RNA id: XM_021600983.2


Basic Information

Item Value
RNA id XM_021600983.2
length 4357
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110522535
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34357090 ~ 34364255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGTCAGTTGAAGGCTTGTTTTTGGAGAAAGTGAACGTTTTagtataacgttagctagatagcaAGCTACATGCTTATTTTGTCAAATAATAACAGTATTTGTTACTTAATAGCTTGTGGGGCGTGATTTAGCCATTTCTAAAGGTTGCCATAAGATGTTGTCCTCCCGTATTTCCAGCTGGGATGTGCCACGGTGGAACTAGAATGATGTTAGTGGACACAATGCTAGCCCGGCAACATGGACCACAGGAGGCCTTTGGTGTTATGGAGAAGATGCCACAGGGCAGGAATTATCAGTGTGTCACATGCTTGAAATGTTTTTCCGCCCCATCCAAGCTACAGAGGCACATCCTTTCACACACAGGACAACGACCATTTGGGTGTCACCTCTGTGAAAAGGCATTTCGGCAACTAGCACACCTGAAACTCCATCTTAACACACATCTTTATCCAAAACGAACTGAACAGAAGAAGATGAATGTAAAGTCTAGCTTGCATCCAAGTGGATATGAAAATACCCCTCCTGTAAAGATAGACAACTCAAAAGCATGTTTGCAGACAGGCTCCTTGGACCCAGTCGGTGCAGAGGACACATTGGAGGTAGACATCAGGCCTACTGGACCTGTCTACATAATTGAGGAaaactctctctgttcccctcgcTGTATCGCTGAACTATATCCCCCACACTCTGAGGTCGAGAGGTTTAAGAAGCAGCACACAGAAGAGGAGCCAATTAGGAACCACGATGACTGGAGTGAACCTGAGAAACAGACACTGGATGAGGATAAATCCTCCAGAGATGAAACAGTGGATAAACATACAAAAATAATTGAGAATTCAAACTCTCATAAATGCCCTGAGTGCTTTAAGTGCTTCAGCGCCCCGTCCAAATTAAAGAGGCACTGCCTGATTCACACAGGCCAGAAACCATTTCAGTGCTACCTATGCCGGCGTGCTTTTAGGCAGTTGGCCCATCTTAAGGTACACTACAGCATTCACTCAGGGGTCGCGAAGTCTAGAAGTCTCAAATCTTTCTCTCAACCCCAGAGGTCAAAAACCTGGCCAAGGAACTATCCATGTAACATTTGTGGCAGGAGATTTAAACAGAAGAGACATTTGATAGTTCACCAGCAAACTCATCAAGGTCCAGATACTGCTGTGCACCCTGATAAGTTAGATAATACGAGTAAGGCCTGCCTTCCAACTCACACTGACCATGCTTCCCAAGTAGATTTCTCAAACTCTGAAAATGCTATAGCGTACAATACAGAGCTGAATGAAAAGAGTCAGATACCTGTTGTTGAAGGTTTAGACATCTTATCTGAAGAATGGCATAACAGTGCAAAGCCTGCGTCACAGGACATTGACCTCACTCGCTCCTCAGACAGAAACAATAAGTCATCTGTGTCTCATCGCTCTGACCGTACAAACACAGGTAAGGTAAGGGAAAATCAGTGCATGCTGTGCCTAAAGAAGTTTGACTATCCCTCCAAACTCTCCCGACATCTATTGGTCCACATGGACATCAAGCCGTTCGGATGCACCGTCTGTAGTAAGTCTTTCAGACAGCTCTGCCACTTACAGAATCACATGAAGGCGCAACACGTAAAAAGCGACAATGTTTTGAAAAGTGTAGAAGATGCTCCCGACCAACCAGGTGTTATTCTATTAAAGGACAAGTCTGTTTCTGAGATGAGGAGAAATCAAAGTGAACATTTAGACCAAGTTTCTCAACCTCAGGAAGGCAGCAGAGACATCAGTGAAGTTGGTTGTTTTCTAAGCCAGTATGTTCTACCTGTCAGACCTACCTTAAGTCATTGCTCCACTGACAGTCTCTACAACTATGGTGCTCAACAACCTACATGGAACCCCAGTGGGAAGCTGCTACCTGGATTGGACTGTGATACAGTAAACAGGAAGTCTGCAGAGCAGCCTGTGTCTCTCAGACAAATGCATAACACAGACTACACAAATACCAGTGATGTGTTGGAaagcacaccaacacaccaaTCACTGGTAGGCATATCTAAACAAAGGAGTTGCATCTTTCAAAACAAACCCACAATCCATGGCAGAGGGCGTTATAGTTGCCCAATTTGTTCAAAGCGCTTTGATGCTCCATCCAAGCTACAGCGGCATTCCCTGATCCATACAGGACAGAGGTCCTATCAGTGCCCCACTTGTCTCAAGACATTTAGACAAAAAGCTCATCTGAAGGTGCACCAGTCTGTTCATGAACAAAGAAAAGAGGCTAAACCCTCTACTAGTCATAGTGAAGACCGAGAAACCAAGTCTTTCTCAAGACCAAAAAGGACCCCATCTCCAAATGAAAAGGATGTAGTCTTTTGTAATAGGAGTCAGAAGACATCACGTGACAGTGATCTCTCTGCTGTCCCTCCATCCGACTGCCCTCTGACAAACAACGTCAACAGCCCACCACCGCCATCTGTTGCACCTAGGAAATTGGGGGGGTACCAGTGCATGGCCTGTCTAAAGAAGTTTGACTATCCTTCTAAACTCTCCCGACATCTCTTGGTCCACATGGGCATCAAGCCTTTCAGATGTGCCGTCTGTAGTAAATCCTTCAGACAGCTCTGCCACCTACAGTCTCACATGAAGGTCCACAATAGTAAGACCACACTGCATGAGGAGGGTCAACAGAAGAACATCAACTTGGCTCATCTGGACAACATTCCCCCTGAGGCTGGGGTTGTTTCTGAGGGACACGTCTTTGCAGCAAGTCTTCATCCAGATGAACCAGGCCCAAGTCAAACTTTTGGAAATAACATACAAAATAGTAATGGTGGTGAATCCTTATCTCACTACTGTTCAACAGAAAGCATGAACCAATCAACAGAAATCATCAGAAAGAATGAAACAACCCCAACCCCTGAACAGTCAGAAGACATGAAAAGCATGAAGTCAGAAAATAACTGCCTAGTGGAGCAGAAATGTATCTCGCCTCCTCAACTGACAAAGAGCACTTGGAATATTGCTGAAGAGAAACATGTGGACAAGTTTCCCTCGGATGAATATTATGGACAGCAAAACCACCCCCTGATTCCCAACTGGTTAAACCCCTATCCATATCAACAAGAAACCGCAAATAACAAACAGACATATCCAATTGCTACTCACCGTATTCCTTACCTGGAGGAACCAGGATCCAGCCACAGTGACCAACCGGAAATACCGGTTGATGTGAATCACAAGTTAAATCTATATCAATCCCCTTTAGAATCTCCTAGCACTAATTCACAATATGAAGCTAAAGATGAGGAAAGGTTGGAGGTTGGGCTTAGGTCAGAGTTTAATGTTACATACAAGTCAGAACCTCCCAACGACCTTCAAAGCTGCTCAGACTGTAGTCAGTGTTTTACCACCAAGGGGAAACTGAATCATCACAGGTGTTCTCCAAGACATTCAGTTGAAGAGAGGCAGGCGAGCTCATATCGGTGCGCTATCTGCTTCAAAAGCTTCGAGGCTCCCTCGAAATTGAAAAGACACTATGTTATTCACACAGGCCAGAGGCCATTTCAGTGTACAGTGTGTGGAAAGGCTTTCACCCAGGCAGGCCATTTGAAGACACACCTGCAAATCCACAGGTAAAAGACTTGGGACATTCACCTACTGTATAACGACTCTAATCACAGATCTCCACACACTCATATCTTACTTATATTTAccattctcctctactctctaacaTTAGCTTTTTGAATTGCAGAATATACCTTTTATTATGTATATTTTTCTGCCTTTCTATTCTGTCTTATTTTCTTGAAGTGGCTTTTATAGATGGTATTATATGGTTTAATGACTTTGTACTATATAGTAATGTACAAGTGGTGTATTAATTGGTTTTAACAATCTGCCTATTTACAGTGTGATATTGCATGTTTATGTGTTGCCTGCATTATGAATATGTAAATATGACAGCAGTCGGTACTTCTGTTTCACACACAAAGTATACACTAGTGCAAATGTGTCTTTAAGGCAGTACTCTGGCTGGCCATGGCATTATGGTGCTAGTTGGTTATagctaaaataaaatacattttgggtaGGTCTTGTTTTTGGAACTGAGGTAGGCATTATTTATTCTGAAAAACATTCTGAAAAATGTTGAGGATCTTAAGAGGAGACTACCTAAGCTGGATCAACGCCATCAGATAACTTGGGAAGTCGTTTCATTGTGACTTGCAGTACCACCTATTCACACAAGATGGCATCATGTCTATTTGTTTTGGTTGGTTGAGATGCGGTTGGAGAAGGAGAAGCTTCTGACTTCTAATGACCGATGTTATTCGGGGGGACACTTCAGTGTGAAATAAACGTTTTTTTTACATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391125 lncRNA upstream 13440 34343435 ~ 34343650 (+) True G345648
TU391124 lncRNA upstream 13707 34343174 ~ 34343383 (+) True G345647
TU391104 lncRNA upstream 50564 34301632 ~ 34306526 (+) True G345634
TU391108 lncRNA upstream 51605 34300560 ~ 34305485 (+) False G345634
TU391096 lncRNA upstream 67302 34285276 ~ 34289788 (+) True G345627
TU391135 lncRNA downstream 907 34365162 ~ 34365672 (+) True G345658
TU391162 lncRNA downstream 65555 34429810 ~ 34450645 (+) False G345681
TU391158 lncRNA downstream 65623 34429878 ~ 34436198 (+) False G345681
TU391159 lncRNA downstream 65623 34429878 ~ 34436198 (+) False G345681
TU391160 lncRNA downstream 65623 34429878 ~ 34436198 (+) False G345681
XM_036976143.1 mRNA upstream 18217 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 127818 34226453 ~ 34229272 (+) True LOC110520988
XM_021600979.2 mRNA upstream 158038 34168250 ~ 34199052 (+) False LOC110522532
XM_021600978.2 mRNA upstream 223194 34129848 ~ 34133896 (+) True LOC110522531
XM_021600973.2 mRNA upstream 683179 33669172 ~ 33673911 (+) True LOC110522527
XM_021600985.2 mRNA downstream 26614 34390869 ~ 34394175 (+) False LOC110522536
XM_021600986.2 mRNA downstream 30065 34394320 ~ 34397704 (+) True LOC110522537
XM_021600992.2 mRNA downstream 90937 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 172695 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 172927 34537182 ~ 34541410 (+) False LOC110522530
TU390035 other upstream 770779 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 803087 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 867306 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 870893 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 1652719 32694986 ~ 32704371 (+) True G343958
TU391145 other downstream 26718 34390973 ~ 34392263 (+) True LOC110522536
TU391481 other downstream 172746 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 456187 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 709684 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1469114 35833369 ~ 35833844 (+) True G347151

Expression Profile