RNA id: XM_036976181.1


Basic Information

Item Value
RNA id XM_036976181.1
length 3365
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110522555
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35732092 ~ 35761259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCATGCGCAGTTACTCTGCAGTGATGCAAGCTTTCCCAACTCACCACACACCCGCTAAGTGCGATCAACCAGCGAGAAGAATAAAGACGATACGGATACGCTCATCTTGAACATGTTATGTGGGCTAAATAACAGAACCTGCTCACCACCTGAAGACAACTGTCCCAGTTGAAGTGCTATGGCCCCTGCTGCAGTGAAGAGTCCTAGCCTCAGGCCTTCATAGTGGACATTGCCCTATCAACACACACAGGTGTAGGCCAGGATCAGACTCCCGGAGCAGGGATGATCACTTCTCACCAGAACGGAGGACCCGGATATGTAACAGAGGACCCAATGGGGCCTGTAAATGGCACGGAGGGTCCTGGGAGTGGAGCCaagctgcagcagagagagagggctgtggATGTCCCCCCTGGGGACCGGGTGGTGGGAACTGTTAGCAGCATGGTGCAGGGTTCCCGCAGCAGCGCCCAGATGGAGAGGATGCAGCAGTACCAGGAAGAGCTGAGGAGGAAGCGGGAGGAGGACGCCAACAAAGGGAAGCATGAAATCGATCTCAATGCCTCGCTCAGGCTCAAGAAGCTGGCCCAGAACCCAGCCAAGACGGGTATCGACAACCCCACGTTCGAAGCGCCTGAGGCAGGCAAGGAGACCAAGGATGGGAGCCCCCTGCCTGGTGGGGACACGGCTGCGGAGCTGGAAGATCTGCTGGAGGCCCTACGACGGGTGCAGAGCTGCCTAGTGGACACCCAATCGCAGGCCGACGTGGCTCTGGTGCTGGGCATGCTGCACAAGGAGGACTTCCAGAGCGCCTTCACCATCCACAGTGCCGTGACCCAGCAGATGCAGCCGCGTGGCAGCCCGCCCTTGCCCCTCACCTCCCAGGCCCAGGGCCTCTGCCTGGAGgtGCAATACATCCTCCAGTCCACTCAACATAAAGAGGGTGTAGAGCTCAGTAACCTACTCACCACTCCCCACCTCCAGGCTCTGATACAGGCCCATGACAGGGTGGCAGAGCAGGAGTTGGAGCCGGACCCAGAAGAGAGTGTGATTCAGTACATGGGAGAGACCGTCAAACTGGTGCGGCTGGAGAAGGCCGGTGACatgcctctgGGAGCCACAGTTCGTAACGAGATGGACAGCGTGGTGGTGAGTCGCGTGGTGAAGGGCGGGACAGCCGAGCGGAGCGGACTACTGGCCGAGGGAGATGAGATCCTGCAGATCAACGGCGTGCCTGTCCGTGGGAAAAACGTCAATGAGGTCCATGACCTTCTGACGGAGATGCATGGCACTTTGACCTTCCTTCTCATCCCCAGCTCTCAGAAGAAAACTCCCCCACATAGAGAGACGGTGATGCACGTGAGGGCGTATTTTAACTACGACCCATCTGATGACCCGTACGTGCCATGCAGGGAGCTGGGCCTGTCCTTCCGGAAGGGAGACATCCTCCACATTATCAGCCAGGACGACCCCAACTGGTGGCAGGCCTaccgggagggagatgaggacaACCAGCCCCTAGCCGGGCTAGTACCAggGAAGAGCTTCCAGCAGCAGAGAGAAGCTATGAAGAAAACCATTGTGGACAGGAATCCTGACAGCCCAGGGAAGCTTTGGTGTTCAAAGAAGAACAAAAAGCTGAGGAAGAAAACCATGTACAACCCCAGCAGCAACGTTGACTACTCCGCCGATGACATCCTGACCTATGATGAGATGGCGCTCTACCACCAGCCGGCCAGTCGCAAGCGACCCATCGCCCTGATTGGTCCGCCCAACAGCGGGCAGGACGAGCTGCGGCGGAGGCTGCTGTCAATCCAGCCGGACAGATTCGCCAGCGCCGTGCCACATACAACGAGAGGCCCACGGATACAtgagaagaatgggagggagTACCACTTTGTGAACAGGCTGGCGTTTGAGACGGACGACGCAGCAGGGAAGTTCATCGAGTCTGGGGAGTACGACAGGAACTTGTACGGCACCAGCAGTGACTCGGTTCGACAGGTCATCAACTCAGGCAGGATCTGTCTGCTGTGCCTGCACACTAAGTCACTGCGGGTGCTCCGGTCCTCCAACCTCAAGCCCTATGTGATCTTCATCGCTCCTCCCTCTCAGGAGCGATGGCGCACCCTGCTGGCCAAGGATGGAAAAAACCCAAAGCCAGAGGAACTGAAGGAGCTGATGGAGAAGGCCTGGGAGATGGAGCAGGCCTACGGCCACCTGTTTGACACCGCCATCGTTAACAGCGAGCCAGAAACAGCCTTCCACGAGCTGCTACGGCTCATTGACAAGTTGGACACAGAGCCCCAGTGGGTACCCTCCTCCTGGTTGTGCTAGGGGTCAGGGGTGAGGGTTCACCCTAGAGGTCAACCCCAGGGAGCCTCATGAATGAGTGTggcctgggtcgtgttcattaggcaccaaacggaacaAAACAGATTGAAACTGGAAGGGACTACATGGACTCGTCCAATAAGAACCCCCTGTTTTCATTTTCAGGAAAAAAAAGTAAATGTTTCACTACAGTgtaccctaatgaacatgacccacagCTCTGACCCTAAAAGGAAGAACGGACAATGATCGTTGAGGCCACCGTTAGACCCTCGTTGACACAAAATAGAGGGCCTATGCCTTCTCTGACCAAAAGGGTGACTTGTCCTTTAACTAGCCTTCTTATGGTAGGTGGACTTTACATTTGCAGAGATGGATACGGTCTGAtatatgtgtgttttgtctgtgtgAATGTTCTTTTGTGTCAATGTTGTCAACATTCCAGTAGCCTATGCAGACATTTATCCGAAACTgtagaaaacatatttcaacctcAATAGTTATTTCTGAttgtaaaatgtgtattttttagAAGAGATGGTAAACAAATGTGGTTTACAACGCACAGGAACAACATCTCTCAATGGAGGACCAATTTGCTATGTAACTTTCTCCTAGACGTGAGAACCAAAGAGAAGCCGTTTGTATTCTAAATATGGTAAGGTGTGTGTATAAACGATAGTACTGTGTTGTGTTGCTGCGCTTGTACCTCGATCACCTTAGTAGCTATTGTCTAGTTAGTGTATCGAGGGGCTCGATTCAATAATTATCGCCGGAGATAATATAGCGTGCTTGAAGTTACGGTCATTCCCCGACACATGCAGCGTTTATTAGGAGTCCAGTCTCCGCAAACGTGGGAATGTTGCCTTTCAACTTCAATCGCACTGAACTTTAAATCGCGCTCCTCATTAAGGTGAATAATTAGGAGCTGTAGCCTACTTCAACAATTAATCTGACAAACATTTTTCATTGGTACTTTATAAGCAGAACTCAAGAAGCCATCTTCAATAAAATTAACATTTCTCTTGA

Function

GO: NA

KEGG:

id description
K06091 MPP5, PALS1; MAGUK p55 subfamily member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392727 lncRNA upstream 16094 35715107 ~ 35715998 (+) True G347104
TU392726 lncRNA upstream 17372 35714243 ~ 35714720 (+) True G347103
TU392669 lncRNA upstream 130213 35601005 ~ 35601879 (+) True G347049
TU392602 lncRNA upstream 190357 35541438 ~ 35541735 (+) True G346999
TU392580 lncRNA upstream 214445 35517446 ~ 35517647 (+) True G346979
TU392751 lncRNA downstream 19115 35780374 ~ 35780720 (+) True G347128
TU392765 lncRNA downstream 36002 35797261 ~ 35800244 (+) True G347142
TU392764 lncRNA downstream 40558 35801817 ~ 35802060 (+) True G347141
TU392776 lncRNA downstream 78131 35839390 ~ 35839665 (+) True G347153
TU392778 lncRNA downstream 80698 35841957 ~ 35842279 (+) True G347155
XM_036976170.1 mRNA upstream 8499 35561990 ~ 35723593 (+) False LOC110521090
XM_036976187.1 mRNA downstream 42689 35803948 ~ 35819308 (+) False LOC110522558
XM_036976188.1 mRNA downstream 42689 35803948 ~ 35819308 (+) False LOC110522558
XM_036976191.1 mRNA downstream 42691 35803950 ~ 35810800 (+) False LOC110522558
XM_036976189.1 mRNA downstream 42691 35803950 ~ 35819308 (+) False LOC110522558
XM_036976190.1 mRNA downstream 42691 35803950 ~ 35819308 (+) False LOC110522558
TU391880 other upstream 657754 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 909910 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 1192632 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 1339829 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 2145781 33584978 ~ 33586311 (+) True LOC110522521
TU392774 other downstream 72110 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 146987 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 277907 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 1398835 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1684208 37445467 ~ 37497006 (+) False LOC110522576

Expression Profile