RNA id: XM_021600994.2


Basic Information

Item Value
RNA id XM_021600994.2
length 1852
RNA type mRNA
GC content 0.52
exon number 3
gene id rdh14b
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34627365 ~ 34630001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCACATGAGCATGTGAAGGTTTTGCAAAGCCTTGTGGATGTTGTTGTTCATTCCTTTCTCACTGTGTTACATAAATATTGTAAGTGAAACATAAAAGTATTCGCTTTAATGTCAGCTGCGATTATTGTGGCCGCTGTCGTCGGCGGTGGAATACTGCTAATTGTTCGCAGAATGTTCCCCCGGAAGAAAGCGGTCGAGTTGCTCCGGTACCCGGCCGATATGATGCGGGGAAAGACTGTCATTGTGACCGGGGCGAACAGCGGCATAGGGAAGGCCGCGGCCGGGGAGCTGCTCAAACTCCAGGCCCGGGTGATCATGGCCTGTCGGGATCAGCAGATGGCTGAGGAAGCTGCGCAGGACATCAAGAAGCAAGCGGGGCCAGAGCACGGAGAGGTGGTGATCAAACACCTGGACCTCGCCTCGCTTCAGTCTGTGCGGAGCTTTTGCGAGGAGATCCTGAAGGAAGAACAACAAGTCGACGTGCTCATCAACAACGCAGGCATTTACCAGTGTCCCTACACGAAGACAGAGGAGGGGTTTGAGATGCAGCTGGGGGTCAACCACCTGGGTCACTTCCTCCTCACCCACCTCCTCCTGGACCTCCTCAAGCGCTCCTCCCCCAGCCGCGTGGTGGTGGTCTCCTCCAAGCTCTACAAGTATGGCAGCATCAACTTCGACGACCTCAACAGTGAGAGAAGCTACAACAAAGCCTTCTGCTACAGCCAGAGCAAGCTGGCTAATCTGCTCTTCACCCACCAACTGGCCCGGCGCCTGGAGGAGGAGGGCGTCACGGGGGTAACGGTCAATGCCCTCACCCCAGGCATCGTGAGGACCAGGCTGGGCAGGCACATCCACATCCCCTTCCTGGCCAAACCTCTCTTTTACCTGGCCTCGTTGTTCTTCTTCAAGAGCCCACTGGAGGGAGCTCAGACGCCACTCTACCTGGCGTGTTCACCCGACGTGGAGGGCGTGGCGGGGAAGTGCTTCGCTAACTGCGAGGAGGAGGAGCTGATGCCCAAGGCGACGGACGATCAGGCGGCCAAGAGACTGTGGGACCTGAGTGAGACCATGGTGGGGATAAAAACTCAATAAGAGACCTGGGTTCCAGACTCTCTTATAGAGACCATATGAGAGACTTGCCCTGGGAATCAAGTGAATTGGGAGATGATTGATTGAGACTTCTTGGGGTTTCATTGGAACTGGGGTCAGTGGGTAAAGTTTCCACTGTTTTTAATTAACCTCGGtatgtgggtgcgtgtgtgtgtgtgggcgcgtGCATGCGTGGGTCCGTGTGTGCACCTATAATTGTGTGATGTGCAAATGAGGTGTGGATGGAGTGTGAGTGTGATTGGAGGTGTGCAATGTGCCTGTGAAACTGAGAACTGCAGTCTTCCATGAATGTGTAACTAAGTATATCCGTTCCCATAGGAACCAGCTATTCTATCTCCTGTACTGTCTTCACCAGTGTTCACTGAATCAGAAGTTCACACAGTCAAAGTGGAGGGGAGCTAATTCCCAGTAGCGATTATCAAAGGGGAGCTGAACTGTCATATTTGCTTTTTCCGAGTGCGAACATGATTGGTTATAGTGCTATAGAAATATCTCCGGGGTGGTTTGAAAAGCCAACAGGTATGTAGTTCAGCAGCTGTAAGTAAATGCGAAGGCGGCTAAGCTCATGCATCCTGCAGCATGCACTTGGCAGTAGAAAAAGGAATAGGAGACTGGTTGTGTTGCGTTACCTAATCCAGTTTTCCTCTCATGATGTGTTTGACGTGTGAATTCGTCACCTTCTGCTGTGACAGGATGGACGGGAACAATAAAGTTGACAATGAGATTCAGATTCAGTCAGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11162 RDH14; retinol dehydrogenase 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391530 lncRNA upstream 9612 34617338 ~ 34617753 (+) True G346003
TU391526 lncRNA upstream 10157 34616798 ~ 34617208 (+) False G346002
TU391527 lncRNA upstream 10298 34616798 ~ 34617067 (+) True G346002
TU391490 lncRNA upstream 61082 34566068 ~ 34566283 (+) True G345968
TU391489 lncRNA upstream 63044 34563783 ~ 34564321 (+) True G345967
TU391567 lncRNA downstream 52864 34682865 ~ 34683139 (+) True G346040
TU391581 lncRNA downstream 82617 34712618 ~ 34713059 (+) True G346054
TU391714 lncRNA downstream 97692 34727693 ~ 34727932 (+) True G346175
TU391727 lncRNA downstream 131872 34761873 ~ 34800749 (+) True G346186
TU391734 lncRNA downstream 136391 34766392 ~ 34767694 (+) True G346192
XM_036976151.1 mRNA upstream 174 34619900 ~ 34627191 (+) True LOC110522544
XM_036976146.1 mRNA upstream 85955 34536950 ~ 34541410 (+) False LOC110522530
XM_036976147.1 mRNA upstream 85955 34537182 ~ 34541410 (+) False LOC110522530
XM_036976148.1 mRNA upstream 85955 34537207 ~ 34541410 (+) False LOC110522530
XM_021600992.2 mRNA upstream 168158 34455192 ~ 34459207 (+) True LOC110522540
XM_021601000.2 mRNA downstream 177606 34807607 ~ 34822986 (+) False LOC110522546
XM_021600998.2 mRNA downstream 177606 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA downstream 177606 34807607 ~ 34831281 (+) False LOC110522546
XM_036976153.1 mRNA downstream 177606 34807607 ~ 34831281 (+) False LOC110522546
XM_021601004.2 mRNA downstream 263128 34893129 ~ 34900917 (+) True LOC110522552
TU391481 other upstream 87905 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 235102 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1041054 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1073362 33552127 ~ 33554003 (+) False G344647
TU389956 other upstream 1137581 33476693 ~ 33489784 (+) True LOC110521085
TU391730 other downstream 190441 34820442 ~ 34822182 (+) True LOC110522546
TU391880 other downstream 443938 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 1203368 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1278245 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1409165 36039166 ~ 36072956 (+) True LOC110522562

Expression Profile