RNA id: XM_021600992.2


Basic Information

Item Value
RNA id XM_021600992.2
length 1499
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110522540
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34455192 ~ 34459207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGGTATGTGCACAGGACACCGTAGTGACGGAAGTGCCTGCTATGGAGGATACGAATGTATTTTTTATCCACGGGTTTGATCATAAATCGGTTTATTTATCGTTAGCCAGATTAAAAATGGCAGCAGTGTTTCTAGTTATGTTGTATGAATATTCTCCTTTATTTTACATTAGTGTCATATCCTTATGTTTCGTTGTTACCGCCGCCATGGTCCTCGGCTGGTTTGGTTTCGATGTCCCAGTGATTCTTCGTAGCTCTGATGAGACTGAGTCAGTCTTGCCTGTCCCAGAGAAGAGGATGGTTCAGGTGACCAACCCCTTTGCCCTGGAGATGGGGACCTCTGGGGTGGCCTCTGTGACTGAGGGTGTGTCCCTGCGTCCATGCTGCCTGGAGCCCTGTGTTCTGAGCTGTTACTGGGGTTGTGGTGTCCATGCCCTCCAGGGGGCGCTACAGACCCACCAACATGGCCCCAGCAGGCTCAGCACACCACAACAGTTCCAGGAAGCCCTGCACTTCCAGTACCACCACTGCCAAAGTTTCCATATCagtggagagaacagagaggagcactACAGCGAGATGCCAGCTGAACTGAGGATCACTGATTTTGGTCATTTGCCACGGGAACGTTATCCCCTGGTGGCTCTCCTCACCCTGGCTGAGCCTGAAGCCAGGGACACATACAACATTGCCGCCAGTGTCACCGTAGTCCATGTTCCAGATGACAAATACAGCCTGTCGGCACGGATCCTGTTTCAATACCTCCTCACGGCACAAGGGAACATGTATGAGTTAAAGTCACTCTTTATGTCAGCTGAGAGCATGGGGTTGTCAGGGGCGACTGACCCCGCCCCTAGCACAGAGATACCACCAGAACGACAGGAAAGAGAACATggaaaggaggaagagaagacaCCAGGAATGGAAGATGAAGAGGAGTGGTCACAGGAGGGAAAAGCCAAAGACTGTGTTGTGTGTCAGAATGCACCTGTTAACCGTGTTCTGCTACCCTGCAGGCACGCCTGTGTGTGTGACGGCTGTGTCCATCACTTCCAACACTGCCCCATATGCAGAGCTTTCGTATTGGAGTCGTTTGCCCTGTTCCACAATTCCCCTATGggggaggaagatgaggaagaatGAACTGTGATGCAGCAGGTCAATGTCATTAGAGTAGCTGTATGGTGGCCAGGATGTGCATGATCATTATCACTATAGGTACTGGTCCAATACAGATATAATAGTACCGTTTCATGGGAATCAGTGTCTATCATAGAATGGATGTGATATGGTTTTACGCCAAAGTCAtctattggacatttcaaactgtTGTAGGGCTGTGAGCATATACATTTTATCACGTTGATAGTTGTGTTGTAAACTATTCCTTAATcggtttgtaaacaatgtaagtAGATATGGAGAACCTACTATGTTTTTATGTGTAATGTAtagatgtattttatttattatcaATATACCATACATTAagttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391162 lncRNA upstream 4547 34429810 ~ 34450645 (+) False G345681
TU391172 lncRNA upstream 13447 34439083 ~ 34441745 (+) True G345688
TU391164 lncRNA upstream 16741 34436713 ~ 34438451 (+) True G345682
TU391158 lncRNA upstream 18994 34429878 ~ 34436198 (+) False G345681
TU391159 lncRNA upstream 18994 34429878 ~ 34436198 (+) False G345681
TU391489 lncRNA downstream 104576 34563783 ~ 34564321 (+) True G345967
TU391490 lncRNA downstream 106861 34566068 ~ 34566283 (+) True G345968
TU391526 lncRNA downstream 157591 34616798 ~ 34617208 (+) False G346002
TU391527 lncRNA downstream 157591 34616798 ~ 34617067 (+) True G346002
TU391530 lncRNA downstream 158131 34617338 ~ 34617753 (+) True G346003
XM_021600986.2 mRNA upstream 57488 34394320 ~ 34397704 (+) True LOC110522537
XM_021600985.2 mRNA upstream 61017 34390869 ~ 34394175 (+) False LOC110522536
XM_021600983.2 mRNA upstream 90937 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 116319 34318513 ~ 34338873 (+) True LOC110522534
XM_021598431.2 mRNA upstream 225920 34226453 ~ 34229272 (+) True LOC110520988
XM_036976146.1 mRNA downstream 77743 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA downstream 77975 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA downstream 78000 34537207 ~ 34541410 (+) False LOC110522530
XM_036976151.1 mRNA downstream 160693 34619900 ~ 34627191 (+) True LOC110522544
XM_021600994.2 mRNA downstream 168158 34627365 ~ 34630001 (+) True rdh14b
TU391145 other upstream 62929 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 868881 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 901189 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 965408 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 968995 33472052 ~ 33486197 (+) False LOC110521085
TU391481 other downstream 77794 34537001 ~ 34539460 (+) True LOC110522530
TU391730 other downstream 361235 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 614732 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1374162 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1449039 35908246 ~ 35908451 (+) True G347178

Expression Profile