RNA id: XM_021600970.2


Basic Information

Item Value
RNA id XM_021600970.2
length 2729
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC110522523
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33633190 ~ 33636494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAAGGCATGATGACAGTTGTGACACACCTCGTCACAAGTCTGGTCGAAATCTAGTGCATGGAAATACATGGATGGCAAACCCTAACACTAACAAGAGGCCTCTAAATGGACAAACATGTCATCAACAACTTCCAACCGAACACATCATCTAACTCTGATAGCTGCTCTTGGGGTTTTGTGTTCAGTGGTACTATTTTTTGTTTACTTTCAACCAACATCTACTGTATGTCCATCTCGATTAGATGATTTGCCATTTTTGGCAAAGGGAGATGTTTCCTCACCTACCAAAAAGCCTGTGGAAAAGCCGTTTGTGTTGCTCTGGTTCTGGCCACTGGGTGTGAGATGGAATTTTGAAATCTGCAAAACCCACTTCAACATCGATAGCTGTGTTCTGACAGATGACAGATCCCTTTATGACAAAGCAGAGGGAGTGGTTGTTTTTCACAAAGGCATCAGCTGGGACCTGAAGAACCTGCCTCAGTCTCCTCGTCCACATTTTCAGAAATGGATctggtttcatgtggaatcacCAACAAATACCGCCAGAATACCAGGTCTGGAAAATCTATTTAACCTCACTTTGAGCTATAGACGAGATGCTGACATCACAGTGCGAAATGAATTGACAACCGTGAAGAATGAAAAGGACAGTGAGTTTTTGCTGCCCAGGAAGGATAAATTGGTTTGTTGGATTGTGAGCAACAACAATCCTTCAACTGGGACAGGAACCAGAGCAAAGTATTATCAAGAGTTGGTCAAACACATCAAGATACATGTTTATGGTTCTGCTTTTACAGGGAGTCGTTTGAAGTATGAGGAGTATTACTCAACCCTTGCTAGCTGTAAATTCTACCTTTCATTTGAGAATTCAATCCACAGAGACTACATCACAGAAAAGGTGAACGGACCACTTGTAGCAGGAACCATACCAGTAGTCATGGGCCCACCCAGAGAGAACTATGAACAGTTTATCCCAGCTGGTTCTTTCATTCATGTAAATGACTTTACTAATGCAAAGGCGCTGGCTGACTTCCTCCTCCAATTGGACAAGAATGATGAGATGTATATAAGTTACTTCACTTGGAGGAGGTACCTTAATGCCAAACCCCACCTCCTGACAATACAGGAAGAGTTCATTCAACCTGTTTGTTTAGCCTGTGAATACATGGCAAGAGACAAAGGATATTACAATGCTGTCCACAACCTTTATGAATGGTACTTTGGATGAGGGTTTAGCCATCATTTTGTAAGCACAGAAAATAACATTTTACCTTAGCTACATAAACGGAATACAATTTTAAAAGTGTCTTTGGATTTGGAGATATTTTGATTCAAAATCTTTATCAATTTAAAGGATGTGCATTCAAGGTTTTGGGGaagattaaaataaataaataattaaacgcTTTGGAAGCAACATACACTGTAAACCCTAATGTGCTGTCATTACTCAAAACTTTTAAGGAACCCATTGCACTTAAAtaaaaccttttactgcagtgggctaaatcagctGGTCAGAGTTATTCTTCGTGGTCCTTAACAAATCTACTGTGAAACCAAAGTATACACCTCCCACACATGGTTATAGGCTTAAAAAAATTAGAAACctttaccatgtcagatatagagttcaaatgtattacattttcacTTTGAATGTCAATATTACattttatatacatcacagaagaccgAACTATAACAAAACGGTTTgatatagaaacaccagattttagtctgttaaaaaaaaaatatatatttattatttatgaaaaattataacattccacccatgaggtcaACGACGGCGCTTTTGGTAATTGATTGCAGGAAAGGGTTGCTATGTCTGGATACAATTACTTAAAGTGATTTTGTAGTCATTACTCACACTGACCCTatagggcaggggtgtcaaactcattccagggAAGTCCACGTTTTGGGGTTTTcctttcaatgacgacctagacacccaggtgagaggagttccttactaattagtgaccttaattcatcaatcaagtgcAAGGGTGGAGCGGAAACCCACAGATACTCTGCCCTCCATGGAATTAGTTTGACACGTGTTGTAGAGGGTCCAGATTTGAGTTGTATAATTTTATTGCCGTTTGTATGACATTTGAATAATGCCTCCAATATAATTTCCCAGTGTGCCTAGTCTTTGAATGAATTGCAGAGTTACTGTACTGGTTGTTGAATTCACTCATTTTTAGTTGTGTGGGTGGCCTTCACTGAGTGAGTTCCTAGGCAAATGTTGTCTTTATAGTTCAACACTTAATGACAAAACATTACATATCCAGTAAGGACTTATTTGAGGCCTCGTGAAATTCCAGTATCTTTACCACATTTTCAAAAAATCCTGGTTGAAGAATTTCCTGGATTCTTCCAACTGGGATTCCTGAAAAACCTGGGAAATTTACCATCATTTTGCAACCCcacctgcaagtcacattatgctggcttgcaaagtgacgTATAactcctattggaatccagacagAGTTAGGATATCTATTAACCATGGAAATTGGAACACCCATTTCCGTAATGAGTGCAAAAAATCTAAGGATTCATTTagaaaaatgcatgttttttatGTGTAGCATAAATGTGTCCATCAATCACTCAACGTACATGCAAAAACACTTGTTTTAGTTTTGAGTTTGTGCTTcataaacattttaataaataaatgacttTTCATT

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390073 lncRNA upstream 3179 33629669 ~ 33630011 (+) True G344692
TU390065 lncRNA upstream 14950 33617941 ~ 33618240 (+) True G344685
TU390059 lncRNA upstream 21367 33611516 ~ 33611823 (+) True G344679
TU390053 lncRNA upstream 32593 33600073 ~ 33600597 (+) True G344673
TU390050 lncRNA upstream 37181 33593278 ~ 33596009 (+) True G344670
TU390123 lncRNA downstream 111646 33748140 ~ 33752828 (+) True G344740
TU390124 lncRNA downstream 117400 33753894 ~ 33754145 (+) True G344741
TU390126 lncRNA downstream 119443 33755937 ~ 33756163 (+) True G344743
TU390133 lncRNA downstream 127539 33764033 ~ 33764286 (+) True G344750
TU390134 lncRNA downstream 141052 33777546 ~ 33777773 (+) True G344751
XR_002473336.2 mRNA upstream 46804 33584945 ~ 33586386 (+) False LOC110522521
LOC110521085 mRNA upstream 157419 33469529 ~ 33475771 (+) False LOC110521085
XM_021600959.2 mRNA upstream 222135 33409113 ~ 33411055 (+) True LOC110522514
XM_021600957.2 mRNA upstream 227221 33404409 ~ 33405969 (+) True LOC110522513
XM_021600956.2 mRNA upstream 231035 33391209 ~ 33402155 (+) True LOC110522512
XM_021600971.2 mRNA downstream 8734 33645228 ~ 33647432 (+) True LOC110522524
XM_021600972.2 mRNA downstream 17566 33654060 ~ 33656575 (+) True LOC110522526
XM_021600973.2 mRNA downstream 32678 33669172 ~ 33673911 (+) True LOC110522527
XM_021600978.2 mRNA downstream 493354 34129848 ~ 34133896 (+) True LOC110522531
XM_021600979.2 mRNA downstream 531756 34168250 ~ 34199052 (+) False LOC110522532
TU390035 other upstream 46879 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 79187 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 143406 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 146993 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 928819 32694986 ~ 32704371 (+) True G343958
TU391145 other downstream 754479 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 900507 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 1183948 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 1437445 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 2196875 35833369 ~ 35833844 (+) True G347151

Expression Profile