RNA id: XM_036976143.1


Basic Information

Item Value
RNA id XM_036976143.1
length 2908
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110522534
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34318513 ~ 34338873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCTCTTTCCGGGTTCCGTCATCACCTTCTCCCGCTGATCAGTGGAGCCAGTCTATCCTATAAGCGCGCTCACGGCCAACCTGCTAACATTCGCTGACACCCTCACGTTTCAGAGCCGGAGGAAATGGCCACGAGGACCGACGCATCGATATAGTCTTTCTTATTAGATTTCATTCAAAAGCTGTGCGTTGGAGGAATAGATTGCCTTCTGGAACTAATAATCTCTGTACACCGTATTTAGATTACCTTGACAACCGGTCTCAGTGATTGACAGCAGGACCGATACATGCGAGTTGTTGATGCGCTTAAAAAACTTTTATGAACCGAAGGTTCTACTTGGTCTTACCCGTTATGGTGATTTTTCCATTTCGGCTAttgcaatattttttttcttgttGAAAAATACACATCTTCACCTTGCTGCGGGTTTCTTCTTTATTGCCACTGCGGATTACAATTCTCAACTGGATGTAAAAGGCATTAACTTGATACACCACCTTCTCTGCGAACTGACTTATTCcctgtgttttacctttttatctCCAAGACAGGCGCATGTCGATGGCGCAAAGGTACGATGAGCTGTCCCACTATGGTGTTGGGATGGACGGAGTTGGACTCCCGGCGTCCATGTATGGAGACCCCCATGCTCCCCGGACGCTTCCGCAAGTCCACCACTTGAACCATGGTCCGACTGCACATCCAACCCAGCACTATGGATCCCACGCACCCCACAACATCATGCCCAGCATGGGCAGCGTGGTGAACGACGCCTTAAAAAGAGACAAAGATCAAATCTATGGTCACCCGTTGTTCCCTCTGCTCGCCTTGGTGTTTGAGAAGTGTGAGTTGGCGACCTGCACGCCCAGGGAGCCTGGAGTAGCGGGTGGCGATGTCTGCTCCTCAGACTCCTTCAACGAAGACATCGCTGTCTTTGCAAAACAGATACGGGCAGAAAAACCGTTATTTTCATCGAATCAAGAGGTGGACAATTTGATGATCCAAGCTATTCAAGTATTGCGGTTTCATCTTTTAGAATTAGAGAAGGTACATGAGCTCTGCGACAACTTCTGCCATCGGTACATCAGTTGTTTGAAAGGCAAAATGCCCATCGACTTGGTCATAGACGATCGAGATGGCTGCAAATCTGACTTAGATGACCTGACGGGATCCTCCACAAATCTAGCAGATCACAACCCAGCGTCCTGGAGAGACCTGGATGACGCCCACTCCACGCCCTCCGTGGGCACCCCGGGGCCCTCCAGCGGGGGCCACATCTCCCAGAGTGGGGACAACAGCAGCGAACTCGGAGATGGCCTCGACAACAGTTTGGCGTCGCCGGGTACAGGAGACGAGGATGACCTGGACaagaagagacagaagaagagaggtaTCTTCCCCAAAGTGGCCACCAATATAATGCGAGCGTGGCTCTTCCAGCACCTCACGCACCCCTACCCTTCGGAGGAACAGAAGAAGCAGCTAGCACAGGACACAGGCCTCACCATCCTGCAAGTGAACAACTGgtTCATCAACGCCAGGAGGAGAATAGTACAGCCTATGATTGACCAGTCTAACAGATCAGTGGGCCAGGGGACGGCATACAGCCCTGACGGGCAACCAATGGGAGGCTTTGTCCTCGACGGACAGCAACACCTGGGGATTCGGCCTGGCGGACCAATGGGTGGAATGGGAATGAATATGGGGATGGATGGTCAGTGGCACTACATGTAAACCCTGTCCAACCGAGGCAAGcctgaagaagaagatggagaaGCCTCCATGGTTTGCTCAGGGAAAATCCTGCCGCTTGGTTCCAATGAGCGTGTGACTCCGCCCCAGTCACACCTGTACCTGTCATCTGACGACGCCCACCTCACCTCCCCACTGGAGCATGGAGGACCACACCCACATCTGCACAAACGCCGCCCACATTGACCTTTAATAACCCCACGCCTGGAGGAAGACGAGGATCTactaataaacaacaacaaaaacaacaacatttgcaGACAACAATCTTCCAAAACAAAAAAAGACTTCTGTATGAACAACGGAAGCTAAAAGGACCTCAAACAcattttgacacattttttgttttcttttttaaattatttatttatttttctacaATGGTGGACCACAGGGACAAGAACTTTTTAGTCTTTGCCCGAGATATTTTGACACagccggcacacacacacactaacacacattccctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcaaacaaatacacacacttcATCTTATGAACACACCATTTGAAAACAACCACTGTGGAATATCTAAAAGGAGTATGAAGAGTTTTACTAACTGTTGTGGTGTATAGACTTGTGCTTTTACATTTGACTGTTTTCTCCATGTTTGCGCTTTGTGATCATTAGTTTATGGAGTGAGAGTTTATCACTAATCCTGTGTGCTgtggaacagagagaaagagagaaagagagagattgccTCGGAGTCTGCAGCCTGGAGCTTGTCTCAGATACTGCAGACGGCAGCCCCATCCAGCTCCCAACAAAAAAACAAGCCCTCTTTTTATTTGTATTCTGAATGTGGCCCAGTTGCTTTTATTACCCATGCACTGAATGCATTTCATATATTTGTTATTATTCTGTTTTGATTTGGATTGTTCTGTGTTGTCCTGAATTCAGACTAAAGAGCTGATGGATTGACGTCACACTGGTAAGGTGGATCTTGGACCGACTTCCATTTAGATCATGTCACAATAGTTTTATAGCACACAGGAAGAAGGAAAGGGTTTCTGCACTAAAGaccaaaataaaaaacaattttAAAACTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16672 HTH; homeobox protein homothorax

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391104 lncRNA upstream 11987 34301632 ~ 34306526 (+) True G345634
TU391108 lncRNA upstream 13028 34300560 ~ 34305485 (+) False G345634
TU391096 lncRNA upstream 28725 34285276 ~ 34289788 (+) True G345627
TU391095 lncRNA upstream 30967 34282716 ~ 34287546 (+) True G345626
TU391073 lncRNA upstream 61320 34255013 ~ 34257193 (+) True G345610
TU391124 lncRNA downstream 4301 34343174 ~ 34343383 (+) True G345647
TU391125 lncRNA downstream 4562 34343435 ~ 34343650 (+) True G345648
TU391135 lncRNA downstream 26289 34365162 ~ 34365672 (+) True G345658
TU391162 lncRNA downstream 90937 34429810 ~ 34450645 (+) False G345681
TU391158 lncRNA downstream 91005 34429878 ~ 34436198 (+) False G345681
XM_021598431.2 mRNA upstream 89241 34226453 ~ 34229272 (+) True LOC110520988
XM_021600979.2 mRNA upstream 119461 34168250 ~ 34199052 (+) False LOC110522532
XM_021600978.2 mRNA upstream 184617 34129848 ~ 34133896 (+) True LOC110522531
XM_021600973.2 mRNA upstream 644602 33669172 ~ 33673911 (+) True LOC110522527
XM_021600972.2 mRNA upstream 661938 33654060 ~ 33656575 (+) True LOC110522526
XM_021600983.2 mRNA downstream 18217 34357090 ~ 34364255 (+) True LOC110522535
XM_021600985.2 mRNA downstream 51996 34390869 ~ 34394175 (+) False LOC110522536
XM_021600986.2 mRNA downstream 55447 34394320 ~ 34397704 (+) True LOC110522537
XM_021600992.2 mRNA downstream 116319 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 198077 34536950 ~ 34541410 (+) False LOC110522530
TU390035 other upstream 732202 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 764510 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 828729 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 832316 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 1614142 32694986 ~ 32704371 (+) True G343958
TU391145 other downstream 52100 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 198128 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 481569 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 735066 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1494496 35833369 ~ 35833844 (+) True G347151

Expression Profile