RNA id: XR_005051525.1


Basic Information

Item Value
RNA id XR_005051525.1
length 3757
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110521087
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 34902850 ~ 34916426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCAGTGACCTTTGACGTTTAAGCGGCAAACAATGTCTGAGTCGATGGAAGAAGTGTGGACAATCGTTGCTAAAAATGTCATAATATTGTAATGTTAGACTCTTCGTGTTATTGAATTTTTTGCTCAATTGCAGTTAAAACCTGTATGGCACTTGATGTATGACAGCTGAGGAAAATGACGTCTATTATCAAACTGACTGCTGTGTCAGGGGTGCAGGAGGAGTCTGCCCTCTGCTACCTGCTGCAGGTGGATGAGTTCCGCTTCCTCCTGGACTGTGGCTGGGATGAGAGCTTCTCCATGGACATCATTGATTCCATGAAAAGgtATGTCCACCAGGTTGATGCGGTGCTCCTCTCCCATCCTGATCCCCTGCACCTGGGGGCCCTGCCCTATGCTGTGGGCAAGCTGGGCCTAAATTGCCCCATATATGCCACCATCCCCGTCTACAAGATGGGTCAGATGTTCATGTATGACCTGTATCAGTCGCGCAACAACACTGAGGACTTCAACCTGTTCACCCTGGATGATGTGGACTGCGCTTTCGACAAAATCCAGCAGCTGAAGTACTCCCAGATTGTCAATCTGAAAGGGAAAGGACATGGTCTGTCCATCACTCCACTTCCTGCTGGTCACATGATCGGAGGGACCATCTGGAAGATTGTgaaggatggggaggaggagattgTTTACGCGGTGGACTTCAACCACAAAAGAGAGATCCACCTGAATGGGTGTACGTTGGAGTCGGTGAGCCGTCCCTCTCTTCTCATCACAGACTCGTTCAACGCTACATACGTACAGCCGCGTCGCAAGCAAAGGGACGAGCAGCTCCTTACCAATGTAATGGAGACCCTACGCGGCGACGGCAACGTGCTGATCGCGGTGGATACGGCAGGCCGTGTACTGGAGCTGGCTCAGCTGCTGGACCAGATCTGGAGGACAAAGGACGCAGGGCTGGGGGTCTACTCTCTGGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCCAAGTCTCAGGTGGAGTGGATGAGTGACAAGCTGATGCGCTGCTTCGAAGACAAGCGCAACAACCCCTTCCAGTTCCGTCACCTGTCCCTGTGCCACAGCCTGGCCGACCTGGCTCGCGTGCCCAGCCCCAAGGTGGTGCTCTGCAGTCAGCCCGACCTGGAGTCTGGCTTCTCCCGCGAGCTCTTCATCCAATGGTGTCAGGACGCCAAGAACTCTGTGATCCTTACCTACCGTACCACGCCCGGAACCCTGGGCCGCTACCTCATCGACAACCCCGGGGAGAAGATGCTGGACCTGGAGATTAGGAAACGGGTGAAGCTGGAAGGCAGAGAGCTGGAAGAATACCtagaaaaagagagaatgaagaagGAAGCTGCCAAAAAACTTGAACAAGAAAAAGAGGTGGACGTGGACTCGAGTGATGAGAGCGACATGGAGGATGACCTGGAGCTGCCGGCGGTGGTGAAAACCAAACACCACGATCTCATGATGAAGGGAGACGGCGTCCGCAAGGGCAGCTTCTTCAAACAGGCCAAGAAGTCTTACCCCATGTTCCCCACCCACGAGGAGAGGGTCAAATGGGATGAGTACGGAGAGATCATCAGACCGGAGGACTTCCTGGTACCAGAGCTCCAGGCCACTGAGGAGGAGAAGAACAAGCTGGAGTCGGGCATGGCCAACGGGGACGAACCCATGGACCAGGACTCCTCATCCAAAGTACCCACCAAGTGTACCTCCACTACGGAGAACCTAGAGATCAAAGCCAGGGTGACTTACATCGACTACGAGGGCCGCTCGGACGGCGACTCCATCAAGAAGATCATTAACCAAATGAAACCGCGGCAGCTGGTGATCGTGCACGGCCCCCCCGAGGCCAGCCTGGACCTGGCCGAGTCCTGCAAGGCCTTCACCAAGGACATCAAGGTCTACACGCCCAAGCTGCAGGAGACTGTGGACGCCACCAGTGAGACACACATTTACCAGGTGCGGTTGAAAGACTCACTGGTGAGCTCGCTGCAGTTCTGCCGCGCCAAGGACACAGAGCTGGCGTGGATCGATGGCGTACTGGACATGCGCGTGGTCAAGGTGGACACAGGCGTGCTGCCTGAGGAGGGCATGGTGAAAGGCGAGAAGGGAACTGGCGAGGAGGTTGTGGAAGACAGTGAGCTGGCCATGGACGTGACCCCTGCTGACGATGCCACCACGGACCATAGCGTGGTGGCGCAGCAGCGCGCCATGAAGACGTTGTTTGGCGAGGATGTGCGCGAGCTGTCGGAGGAGAGTGATGTCATCCCTACCCTGGAGCCTCTGCCTGCCCACGAGATCCCAGGCCACCAGTCAGTGTTTATCAACGAGCCGCGGCTGTCCGACTTCAAGCAGGTGCTGCTGAGGGAAGGCATCCAGGCTGAGTTTGTGGGAGGAGTGCTGGTGTGCAACAACATGGTGGCCGTCCGCAGGACGGAGGCGGGGCGCATCGGCCTGGAAGGATGCCTGTGTGATGACTATTATAAGATCCGTGAGCTGCTGTATCAGCAGTATGCTGTGGTGTAGGAGAGAGGAGCAACATGCAGCAGAGATGGTGTCAGTCATGACAGTATCACACAGACGGGATGGAGGGGAGCGAGGACTATTACCCAGAGGACCACAGGGTTTTAGTGAGAGACAGATGGGCTTTTCAGGAGTGACCTCTTCTTGATGTGAACACATGATGTAACCCTTAGGGTCATTTTTACCTCTCCTCAAGCCCCCTCGGCTCTGGACTGGGCTGGCGAGGTGAAAGCTTACCACACGCTGGAGAGTCCCAACATCGTTCGACGTAGGCTGGAATggtttatctgttttttttgtttctcattaaagctgcaatatgtattgttttgggtgacccgaccaaattcacaatAGAAATGGGAGTTTTTGATCTGtctttctcattgaaagcaagtttaAGAAGTTGTAGATCTCttgtatttctatgcttcccattacgttttgtttttgcatcttttactttcggatTCATACACCAGCTTCTAACAGCCAAAACTGCTATATTttgggttattgaaaatatatttcaccatggtttagatggtacaatgattctctacagtatacattgtttgttttgtcacacaaacagAGATTAGGAGAAccattagaattttagcaaccaggaaattgcGACTCAATTATCGCATATTGGAGCTTTAAATTCCCTTTTCTGAACAAATAAATGTGTTTGTTTCCTATATATTTTTCCGTGGGTCGAGAGAGGGGAATAAGACGTGTATACGCTGTcggcagggttggggtcaatttagGAAGTGAACCATGTTTCAATGAGGTccatttttttaattgttttttttgtttattttcatttttacTTCCTGAGTTGATTAAATGGAATTGAAATGAAATTGCCTGTATGTAAGCAAGTACCAATACAGGGGCTTTACTAAATGGTACTGCTGCAGTTACAGTATGACACCACCAGATGGAGCTATGTTTCATCCATTCTGTCTGCCTCAGATTCCCTTTATCAAGTGTGTTCACACAGCAGCAATTCCAGGGTTAGAGATGACATTGTCCCTGCAGTAATATCTTGGTAAATTAGCATAATGCACTGTCATGTACATAACACGCTAGAATAGTCCATTCTCTCATGCCTGTATTTCAGGTAACTGAAATCAGGTTTATTATGAGACCGAGAAAAgtaaaaatggattttaaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU391772 lncRNA upstream 62409 34838866 ~ 34840441 (+) True G346229
TU391769 lncRNA upstream 65840 34832451 ~ 34837010 (+) True G346227
TU391764 lncRNA upstream 89192 34813416 ~ 34813658 (+) True G346222
TU391727 lncRNA upstream 102101 34761873 ~ 34800749 (+) True G346186
TU391808 lncRNA downstream 9297 34925723 ~ 34926041 (+) True G346264
TU391839 lncRNA downstream 70969 34987395 ~ 34988003 (+) True G346294
TU391841 lncRNA downstream 71716 34988142 ~ 34988828 (+) True G346295
TU391894 lncRNA downstream 193528 35109954 ~ 35115330 (+) True G346342
TU391899 lncRNA downstream 224561 35140987 ~ 35141198 (+) True G346346
XM_021601004.2 mRNA upstream 1933 34893129 ~ 34900917 (+) True LOC110522552
XM_021600998.2 mRNA upstream 71569 34807607 ~ 34831281 (+) False LOC110522546
XM_021600999.2 mRNA upstream 71569 34807607 ~ 34831281 (+) False LOC110522546
XM_036976153.1 mRNA upstream 71569 34807607 ~ 34831281 (+) False LOC110522546
XM_021601000.2 mRNA upstream 79864 34807607 ~ 34822986 (+) False LOC110522546
XM_036976163.1 mRNA downstream 13824 34930250 ~ 34970463 (+) False LOC110522553
XM_036976162.1 mRNA downstream 14072 34930498 ~ 34970463 (+) True LOC110522553
XM_036976164.1 mRNA downstream 333191 35249617 ~ 35418424 (+) True LOC110521089
XM_036976166.1 mRNA downstream 645562 35561988 ~ 35723593 (+) False LOC110521090
XM_036976172.1 mRNA downstream 645562 35561988 ~ 35723593 (+) False LOC110521090
TU391730 other upstream 80668 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 363390 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 510587 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 1316539 33584978 ~ 33586311 (+) True LOC110522521
TU390025 other upstream 1348847 33552127 ~ 33554003 (+) False G344647
TU391880 other downstream 157513 35073939 ~ 35074338 (+) True G346334
TU392774 other downstream 916943 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 991820 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 1122740 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 2243668 37160094 ~ 37161123 (+) True G348133

Expression Profile