RNA id: XM_021600986.2


Basic Information

Item Value
RNA id XM_021600986.2
length 2985
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110522537
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34394320 ~ 34397704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACATGTTAAGTCCAGTCACGCACACTGTACAGTACAATGTGGTATGTTAAAAAAGAACTACTGGAGGCTGCCCACTAAGTTGTTTCTTTACACCCTCTCAGGCAACCCAAGCGATTACTCAACCGAGATAGATAAACTTGGCTGGGAGTGTATAGGCTAAGGAATTATTGCGGCTTTAAGTACAAACAAATGCTTAGGCTACTGTAAGGTCATGTATTGTTGCTTAGCCTGACAGACTGTCACATGTGTTTTTATACAGACACTAGTGTAGTATGTCATGGTACATCAGCAACCGATGCAGGCATGTTCCAATATAGTCTCTCCAGACAGAAGCAGCTTAGACGTTGTAGCCTCCATCATGACAACAATAATAGTCCACATACAGAATAGGCCTACAGAGAATACAGACCAgaactatagtctctctctccgCCACTACTCGTTCTGTCACTGTCATGTGGTGGTCTTACAGGCGACAGACATCCCCTGTGATTTGAGCTTATGACCAATCATTTTTATTACATATTAATATGCTACATTTCCGCCTTATACTTGGAGAACAATGAAAGTCAAAAACATGGTGCCTCTTTCTGACTATAAACATGGTGCCTCTTTCTGACTATCTCCAACAATATCCGCGCGTGACGCAAGGGGAGTATACTTAAATCAGGATTAGCTCTCCATCAACATTAAACTCAACTGCCCTCCATTCAAGCACCGCGCGACATACAGTCCCGCGCGCACGGTCGAAAATAGGAGGGCTTTCTACTAATCAGCACTCAGGCTCGCGCGAGCAAAAGTGCTGGGGTTGTCGAGTGAGCTTTTAGCAGAGGCGCAGAAGGTAGAAGGCATGAGCGAACGCAGAAGCGGTGGGTTACCAATGCATTCTCCAGATACTGGATCATCCGGAGTAAAACACGGGAAACAATAGATTCCACAGGAATTTTGCACAGTGCACGGTGTGCTATCGTCTCCGAATGAATGACCATGGGGGAGTGGACAATATTAGAGCGTCTCTTGGAGGCGGCTGTCCAACAGCATTCTACTATGATCGGAAGGATCCTCCTAACTGTGGTGGTGATCTTCCGGATTCTAATCGTTGCGATCGTTGGAGAAACGGTCTATGATGACGAGCAGTCCATGTTTGTGTGCAACACCCTGCAGCCCGGCTGTAACCAGGCCTGCTACGACAAGGCGTTCCCCATTTCCCACATCAGATATTGGGTGTTTCAGATTATTCTGGTGTGCACCCCCAGTCTCTGTTTCATCACCTACTCCGTGCACCAGTCCGCCAAGCAGAAGGAGCGTTTGGAGCGGGGGTACTCCACCGTGTTCCTCTCCTTGGACAAGCGCCATGATTCCATCAAAAGAGACGACAGCAAAAAGATcaaaaacaccattgtaaatggaGTACTTCAGAACACGGAGAACTCCACCAAAGAAGCCGAGCCCGACTGCTTGGAGGTGAAGGACATCCCAAATTCGGCCATGAGAACTAGTGGAAAGTCTAAAATGAGGAGGCAGGAGGGAATCTCAAGATTCTACATCATCCAAGTGGTTTTCCGAAACGCGCTAGAGATAGGGTTCCTGGTGGGTCAATATTTTCTGTATGGATTCAATGTCCCCGCGGTATATGAGTGTGATCGATACCCCTGCATCAAAGATGTAGAATGCTACGTTTCCAGGCCCACGGAAAAGACAGTGTTTCTGGTCTTCATGTTTGCGGTCAGTGGCGTCTGTGTGCTCCTGAACTTGGCTGAACTCAATCATCTTGGGTGGAAGAAGATCAAAGTAGCTGTCAAAGGCGTGCAGGCCAGGAGGAAGTCCATCTACGAGATCCGTAACAAAGACTTGCCTAGAATGAGCATGCCAAATTTCGGCCGCACTCAATCAAGTGACTCTGCCTATGTGTAGCTGTCGATTTCAATACAACTGAATGGAACAATTGTAGCCTACAAAGAATTCACATATATTTATTAATAATGTGGTAGATATTTTATCTCACCGACTTCGTTTGCGAAGTAGGTCGGGTATATcgattgtatttgtattttatggATAAGTAAAAAACAAACGGACCAAAACGTTTGTTagtcatatatatacacatatacacatacgaGAAGGCACTGATGCAACTTTTTAGTATGGTTTATCCTATATTTTGTAAAGTGCTTCTTAAAAGCATGAATTTGTGTTGACATATTCACTCTGTCGTTCACTTCAGCTGTTGAACATGGAGCAAATACCTGCACTAAATATGAATAATGAGGCAAAATATATCCGATTTGTGACGATAATGACGTCTTTTAATGACATTCTGCCGGTTTTAAACTCCACATATCATTATAGGCACGAAACATACACATTATTTGGCAGTTTTAGGGTCAATATTCCTCAAATGTACACAAATGCATATTCATTCTTCTAGTAGGCTAGATCACTCCTTTCACATATTTGTCAGATAGATCTATGACATTAGCACTATAAAAGTTGTTTTGGTTGCCTGAGTTTGCACCATTGACCTTAACCTATGTGATCACTCCattggggaaagggggggggggtgacttttTATTTACACCCAAGCGCCCATTCCTTTTATTTACGTGGAAATTGATTTTCATGTCATCAAGTGCCATATTTGTACATAAATATAAACATGACCATATCTATAAAGTATTCTCTTCATTCCAGTAAAGGCTGTTGTCATCTTGGATTTAAATCACTGTGGTTTCTATGTAAATGGTATGCTACTATATTATTATCTCTGGTTTCATTTGCaacatacaaaaataaacaaCCTTTGCATATTCAAAAAGTATTGACGAGCAATTAGTCAAATAGACCACACATCTATAGTAAGCTGGAATCAATAACAAAGGGCAATAGATGTTGGCCCCTGGTGCTGCCATTTTCCAAAGCACTGATTTAAAGTATCAATGTACACTACATGgtgaaaagtatgtggacaccccttcaa

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391135 lncRNA upstream 28648 34365162 ~ 34365672 (+) True G345658
TU391125 lncRNA upstream 50670 34343435 ~ 34343650 (+) True G345648
TU391124 lncRNA upstream 50937 34343174 ~ 34343383 (+) True G345647
TU391104 lncRNA upstream 87794 34301632 ~ 34306526 (+) True G345634
TU391108 lncRNA upstream 88835 34300560 ~ 34305485 (+) False G345634
TU391162 lncRNA downstream 32106 34429810 ~ 34450645 (+) False G345681
TU391158 lncRNA downstream 32174 34429878 ~ 34436198 (+) False G345681
TU391159 lncRNA downstream 32174 34429878 ~ 34436198 (+) False G345681
TU391160 lncRNA downstream 32174 34429878 ~ 34436198 (+) False G345681
TU391161 lncRNA downstream 32174 34429878 ~ 34524839 (+) True G345681
XM_021600985.2 mRNA upstream 145 34390869 ~ 34394175 (+) False LOC110522536
XM_021600983.2 mRNA upstream 30065 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 55447 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 165048 34226453 ~ 34229272 (+) True LOC110520988
XM_021600979.2 mRNA upstream 195268 34168250 ~ 34199052 (+) False LOC110522532
XM_021600992.2 mRNA downstream 57488 34455192 ~ 34459207 (+) True LOC110522540
XM_036976146.1 mRNA downstream 139246 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 139478 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA downstream 139503 34537207 ~ 34541410 (+) False LOC110522530
XM_036976151.1 mRNA downstream 222196 34619900 ~ 34627191 (+) True LOC110522544
TU391145 other upstream 2057 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 808009 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 840317 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 904536 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 908123 33472052 ~ 33486197 (+) False LOC110521085
TU391481 other downstream 139297 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 422738 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 676235 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1435665 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1510542 35908246 ~ 35908451 (+) True G347178

Expression Profile