RNA id: XM_021600985.2


Basic Information

Item Value
RNA id XM_021600985.2
length 1535
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110522536
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34390869 ~ 34394175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTCCACTCCACTCATAACAGGGCCTGGCATCCAAATAAGGAGAAAGAGGCCGCCGGGCGTAGTGGCGCTTGTAGACTAGACCTATAAATTGGGTTCTGCCCTCACCACACCACCGCTGCTCATTCAGAGGAACAGGATACTCGGTACTTATTTGAAACCCAGCTGACATCATGTGTGACGACGACGAGACTACCGCCCTTGTGTGCGACAACGGCTCGGGTCTGGTGAAGGCTGGCTTTGCCGGAGATGACGCACCTCGCGCAGTGTTCCCCTCCATCGTTGGTCGCCCCCGTCATCAGGGCGTGATGGTAGGCATGGGACAGAAGGACTCCTACGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCTGAGGAGCACCCCACCCTGCTCACTGAGGCCCCCCTCAACCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCCGGTCGTACCACTGGTATTGTTCTGGACTCTGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCGGGTCGCGACCTCACTGACTACCTGATGAAGATCCTGACAGAGCGTGGCTACTCCTTCGTTACCACTGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGAATGAGATGGCCaccgctgcctcctcctcctctctggagAAGAGCTATGAACTGCCTGACGGTCAGGTCATCACCATCGGCAACGAGCGTTTCCGCTGTCCTGAGACCCTCTTCCAGCCTTCCTTCATTGGCATGGAGTCTGCTGGTATTCATGAGACCACCTATAACAGCATCATGAAGTGCGACATTGACATCCGTAAGGACTTGTACGCCAACAACGTCCTGTCAGGAGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACCGCCCTGGCCCCCAGCACTATGAAAATCAAGATCATCGCTCCCCCCGAGCGTAAGTACTCGGTCTGGATCGGCGGCTCCATCCtggcctctctctccaccttccagCAGATGTGGATCAGTAAGCAGGAGTACGACGAGGCAGGCCCCTCCATCGTCCACAGGAAGTGCTTCTAAGCTCCCACTTGCCCATCGCTCCCCCCAGAGACAGTCAGACGACCACGGATGAAAAATCTGTTTACATTACCTCCGCCTATGGATATGTTGTTTATGACCCATATGCAAGTTACAAATCCAGACAGGCCCCTGTTTTATGTTTTGTCAATAATGTACAGTTTGTTTACACCCAAGTGTAATATGTAGATATTTATTTGCTTTATAAAAAGACTGGGATCTTGTATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391135 lncRNA upstream 25197 34365162 ~ 34365672 (+) True G345658
TU391125 lncRNA upstream 47219 34343435 ~ 34343650 (+) True G345648
TU391124 lncRNA upstream 47486 34343174 ~ 34343383 (+) True G345647
TU391104 lncRNA upstream 84343 34301632 ~ 34306526 (+) True G345634
TU391108 lncRNA upstream 85384 34300560 ~ 34305485 (+) False G345634
TU391162 lncRNA downstream 35635 34429810 ~ 34450645 (+) False G345681
TU391158 lncRNA downstream 35703 34429878 ~ 34436198 (+) False G345681
TU391159 lncRNA downstream 35703 34429878 ~ 34436198 (+) False G345681
TU391160 lncRNA downstream 35703 34429878 ~ 34436198 (+) False G345681
TU391161 lncRNA downstream 35703 34429878 ~ 34524839 (+) True G345681
XM_021600983.2 mRNA upstream 26614 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 51996 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 161597 34226453 ~ 34229272 (+) True LOC110520988
XM_021600979.2 mRNA upstream 191817 34168250 ~ 34199052 (+) False LOC110522532
XM_021600978.2 mRNA upstream 256973 34129848 ~ 34133896 (+) True LOC110522531
XM_021600986.2 mRNA downstream 145 34394320 ~ 34397704 (+) True LOC110522537
XM_021600992.2 mRNA downstream 61017 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 142775 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 143007 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA downstream 143032 34537207 ~ 34541410 (+) False LOC110522530
TU390035 other upstream 804558 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 836866 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 901085 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 904672 33472052 ~ 33486197 (+) False LOC110521085
TU389208 other upstream 1686498 32694986 ~ 32704371 (+) True G343958
TU391481 other downstream 142826 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 426267 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 679764 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1439194 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1514071 35908246 ~ 35908451 (+) True G347178

Expression Profile