RNA id: XM_036976187.1


Basic Information

Item Value
RNA id XM_036976187.1
length 2989
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110522558
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 35803948 ~ 35819308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGCCGCTAGAGAAGGGAGGTAAAGTGTAGTCACAAGGCTGAGACTGTTACACACAAGTACATTGAACGTGGCGGGGAAACATCCGGCTGGGAGGTGTGATCATTGTCAGGAGGTGATGGAGACAGTGGATGTTCTATTTCAGTGCCAGAAATatgtgagagaaagggagcgatTGTTATTAGATTTGGGACTGAAGAGCCAGGATTAAGTGAACTGCTGGGACATCTTCAGGGGATGTCGTTTTTAATTATGTATTTCGTTTAGTTTGGGAGACGAGATTATTGGGTAGAATAAAACCTTCACTGTCTCTGGTCCACAATCCAGACcggttggtggcggtaatgcaccttaaagttggttgccaaccgccatataaaatccACAGAAGAAGACCAATTTCTTCCCATTagaaacgacaggctgtggtctatttTGGGTTAGTTATTTAAAAAATCGTTGTCCAGTTTCCGCTCTGTTTTAGCTATTTAGCTAACTAACGATCTAGTTAGTTGTTTAGCCGTCTTTGTTTATATTGATAAAACACTCTTATTTTGACACAATTTAGGTCGCCAACCTATCGTCAGTAATTTAATAAGTGCAAGCTCGCGAAAAGAAAGAAAGCAACCACGAAGAATATGGAGGTTGATTTCCCAGAGCAAGACGCTAGTAGCACGGACGAAGAAGACATCGTCAGCTCTTCTGTATCTGAAGATGGAGACAGCTCGGAGATGAACGACGAGGACTGCGAGAGGAGACGAGTGGAATGCATGGACGAGATGACTACCCTGGAGAAGCAATTCGGCGACTTGAAAGAACAGCTGTACAAGGAGAGGCTCTGTCAGGTGGATATAAAGCTACAGGAGGTCATAGCAGCCTGTGCCCAAGAGTATCTGGAACCACTGGCCAACCTACAGGAGAATATGCAGATCAGAACTAAAGTGGGCGGGATCTACCAAGAGCTGTGTCTGGAGTCTGTGAAGAACAAGTACGACTGTGAGATCCAGGCTGCCTGCCAACACTGGGAGAGCGAGAAGCTGTTGCTGTTTGACACAGTGCACAGTGACTTAGAGGAGAAGATCAGACGCCTGGAGGAGGACCGACACAGTATCGACATCACCTCAGtactttgtagaagcacctttggcagtgattacagctgtgagtctttctggAACTGTGGAACGATGGTTTATGTTCACGGAAGAACAAGACGAAGGATCCCTTCTGCCCTGTCAAGAAAAAGAAGCCTGTTGTTGTCTCAGGTCCAtatattgtttacatgttgcaaGACCTCGATGTACTTGAAGACTGGACAGCAATACGAAAGGCACCACAGGCGGAGGTGACATTGGGGTCGCACAGGGTCAAGGTTGATGtccctACCAAGGCGGACAGACACGATCATGTGGCGAGGTCAGAGGAGGGCAGACTGTTCTATGACAGCCAGTGGTAGTGCAGAGGACAGGCCTTGTGTATCAACAAGAAGGACCAACACACTACCAGCGCCATAATAACCGCCATAAACCATGACGAGGTGTGGTTCAAACAGCCTGACTGTCCAAACTCTACGTCTCTCAGCTGCAGGAAGGCAAATACACCATCAAACACTCCTAAAGTCCCTCACAGCCTGCCGTACTCTTTCACCCTGGATAACAGATGAACTCCACTGCCATAATGTCCTCTCCTTTATGTCAGTGGACTTAAGCAagcctggtcctggagagctacaggtcAGGATGTGTAGGGTCAGTGACTGACTAATGCTCTTTGTATGTTAATATGATCTGCGAGGCCAACAAGTGTCATTCCTTCTCTAAACTGGAAACGAGAAGTGAAATTCTGGTTGTAAGGAGGAGTGGTGTTGTAGTGGgtctttagtgtattttacccccCTTCTCCCTAATTACTATCTTgtttcatcgctgcaactccctaactggctcgggagaggcgaaggtgaaTTCCGAAACATGACTCGCCAAGCCGCActccttaacacccgccagcttaacccggaagcccgccgcaccaatgtgtcggaggaaacactgttcaactggcgACCGTGGTCAGCCTGCAGTCACCTGGccagccacaaggagtcgctagagcgcgatgggccAAGTAAAGCAACCCCCTCcccgcgatgcagtgccttagaccgctgcgccactcgggaggccccatagTGTGCCTTTTTTTGCCTACAGTCTTGAACTAACTCTGCTCTTCTGGCCGGTGAGAACAGGACGAGGATCAAGTCAAGGACAATTGGTTGTGACTGGATGGCTGGCTAAACCCTGGCCCTAGTGATGTTTCCTTCACTGTGAGACCCCCACCTCTTGTAGTATTCCATGTCTAGTCATCTTTCATGTCTCTGTTACTATTCTGATAAGGATACACCGCTCTCGCTTTTTCTGTCTTCCTGCCCTCCTCAAGGGGACATGATACCATTTTCACCTAACCAATGCTGTCAGATGTGTTATCAATTGACGGAAGGATGGATGTTAACTGTATTTTAGCATGGCCAAGGTCAGTAGAGATGTGTCAAAATGTCTGGTTGTTGTACAATCACGTCCATGCCATCCTAGTCTTTTGCACATTATTGGATATTGTGGGAAAGCATTTGTTTGTCTGTGTATAAAGTACCACCTGccaacagttttttttatttttttatatcttAAGGATTCTCAACATATTATGAATTGTGTAGATGTTACATGCTGTATATAATGGGAGCATATGCTGGGTTTTTTTCGCAGCCTATGAAGAATTCTACTTATGTCCGTCTGAGTACGACCAGACCGAATGTTTCACTGCCATCAGTTGAACAGTAGTCCTGCTGCCTTGAGGTTTTATTTGTAAAGTTGTTTTATTTACGCTCCGTCTACACTTCATTGTCATGTTATGCGGGAGGAAAATCGAAATAAAATGTCAGTCACAATTCATGTACagcaaataaaatatttaattttgTAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392764 lncRNA upstream 1888 35801817 ~ 35802060 (+) True G347141
TU392765 lncRNA upstream 3704 35797261 ~ 35800244 (+) True G347142
TU392751 lncRNA upstream 23228 35780374 ~ 35780720 (+) True G347128
TU392727 lncRNA upstream 87950 35715107 ~ 35715998 (+) True G347104
TU392726 lncRNA upstream 89228 35714243 ~ 35714720 (+) True G347103
TU392776 lncRNA downstream 20082 35839390 ~ 35839665 (+) True G347153
TU392778 lncRNA downstream 22649 35841957 ~ 35842279 (+) True G347155
TU392759 lncRNA downstream 63886 35883194 ~ 35884241 (+) True LOC118964470
TU392797 lncRNA downstream 81793 35901101 ~ 35901315 (+) True G347173
TU392801 lncRNA downstream 88381 35907689 ~ 35907940 (+) True G347177
XM_036976179.1 mRNA upstream 42689 35732092 ~ 35761259 (+) False LOC110522555
XM_036976181.1 mRNA upstream 42689 35732092 ~ 35761259 (+) True LOC110522555
XM_036976170.1 mRNA upstream 80355 35561990 ~ 35723593 (+) False LOC110521090
XR_005051526.1 mRNA downstream 63860 35883168 ~ 35884240 (+) False LOC118964470
XM_021601019.2 mRNA downstream 219788 36039096 ~ 36123362 (+) False LOC110522562
XM_036976203.1 mRNA downstream 319648 36138956 ~ 36154366 (+) False LOC110522563
XM_036976197.1 mRNA downstream 319648 36138956 ~ 36154599 (+) False LOC110522563
XM_036976200.1 mRNA downstream 319648 36138956 ~ 36154599 (+) False LOC110522563
TU391880 other upstream 729610 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 981766 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 1264488 34537001 ~ 34539460 (+) True LOC110522530
TU391145 other upstream 1411685 34390973 ~ 34392263 (+) True LOC110522536
TU390035 other upstream 2217637 33584978 ~ 33586311 (+) True LOC110522521
TU392774 other downstream 14061 35833369 ~ 35833844 (+) True G347151
TU392802 other downstream 88938 35908246 ~ 35908451 (+) True G347178
TU392876 other downstream 219858 36039166 ~ 36072956 (+) True LOC110522562
TU393877 other downstream 1340786 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1626159 37445467 ~ 37497006 (+) False LOC110522576

Expression Profile