 ~ 31382749 (+) True G342538
TU389960 other downstream 60997 33472052 ~ 33486197 (+) False LOC110521085
TU389956 other downstream 65638 33476693 ~ 33489784 (+) True LOC110521085
TU390025 other downstream 141072 33552127 ~ 33554003 (+) False G344647
TU390035 other downstream 173923 33584978 ~ 33586311 (+) True LOC110522521
TU391145 other downstream 979918 34390973 ~ 34392263 (+) True LOC110522536

Expression Profile