RNA id: XM_021600978.2


Basic Information

Item Value
RNA id XM_021600978.2
length 2940
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110522531
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34129848 ~ 34133896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATTGTCCTTTTTTTGGATGCCTGCGTCAGCAAGACCTTTTTAAAATCACCACATGGCATACATGGAATCAGTTGACCATATTTGCAATTTCCATGATGTGTTAAAGAGTTTTTCAGACATTGTATTATCACCGAGGTACCGGATCTAGAATTTATCCCATTTGGCTATAAATAAGTTTCAGTCTTCACAGTCGCAGCTACCTCCGTCTCCCCATGCGCCTGGATGATGACGTGCAGGTCcaggcagaacgatagatttcaACAGCATCACTTCATAAAATATAGTCTTTCTATTGACAAATTAACTATTTAATTGGTACTAGTAAACGGCGACTAAATAATTAGAGTTTTGTCCACTGCCTTCTGAGTGTTTGTTGGCTCGCGGAACATACGGACCATGCATCTGAACCACTCCGCGGACCACGAGACCACTCTCCGTGGCGGGAAAAGGGGTCAGCTCGAGCTCTCCTCCGACGCCATCAATAGTTGGGCATCCTCAAAATCCCAACAGTATCCTGTCAAAATGCAGCTACCCAGCAGTTCCTTCATCCCCACCATCAATGCCATCACGTCCAGTCAGGAGCTGCAGTGGATGATCCAGCCAGCCATTCTAGCCTCCAAGCCTGGCCACTGCCTACCCTCTCACCCCTACCAGCCCCTGGACATCAGCAGTAGCCTGGGGCCTGGGAGCCACACAAGGCTCGGGGTAATACGGACAGTGGGCAACACGCATGGAAGGAGCAGGCGTAGTGATCAGTTGAACCCAGCTGAAGAGGATAGGAGAAGgttgaggagagaaaggaacaagCTGGCTGCTGCCAAGTGTCGCAACCACAGGAAGGAGCTGACTGACCAACTGCAAGGAGAGACTGATGAACTGGAGAGAGAGCAGGCCTGCTTGAAGACCCAGGTTGAGAGGctccaggaggagagagagaagctagaGCGCATGTTAGTGTCGCATGCCGCAGTGTGTCTACTGGGCTGTGACGGCCATCCCCAGGCCCAGCCACTGCCCCCTCCTGCCCCGACCATGTACCCCACAGCCACCtcccccctggccaaacccctGAGCCCCCCTCCCGCGATAAAGCAGGAGCCTCAGGAGGAGATGCTGTTCTCCTTTCACCACCATGAACACTGCGCCATCAAACCCACCTATCGCCATGTAGAAGAGTACTGTCCCAGTGTCGACAGCTTCACCACCCCGTCCATGGTGAGCTGCAGCCCAGCCCGTTTGGTGGATCTATCCTGTCCCATGCGGTCTCACCATCACCCCAGCCTGGGTGGGCAGGATAGGTCATTCCGGGAagaggcccttcccaacaacttGCTCTCCAAGCCTCTCCCTGGTAGTGACATGAGTCTTGAGGATGGACTACTGGGACCACGATTCTCCCCCAACTTGTTGACTCTGTAAGGCAATGATTTACAGTAAAGTGGACAAATATAATGTACAGCGCTGTACTGTACTTTAATCACTATGGCATGTTCAGATGTTCAGCTATTCTTTGAAATACTTGACCAGCAACTGATTTGGTCTGCCTGGtataatggaactaatggaattGTCCCAAAAGTACAAACTCCATgctaaggcctagattcaatcagatcgagTGTTAAACTGTGATAGCAGACACACGAATAACAAATGTTTTTGCTGTCAGAGGTGGAACTGCGTTTGAGCCATCAAATCGGTGAGTAGCTGCTCTTGCAATCATTGTCAAGAAGCCACATCTGTCCCCACTCGCTTTGGAAGTTCAGAGCGAGAAAGTGTAGCCTATATATAAATAATTACGCTCAAATTGAAAAATAATTAAACTATATAAagaggatttctatcagcctatTTGATGTGTAGAttccatctcacattccagtgttctaaCTTGGAACAAGGCTGCATGTGATTTCTGTTAATGTGACTGTGAAGCTAATGGCAATatccgctttaggtataatgcctgGAGctacttgtggatttgacagctctaacagcagttccacctctgacaccaccaaaacaaccgCAATACTGATGTCACTAAAGCGGTTCTGATTGAATAGAGCACTTTCTCAAGCACAGACTAGGCTATAGTATACTGTCAAGTATCTAAAAGTTTGACATGTGTATTTTACTGAGCTCTGGAGAGGATTCTTCCCTTGTAAGAGGAAGATAAAGGTTTAACTAGATATTCTTTGTTAATCAGAAATTAACATCACAATTCCTTTACAAGTTTGGCTCTTGTCAATACTTCAATCATATCCATTTTCAAACTGAAAATCGATTGACTGGTAGTTTGGTTTGTTAGACGCTAGATGGTGCTGCAAGACATTGCCTTGGCACAACTGTAAAGCACTACTGTAAATCACAATGGCAAATATTTATTAACCATTAGTTCTGTTTAgtatttaattatttaattgcTGTGCCATTTATTAAAGCCAATCTGTATGTAGAAGCCATTTTATGATTTTAAGTTGGAATAATGAGTTGTCACGACAATACTGACACATTTTCTACAGTCAAATGTGATATGAACACAATGCAAACATTACTTACCATACATCTGAGGTAGAAGTGTCATAGCAATATTGTCATCCACAATTATTTGCTATAATGTTGACCTTTATATTTATCTCATATTGTGTGTTATTCATTCTTGACGGTTTTCATTAGGTTTCAATGTATTATTCGAGGCAGTACAATATATTAATAGGAAGAGTATTTGTTGTATAGTTTGCTGTGAGAAACATATTTTAAAATATGAATTGCTGGCAGTATGATCATAATATATAAGACCTCTCTAAGTATACAGACTCTGGGGACAAAACgttatctacagttgaagtcggaagtttacatacaccttagccaagacatttaatccaagtaaaaattccctgttttaggtcagttgggatcatttcaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390958 lncRNA upstream 12042 34117482 ~ 34117806 (+) True G345513
TU390952 lncRNA upstream 17544 34111940 ~ 34112304 (+) True G345507
TU390892 lncRNA upstream 61815 34067733 ~ 34068033 (+) True G345450
TU390869 lncRNA upstream 71039 34056444 ~ 34058809 (+) False G345433
TU390868 lncRNA upstream 71039 34058069 ~ 34058809 (+) True G345433
TU390978 lncRNA downstream 34477 34168373 ~ 34200246 (+) False LOC110522532
TU390981 lncRNA downstream 34477 34168373 ~ 34200246 (+) False LOC110522532
TU390982 lncRNA downstream 34477 34168373 ~ 34200246 (+) False LOC110522532
TU390983 lncRNA downstream 34477 34168373 ~ 34200246 (+) False LOC110522532
TU390985 lncRNA downstream 34477 34168373 ~ 34200246 (+) False LOC110522532
XM_021600973.2 mRNA upstream 455937 33669172 ~ 33673911 (+) True LOC110522527
XM_021600972.2 mRNA upstream 473273 33654060 ~ 33656575 (+) True LOC110522526
XM_021600971.2 mRNA upstream 482416 33645228 ~ 33647432 (+) True LOC110522524
XM_021600970.2 mRNA upstream 493354 33633190 ~ 33636494 (+) True LOC110522523
XR_002473336.2 mRNA upstream 543462 33584945 ~ 33586386 (+) False LOC110522521
XM_021600979.2 mRNA downstream 34354 34168250 ~ 34199052 (+) False LOC110522532
XM_021598431.2 mRNA downstream 92557 34226453 ~ 34229272 (+) True LOC110520988
XM_036976143.1 mRNA downstream 184617 34318513 ~ 34338873 (+) True LOC110522534
XM_021600983.2 mRNA downstream 223194 34357090 ~ 34364255 (+) True LOC110522535
XM_021600985.2 mRNA downstream 256973 34390869 ~ 34394175 (+) False LOC110522536
TU390035 other upstream 543537 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 575845 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 640064 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 643651 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 1425477 32694986 ~ 32704371 (+) True G343958
TU391145 other downstream 257077 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 403105 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 686546 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 940043 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1699473 35833369 ~ 35833844 (+) True G347151

Expression Profile