RNA id: XM_021600971.2


Basic Information

Item Value
RNA id XM_021600971.2
length 1657
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC110522524
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 33645228 ~ 33647432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCAACCTCTAGTTGTCAGGCAGGTTCTTTTGCATTTCCCATGAAAAGGCATGATGACAGTTGTGCCACACCTCGTCACTAGTCTGGTTGAAATCTAGTGCATGGATTTACATGGATGGCAAACCCTAACACTAACAAGAGGCCTCTAAATGGACAAACATGTCATCAACAACTTCCAACCGAACACATCATCTAACTCTGATAGCTGCTCTTGGGGTTTTGTGTTCAGTGGTACTATTTTTTGTTTACTTTCAACCAACATCTACTGCATGTTCATCTCGATTAGATGATTTGCCATTTTTGGCAAAGGGAGATGTTTCCTCACCTACCAAAAAGCCTGTGGAAAAGCCGTTTGTGTTGCTCTGGTTCTGGCCACTGGGTGTGAGATGGAATTTTGAAATCTGCAAAACCCATTTCAACATCGATAGCTGTGTTCTGACAGATGACAGATCCCTTTATGACAAAGCAGAGGGAGTGGTTGTTTTTCACAGAGACATCAGCTGGGACCTGAAGAACCTGCCTCAGTCTCCTCGTCCACATTTTCAGAAATGGATctggtttcatgtggaatcacCAACAAATACCGCCAGAATACCAGGTCTGGAAAATCTATTTAACCTCACTTTGAGCTATAGACGAGATGCTGACATCACAGTGCGAAATGAATTGACAACCGTGAAGACTGAAAAGGACAGTGAGTTTTTGCTGCCCAAGAAGGATAAATTGGTTTGTTGGATTGTGAGCAACAACAATCCTGCAACTGGGACAGGAACCAGAGCAAAGTACTATCAAGAGTTGGTCAAACACATCAAGATACATGCTTATGGTTCTGCTTTTACAGGGAGTCGTTTGAAGTATGAGGAGTATTACTCAACCCTTGCTAGCTGTAAATTCTACCTTGCATTTGAGAATTCCATCCACAGAGACTACATCACAGAAAAGGTGAACGGACCACTTGTAGCAGGAACCATACCAGTAGTCATGGGCCCACCCAGAGAGAACTATGAACAGTTTATCCCAGCTGGTTCTTTCATTCATGTAAATGACTTTACTAATGCAAAGGCGCTGGCTGAATTCCTCCTCCAATTGGACAAGAATGATGAGATGTATATAAGTTACTTCACTTGGAGGAGGTACCTTAATGCCAAACCCCACCTCCTGACAATGCAGGAAGAGTTCATTCAACCTGTTTGTTTAGCCTGTGAACACATGGCCAGAGACAAAGGATATTACAATGTTGTCCACAACCTTTATGAATGGTACTTTGGATGAGTGTTTAGCCACCATTTTGTAAGCACAGAAAATATAATTTTAGCTTAGCTACATAAACGGAATACAATTTTAAAAGTGTACTCGAATTTGGGGATATTTTGATTCAAAATATGTGTATCATTTCAAAGGATGGGCATTCAAAGTTTTGGGGAAgattctattttattttttattaaacactTTGGAAGCAGAATAAACCCAAATGTGCTGTCATTATTCAAAACCTTTAAGGAACCCATTGCACTTGACCTTTTACTACAGTTGGCTAAATCAGCTGATCAGACAGctattcttggtagtcttaaacaaatctactttaaaaccaaactacagtgccttgcgaaagtattcggcccccttgaactttgcaaccttttgccaca

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390073 lncRNA upstream 15217 33629669 ~ 33630011 (+) True G344692
TU390065 lncRNA upstream 26988 33617941 ~ 33618240 (+) True G344685
TU390059 lncRNA upstream 33405 33611516 ~ 33611823 (+) True G344679
TU390053 lncRNA upstream 44631 33600073 ~ 33600597 (+) True G344673
TU390050 lncRNA upstream 49219 33593278 ~ 33596009 (+) True G344670
TU390123 lncRNA downstream 100708 33748140 ~ 33752828 (+) True G344740
TU390124 lncRNA downstream 106462 33753894 ~ 33754145 (+) True G344741
TU390126 lncRNA downstream 108505 33755937 ~ 33756163 (+) True G344743
TU390133 lncRNA downstream 116601 33764033 ~ 33764286 (+) True G344750
TU390134 lncRNA downstream 130114 33777546 ~ 33777773 (+) True G344751
XM_021600970.2 mRNA upstream 8734 33633190 ~ 33636494 (+) True LOC110522523
XR_002473336.2 mRNA upstream 58842 33584945 ~ 33586386 (+) False LOC110522521
LOC110521085 mRNA upstream 169457 33469529 ~ 33475771 (+) False LOC110521085
XM_021600959.2 mRNA upstream 234173 33409113 ~ 33411055 (+) True LOC110522514
XM_021600957.2 mRNA upstream 239259 33404409 ~ 33405969 (+) True LOC110522513
XM_021600972.2 mRNA downstream 6628 33654060 ~ 33656575 (+) True LOC110522526
XM_021600973.2 mRNA downstream 21740 33669172 ~ 33673911 (+) True LOC110522527
XM_021600978.2 mRNA downstream 482416 34129848 ~ 34133896 (+) True LOC110522531
XM_021600979.2 mRNA downstream 520818 34168250 ~ 34199052 (+) False LOC110522532
XM_021598431.2 mRNA downstream 579021 34226453 ~ 34229272 (+) True LOC110520988
TU390035 other upstream 58917 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 91225 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 155444 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 159031 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 940857 32694986 ~ 32704371 (+) True G343958
TU391145 other downstream 743541 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 889569 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 1173010 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 1426507 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 2185937 35833369 ~ 35833844 (+) True G347151

Expression Profile