RNA id: XM_036976151.1


Basic Information

Item Value
RNA id XM_036976151.1
length 1550
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110522544
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34619900 ~ 34627191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATGTAAATTTCGTAGAGTAATGTAAGGGAGGATGCTGTCTGCTATTTCCACTTTTCCATCAATAAAAGCTAGCCGATTCAAATTACTGAATTAAAAAGAAAAAAGGAAATAATATTCTCAAGGGGGCATTAGTCCAGAATACAATTAACATGGCATCGAAATGTCCTAAATGCGACAAGACAGTTTATTTTGCGGAGAAGGTGACATCTCTGGGGAAAGACTGGCATAAGTTCTGTCTGAAATGTGAGCGTTGTAACAAGACCCTGAACCCAGGGGGCCATGCTGAGCATGATGGAACTCCGTATTGCCACAAGCCATGCTATGCTGCCCTCTTTGGACCAAAAGGTGTGAATATTGGAGGTGCTGGCTCTTATGTCTACGAGGCGCCTGTCAATGATACCCCTGCCAGCGTTTCCACGGAAACAGAGGCCAAACCTGAGGAGAAGAAAGCTCATGCCAGAGGCCCAGTGAAGGCCGCAAGCTTCTCAACTTTCTCCGGAGAACCCAGTAAATGCCCAAGGTGCAGCAAGACAGTGTATTTCGctgagAAGGTGACGTCCCTAGGGAAGGACTGGCATCGACCCTGTCTGCGCTGTGAGAGGTGCAGCAAGACCCTGGCCCCAGGCAGTCACGCAGAGCATGATGGGCAGGCCTACTGCCACAAACCGTGCTACGCCACCCTGTTTGGGCCCAAAGGGGTGAACACTGGAGGTGTAGGAAGCTACATCTACCATGAACCCAGCACCGAGGCAGAGACTGAGGCCCAGCCTTGAGTTTACCCATACCCACCCAGACCTCTTCAACATTGCCTCCCTTACCCAGGCCTTGTTACTAACCCCAGTCGTAGATAGACTCACCCTATCTGTATTTCCAACCTCTGCCTACACCTTTGACTATGTTCACACCTGCCCTGATTAAATAGTATTGTCTCCTTTTGGCTATTCAGCATctacagaaaaaaaaacacatgttAAATCATACATAGTGTAGGCCTATTTAGAATGTTCTGTTGTATTTCTACATAAATTTTGTGTACGAAATGTCATCTTTATAGCTTCTCCCATCTAGCTAGCTTCTCCCTGTGAAATACACAGTAGGTTCATGGGTGTCCTCTACCTCGTTGTTCGTGTCAAATGAACAGTTGTGTGTAAGATGTACAGTACATTGTTTATTAAATGATAAGTCGCCATATGGTTTGACTCTACACAATACAGCCCACACCTATAGGGGAAGACTTGGGTGTGGTAGGCCTACTGTTTGTCATTCCCTGAAAACTATGTCCTTTGTTGTGCACCAGTAATGACATGGCTGACACAACTGCGTGATGTCCAAGCTATCCGCTATGGGCCTATTTTCACCCtgcagtatagagacagagtagATAGATAGAACATACGGCTACTAGGAATGTGCATTAGTATTAGCCTATTGTTGTTGGTGATTGAATATGTTTTGTACTTTGTGTCTTTGAGCACCAAATGTGTGTTACTGAGAAGAACAGTGGTCATCAGAGGTTTTCTACAATAAAATTGTGAGAACAGGAAAGG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24413 CRIP2_3, CRP2_3; cysteine-rich protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391530 lncRNA upstream 2147 34617338 ~ 34617753 (+) True G346003
TU391526 lncRNA upstream 2692 34616798 ~ 34617208 (+) False G346002
TU391527 lncRNA upstream 2833 34616798 ~ 34617067 (+) True G346002
TU391490 lncRNA upstream 53617 34566068 ~ 34566283 (+) True G345968
TU391489 lncRNA upstream 55579 34563783 ~ 34564321 (+) True G345967
TU391567 lncRNA downstream 55674 34682865 ~ 34683139 (+) True G346040
TU391581 lncRNA downstream 85427 34712618 ~ 34713059 (+) True G346054
TU391714 lncRNA downstream 100502 34727693 ~ 34727932 (+) True G346175
TU391727 lncRNA downstream 134682 34761873 ~ 34800749 (+) True G346186
TU391734 lncRNA downstream 139201 34766392 ~ 34767694 (+) True G346192
XM_036976146.1 mRNA upstream 78490 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA upstream 78490 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA upstream 78490 34537207 ~ 34541410 (+) False LOC110522530
XM_021600992.2 mRNA upstream 160693 34455192 ~ 34459207 (+) True LOC110522540
XM_021600986.2 mRNA upstream 222196 34394320 ~ 34397704 (+) True LOC110522537
XM_021600994.2 mRNA downstream 174 34627365 ~ 34630001 (+) True rdh14b
XM_021601000.2 mRNA downstream 180416 34807607 ~ 34822986 (+) False LOC110522546
XM_021600998.2 mRNA downstream 180416 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA downstream 180416 34807607 ~ 34831281 (+) False LOC110522546
XM_036976153.1 mRNA downstream 180416 34807607 ~ 34831281 (+) False LOC110522546
TU391481 other upstream 80440 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 227637 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1033589 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1065897 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1130116 33476693 ~ 33489784 (+) True LOC110521085
TU391730 other downstream 193251 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 446748 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1206178 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1281055 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1411975 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile