RNA id: XM_021601004.2


Basic Information

Item Value
RNA id XM_021601004.2
length 2009
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110522552
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34893129 ~ 34900917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACATACAGCACAAAAGGAGTCCCCTTTGTCGCATGCTGATGACGTCAGGAATGAAAAATATTCGACAACATGGAGAAGAAACATGTGTCAGCTTTTGAATTGTACCAAAATGCGCTATTAGAATCGACTCCTGAAGTTAAACCATCATCTGTGCAGGTtataccaaagaagaagaagcggAAGGAAAATGGCATCCAGACCCCTAAACCCATCAAAAAGGCCAAAATGAAACCGATGGTCAAGCAGGTCATCAAATCGTCTCcgagagaggagaggttggagagacTTGAAGAAGAGGTGCAGTGTGGAGAGAAAAGCGGACAAGCACTAGAGGCTCTGCTGAGTGACCTGGCTGAAGTTAGCAACAGCCGGGAGAGGGCCAGTAAACTGTTCCAGTGGCTCATCCAACCCATTCCTTCCAAGAGCTTCTTCAGGGATACATGGGAAAAGAAGCCAGTTTTGATCAAACGTCAGAATCCAGACTACTACAAGGGACTGTTCTCCACAACAGAGTTTGATCGCATTTTAAGACAGGATGATGTTCAGTATGGAGTGAACCTGGATGTCACCAGCTACACAAACGACAAAAGAGAGACACACAATCCTCCAGGGAGGGCTCTTCCTTTCACTGTATGGGAGTTCTATGAGAGTGGTTGCTCCCTCCGTATGCTGAACCCCCAGGCCTTCTCCTCCACTGTGTGGAGTGTTCTGTCCATCCTCCAGGAGCAGTTTGGCAGCATGGCAGGAGCTAATGTGTATCTGACACCTCCAGGAACACAAGGCTTTGCTCCACATTATGACGACATCGAGGCCTTTGTGGTTCAGCTGGAAGGGAAGAAGCACTGGAGAGTTTACAACCCCAGGTCAGAAGATGAGGTCTTGCCCGTTGTTTCCAGTCttaACTTCAGCCAGTCGGAGATCGGGAAGCCCATCCTGGAGGTGGTTCTGGAGGCTGGGGATCTCCTCTACTTCCCCCGAGGGTTTATCCACCAGGGGAACTGCCTGCCGGATGCTCACTCCCTCCACATCACTGTCTCATCTTACCAGAGGAACAGCTGGGGAAACCTACTGGCAAAGGTGGTCCCAGCAGCCCTAGAGATGGCCATGGAGGAGGACGTGGACTTCAGACGAGGTCTGCCTGTGGATTACCTGACTTACATGGGGGTGCAGAACTCAGACAAGgaggatCCACGCAGGGCGCAGTTCCTATCCAGAATAGAAGGGCTGATGAAGAAGCTATCAACCTTTGCTCCTGTGGATGCTGCGGTGGATCAGAAAGCGAGGGATTATCTCCATGACTGTCTCCCCCCGATGCTCACCGCAGAGGAGCGGGCCAGCAGTGTCCAGGGAGCTCCTTCCAGGTGGGAGGATGGAGAGGCTGTGGACGTGGGTGTGACCATCAGGGGCCAGACCAGAGTCAGACTCATCCGTTCTGGAATCGCCAGGTTATGCAGTGATGGAGAAGCAGTTTGGCTTTACTACACTGCAGACAACTCCAGAGTCTACCACAAGGAGGAGCCCAAGAGCGTTGAAATAAAAGCAGAGCAAACAGACGGCATGGAGTTTCTGATCCATGCGTATCCAAAGTTTGTGACAGTGGGCAGTTTGCCATGCGAGTCGGCTGAGGACAAGGTGTCCTTGGCTGAGCTGCTGTTTGAGAAAGGGCTTATTCACACTGCAGAACCTCTGCAGCGATCCTGAATCATGGAGGGACTCTAAAACAAGTTTCACAAGAAATATATGCTGCACCAGCATCATTCACCTCTCACTATGTGTAGGAAGAATTTCTGTTTTTAGGACAGCAGTCGAATAAACTCTGAGCAGTGCATCAGCATTGCCCTCTACAACTAACTCCCCTAGGCTCTTCCAAAAACTATGGTGCAATGCTGGAACACAATGATCAATCAAAAGTAATAGGTCTGTAATAGCCCACTTACAATATTAATCTTTACTTGTTCAGTAAGTATTGCATTAAAACAGTCTTGCATATTGGTGTGTAAATCAA

Function

GO: NA

KEGG:

id description
K16914 RIOX1, NO66; bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391772 lncRNA upstream 52688 34838866 ~ 34840441 (+) True G346229
TU391769 lncRNA upstream 56119 34832451 ~ 34837010 (+) True G346227
TU391764 lncRNA upstream 79471 34813416 ~ 34813658 (+) True G346222
TU391727 lncRNA upstream 92380 34761873 ~ 34800749 (+) True G346186
TU391734 lncRNA upstream 125435 34766392 ~ 34767694 (+) True G346192
TU391808 lncRNA downstream 24806 34925723 ~ 34926041 (+) True G346264
TU391839 lncRNA downstream 86478 34987395 ~ 34988003 (+) True G346294
TU391841 lncRNA downstream 87225 34988142 ~ 34988828 (+) True G346295
TU391894 lncRNA downstream 209037 35109954 ~ 35115330 (+) True G346342
TU391899 lncRNA downstream 240070 35140987 ~ 35141198 (+) True G346346
XM_021600998.2 mRNA upstream 61848 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA upstream 61848 34807607 ~ 34831281 (+) False LOC110522546
XM_036976153.1 mRNA upstream 61848 34807607 ~ 34831281 (+) False LOC110522546
XM_021601000.2 mRNA upstream 70143 34807607 ~ 34822986 (+) False LOC110522546
XM_021600994.2 mRNA upstream 263128 34627365 ~ 34630001 (+) True rdh14b
XM_036976157.1 mRNA downstream 1933 34902850 ~ 34916426 (+) False LOC110521087
XM_036976158.1 mRNA downstream 1933 34902850 ~ 34916426 (+) False LOC110521087
XM_036976159.1 mRNA downstream 1933 34902850 ~ 34916426 (+) False LOC110521087
XR_005051525.1 mRNA downstream 1933 34902850 ~ 34916426 (+) False LOC110521087
XM_036976160.1 mRNA downstream 4182 34905099 ~ 34916426 (+) False LOC110521087
TU391730 other upstream 70947 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 353669 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 500866 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1306818 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1339126 33552127 ~ 33554003 (+) False G344647
TU391880 other downstream 173022 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 932452 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 1007329 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1138249 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 2259177 37160094 ~ 37161123 (+) True G348133

Expression Profile