RNA id: XM_036976148.1


Basic Information

Item Value
RNA id XM_036976148.1
length 2981
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110522530
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34536950 ~ 34541410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGAAGCTAACGTACCTGGCTAGCTAATTGCTCAACTAATTTATAGTCGCCTAGCTAGCTCATTAACTTTTTCGGGATTGTTCAGCAAACGTCAGTGAGTACTAGCTGTATGCATGGCATAACAATAAGATGTtgaactacaacaacaacacttTCGGTGGGCCCCACAACAACGGCTCCTCCTTGCTGGACAGGAAGGCGGTGGGGGGCAGTGGGCTGTTGCAGCACTGTGACTCGGTCACCCTTCCCAATGCTAAATTCAACCAGAACCAGTTCATCAACAGTCTGAAGGTGGACCCTTTCTCGCTCCTGATCGGTGGTTGCGGCAGCAAAAACAAGGAGAACTGCTTCCGAGATCGCTCCTTCTCAGAGACTGGGGAGCGCCTCAAGCCGGGCAGTCAGCTCCAGGGTCTCGGCATCGGACAGAGCCAGCAGCAGGTCAACTCCAGCCGCTATAAGACGGAGCTGTGCCGGCCCTTCGAGGAGAATGGCTCCTGCAAGTACGGTGACAAGTGCCAGTTTGCCCACGGCATGCAAGAACTGCGCAGCCTGAGCCGCCACCCCAAGTACAAGACAGAGTTGTGTCGCACTTTCCACACTATGGGCTTCTGCCCCTACGGCCCGCGCTGCCACTTCATCCACAATGCAGAGGAGCGCCGTGGCCCACCGCCACCCCTCTCCACTTTCAACAAGATGGAGCGCCCTCGCCTCCAGCACAGCTTCAGCTTCGCTGGCTTCCCCAGCCAGGGCGGTCTGCAGGTCAGCCCCACCTCGGTCACCCCGCCACCTATCTCCACCGATGAGGACATGAGTGACTGGCCCAGCAAACCCTTCACCTACACCAGCCAGGAGCTGGCCAACCTGTTCGGGCCCAGCTTAGGGGGGGGCCTCCCTGTCTTTGAGCCTGGTCTGCTGACCCCGGCAACGCCCTCCCCCACCGCCCCCTGCTTCTTCCGGCCcatgtcggagtctcccgccagtCCCCCGGACTCTCTCTCAGACCTGGAGGGCTACCAGAGCAGTCAGAGCGGCTCGGAGTCTCCCAGCCTGGACGCCTCACGCCGCCTGCCCATCTTCAGCAGGCTCTCCATCTCTGATGATTAGTgtctacaacccccccccccccatggtccCGTCCCTCACCTTGTTTACAACTCAGAAGTGGACATGGTAGTTCTATGCAGCAGTGTTGCCACTTAGTCCAATCAAAATGCAGATTTCCACCTCCGCTCCCCCCCTGCCCTCCTCATCTCAGATGAATCCAAGTAGCCAATGAACAGAGGTGTCTTTTATTTTACCCAAATGGTCACTAAAGAATTGTGATACATGGCAGTTAACATGAGAACACTAGTTCAAGACAAGTCGTCCTTGGGTGAAGGGCTACAATAACGTTGAATGGTAGAAGAGATGGATCAGAACATGTCAGGAGTCCCCTGTCGTTTTGGTGTGTAGCAGTTCTGCATATCGTCACGTGACCATTGCTGCCTGTGCCACAGCTATCTTCAAACCTCTCATCCTTCTACGCCTTGAGAGGATTTGTGACAAATCAGTGCTCCATTTACAATGGGTCACCTTTCTCTTAAAATTAAACCAGCAAAAATATTATTGGACAGTCAGTTCTGATGAAGTGCCTTGGTGATGTCCGATCAATGTGTACCAAGACATGTGGGACTACAATGGTTACTTTTAATGATCCCACGCTTTTTCCTGACCCTCTATTTTTGAATTGTGTAATTTTTGGATATGGGGACTAGACAAACGCACAGATGGCTTTTGTTTAGAATCAGGGTGGGaagaatacattttattttggtgCTGGTATGTGCTCTCTTGCACCATGACGACAACCCCTAAGAATAATCTGTGGTGCCCTTAGAAAATGTCTATCTGTAGTCGTGTTGAAGGTCGGAGGAGTAGGACTGTTCATATGAGTAAACTCAATCAATATTAATATTTGATCTTGgcctgtcctctgtctcccaggaccccccaccaccacccagctTAATAGCTGGCTGAGAGGACCCCTCAGTCTCCACTGTCAAAAATCTAAGTGAAAAGCTCTTTCATTAATTCCACCTTGTTCAACAGTATATTATTATTGTTTAGTTTGTTTTGAAGACCTTGGTTTTTCCTTGTCACTGATTATTTAACTTATCAGAATGTATTTATTGCTGATCTTAAggcattttttttgtatttatcttGATAATGAAACAATAGAATATATTTTCTTTTATGTTAAATTATGATCTTCTGTATTGATTGAAGTTGTTTTTTTCTTCCACAGTTAATATATTATAcagcaaatactttttttctgttTTGTAACTACactttgatttatttagaaagTTAATCTTAATTTAAACTTATTTTTGTTGTATTTATTGTTTTTCCCCTTCCCCGATGTTTGAACTGTGGTTCTATCCTAATCCTCCTTCCAGTTGTGGATTGCAGCAGCTCTCCAAGGTTCTCTAGAATGCAGAATTAGGCTTCAGTCCTTTTCCTGTTATTTCACTTTCTTTTGACCAGGACAAACATTAATTTTAGTATTTAAATCAGCGTTTTTATGCTGCTAACGACAAATGGAAATGTCTTGAATTAGTTAATTATGGACGCTCGCATATTCCACAATGCCATGAACTGATTTATTAGTTGTTTTTTTTGCCAAATAAGGTGATGTTTTGGTCATGTTTGTTGGACCAGTCATTCCCATTTAAGTACCTATCAATACATTCCAGGTATCCCCAAGCATTGTGCCTTTAACACACGTTTTAGAACACAGAGTAGATTTAAGCCTAAACCTCTTGTAGTGGAATAAAGGTGAACAGGGTTGACATCAATCAACAGGTGAATGTATTCTCTTTTTAGCCGCTGTTGCTGTTCTCTACAGTCTTCTTCATTCTCATGTATTATTTTTGTAATGACAGATTGCAGTTTAAACTTTAAACCAATAAAACCCATATTTCTATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391161 lncRNA upstream 12368 34429878 ~ 34524839 (+) True G345681
TU391162 lncRNA upstream 86562 34429810 ~ 34450645 (+) False G345681
TU391489 lncRNA downstream 22373 34563783 ~ 34564321 (+) True G345967
TU391490 lncRNA downstream 24658 34566068 ~ 34566283 (+) True G345968
TU391526 lncRNA downstream 75388 34616798 ~ 34617208 (+) False G346002
TU391527 lncRNA downstream 75388 34616798 ~ 34617067 (+) True G346002
TU391530 lncRNA downstream 75928 34617338 ~ 34617753 (+) True G346003
XM_021600992.2 mRNA upstream 78000 34455192 ~ 34459207 (+) True LOC110522540
XM_021600986.2 mRNA upstream 139503 34394320 ~ 34397704 (+) True LOC110522537
XM_021600985.2 mRNA upstream 143032 34390869 ~ 34394175 (+) False LOC110522536
XM_021600983.2 mRNA upstream 172952 34357090 ~ 34364255 (+) True LOC110522535
XM_036976143.1 mRNA upstream 198334 34318513 ~ 34338873 (+) True LOC110522534
XM_036976151.1 mRNA downstream 78490 34619900 ~ 34627191 (+) True LOC110522544
XM_021600994.2 mRNA downstream 85955 34627365 ~ 34630001 (+) True rdh14b
XM_021601000.2 mRNA downstream 266197 34807607 ~ 34822986 (+) False LOC110522546
XM_021600998.2 mRNA downstream 266197 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA downstream 266197 34807607 ~ 34831281 (+) False LOC110522546
TU391145 other upstream 144944 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 950896 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 983204 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1047423 33476693 ~ 33489784 (+) True LOC110521085
TU389960 other upstream 1051010 33472052 ~ 33486197 (+) False LOC110521085
TU391730 other downstream 279032 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 532529 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1291959 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1366836 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1497756 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile