RNA id: XM_021601019.2


Basic Information

Item Value
RNA id XM_021601019.2
length 5348
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110522562
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36039096 ~ 36123362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagaaagagatctgagagcagagagacagagagagagagagagagagagagagagaaggggaagagagagagactacaggaACGCAGTCAGTTGCCTGTGCTGCTCAGTACCAGAAACAGGGAGCTGGGGAGGAAATGGAGGGGCTCAGGATCATCGGCGGGAACTGACATTAcagaccaggagaggagaggagagggagaactattggagaggagaggaggaaaggaaggggCTCGTCTGCACAACAGAAGATTTCTAAGgAGAGAGCCCAGGATTGAATGGGACCCACTATGCCGCCCAGTAAGAAGGCCAGGAGCCAGAACAACGGATTAGTAGCCACCCAGGGTCTGAGTCCTTTCTACAGGGAGGCGGAGGCAACAGACCTGTCCTTGTCCCTGTCGGCCTCCTTCTCCAAGGCCGAGGACGAGGAGCTCACCAGCCTCTCCTGGCTCCACGAGAGCACCAACCTTCTCAACAGCTTCTCTCACTCGGGGCTCCGCTCCGTCTCCCCCCTGCAAGATCCTGATGGTCACCCCataccccccctctccccttcctcctcctccccctcccccgaTCCATGTGACTCCTCTTCCTACGACATGGCCACGGGAGCCAATAGGAAGCCCCCGTATTCCTTCAGCTGCCTAATCTTCATGGCAATAGAGGATGCGCCATCCAAGAGGCTGCCGGTGAAAGATATCTATGGTTGGATCCTGGAGCATTTCCCCTATTTTGCTAGCGCCCCTACAGGCTGGAAGAACTCGGTGCGCCATAATCTGTCGCTCAATAAGTGTTTCAAGAAGGTGGACAAGGACAGGAGTCAGaGTATAGGTAAAGGCTCGTTGTGGTCCATAGATCCAGAGTACAGACACAACCTGATCCAGGCCTTGAAGAAGACCCCGTACCACCCCTACTCGCCGGGACTGGTTACCCCCTTCACCtcttctcccacctctcctcAGGCATATCACAGtcctctACTTTGGCCAAGGAGTCCCTTCTTCAGAAAGAATGGAGTTCTCTTACAAGTTTCTCAAGGCGTGATCCAAAATGGGGCCTGCGTCAGGAGCCATTGTCTGTTTCCTGTCATCCGACCCCTACCCATTAGCCCCGTGGGCAGAAGGACCACTGCGATAAGGTCAGCTCTGGGAGACTACCTGACCCCCTGTGACACCTCCCACCCTCCCAGCGACGACCTCCAGGAGGACCACAACTACAGCAATGCCAAATCCCCCAGCATGCCCTGTTCTTCCCAGGGGCCCTCCGTGTCCGATGAAGACGATGAAATCATTGCAGTGGAGGTGGGAGTCCACCGAGGGGTCAAATCCGAACCTAAAGAAGTCCCACTGGACTCTGCCTCCGTCTCCTTCCTATCCCAGCATGCCCGGCGACGGGGACTGCCCTGGACCAAAAACCGCCTGCGGGCCCTGAGTGACACACTGCCGCTGAAGAAGCGCCGTTCGGCAGCATCGGCAGAGAAGCCGCCGTTGGAGAGCGATGATGAGGAGATGAAGGAGGCGGCTGGGTCGTTGCTCCACCTGGCGGGCGTCAGGGCGTGCCTCAACAACATCACAAACCGAGCCAAGGCTGCTCAGAAAGAGAAGGAGCAGAAAGAGGCCCTCAGAAATTAACTAATGCCAGGCCATAGAGAGGCCTACACATCAGGCCTGTACACCTGGCCTACACACCTGGCCAGCACACCTGGACTACACACATATCGCCATGGCCTAGAAAGTAATAGCTGAGACACGCCACAAAGACCAACGGCTAAAAGCAGCGGGTTGGTGTGGTGTGTTGCAAGGTGTGTTAgcaatcacctgctgggtgttgACAAATGGTGGAGATTCAACATGTAGAAACGTTGTGAAATGAACAGAAATGGACAGCAGATATTCTGGTCAGAGTAGATAGGAAGGACACCAGCTGCTTCTAACCATTGGTGGTGTGTTGTGTCTCTGCTGCCTGATTCCCACTATTGACCCAAACTAAAGCCTATACTGTGCTGGCTCTGAACATGTATTTTCAGAGTGTCCTTTCCAGCATGGTTCCAGCAGCAACTATGGTGGATGAGGGTAACCAGGCCAGGAAGCCCCAGTACATCTCGGCTTGGCTCAGCTCAACTTTGGCTTccatagtgtgaaaagggtatatGGCCAGGCCTGAGCACAGAGTCCTTCAGTAGGACTACACACCAGGTCTACACACTGACCTATCAACCACCAACGGGCCAAGACATAGAACTCTATTCAAGCATTAGTCTCAATAGACATTACttcatctatctctctcactctatctctctctagctctctttctctcctccaggGGCATTAGGAGCATCCTACTTATTTGTGGCAATATCAGAAATCCATGTTTTCCTATATGTTTCCTATACGTTTCCTATATGTTTCCTATACATTTCCTATACGTTTCCTATATGTTTCCTATATGTTTCCGATACGTTTCCTATACGTTTCCTATACGTTTCCTATATGTTTCAATGCTAACTCTGATGGGTAATTGATTCTCATGTGTCTCggttgatgttgatgtttttaTGTTGTGTAAAGGGATGCAAGCCATAGAAAAATATGTTTTGTCACTAATTAGGGAAAAACATAGTAGAAAATGTCATGTTTGAGGAGACTAGCTGACCGGTTTGTGTAATCTGTAAGTGTCAGAGGTTACGTCTGTGAATCTGTAGCAAATGTCCAGTAATGTAAGCAAGGAAGTTGAGCCAATAATACTTACAGTTTTAAAACAGTTAAAACCTGCTGCTCACACCTCCTACGCCCATGAGCACAACATGTAAGACTGTGCCAAAGACAAGCGACCAGGTTGCCTGATGTAGCCAATCTGCTTACAAAGACAAATGTAAAGGCATAGCAACAACATATATGGTAATGTACGGCTCAGTTGGTGGAGCACGGCTGTTGCACCACCTAGGGTTGTGGATTCAATACCCGTGGCTACCCGCATAAATTGTGTTCATGCacgactgtaagttgctttggataaaagcatctgctcaATGGCAATGAGTATATTATTACATCAGAAGATCTTCAGTGAAGAGACAGGAGAATACCGTAAATGTCTACACAATTGTAAAAATCTGTTCTTAGAGAATCACGCATGCACTTAATTGACATTCATTACAGCAATTTATATTACCAATAGTAAAGGCATCATGGAGAACGGGGCACGATTCCTTTAAGAGCACTTTTTAATATTTAAGGATAATTAGAACTTTACTGTTACAATGGTTttttgttgtcatggtgatgaCTTAGTGCCGGGTCAGAGGCAATATATCTCCTCCATCTTGTGCTTGTTGCTCatctgcatctgaaatggcaccctattccctttatagtgcactaccttgtCCAGAGCGTCatgggctctggccaaaagtagtgcactatatagggaatagggtgccatttcagacacagattCACTTAGACTTTGTCCCTCAAACTCTTCCAGAATTTCTCTTCTATTAAAAAGTGAATGTCAGTTTAAATATACCCCATGTTACGACACCTGCCTATCATTTAACAGACTCACAAAACTATTTACATAAATTGTGGATTCGTTGTCGTTTTTATCTCTGTTTGAAATGTTTCCCATTCTTCCTCTACCTACTCTCATGAAAGTATAAGCAATTTGTCCAGTCTGGACAACTGTAAAAAGGTtagaaaatattttatttttcctttCTTAATTGAAGCAATTTGACCTGCAGGACTTTCTCAGTTATATTGCATGGGTGCTTGTAAATAAGATACAAAAGTAAATCATTTTTTATTCAAAGATCATGtaatataaacaatgtatttagcATGAAGCATGACTTATTTTCATATAAACTTAGATCCTACAAGAGAAAACTAAGTTTTTTGCAGACAATTCTTATTCCCTCGATTTTTgtttaatttaatttgattttgttTGTTGTAAATTGATAATTGTATTTCTTCAGATGAGCAGATTTAAAAATACAAATCTTCTTCAAGGAGAAATGTTATGGGGAAATCACTCTGCATTTATGAGGCCCTTCTACTCTGGGCTTTAGGTATAacagacctgggtttaaatactatttgaaagctttcaaatactttgaatgACCTtgagtgccagatgggcggggtttgtaCTTTGGGACTTTTCTATTTGTTCCATTGAGGCAAGCCCTATCAAGCACAGCCCAAGTATTTTAAATAAGGTCAAATACTGTAGCGTTTAAACCCATGTCTGTTAGGTATAAGGCGAGATTGAAAAGCCTCTAGTCTTCTGCCTCTTAAAAGATAAATATGTCAATGGTCTAGTGTTTTTCAGAAGTtatcaatagtgtgtgtgtgtgtgagtgtttgtgtgtgtccaacAACCATACACCCTTTAACATTGTGCTTGTTCTCAAGGCGTTGTGTTCCGATGTCTTTGATTGACATGATTTTATATTGAACAGCACATATTTCTTTATTTATCAcagtattttctcattttgtgaaTATGTTACTATTGGGTCCGAGTTTTCTCCTGGCAGAAACCTCAGTGTAAACTGACGGAGTATAAGGAACTGTTTAACATGGAATTTAGAATTCGTCAGAATGTTCAGAACAGAAGTTCCACTGTTCTAATTGGCTCCCTAGTCTACACCAGATTAGCATAGGCAAACCTTTTGTTCAAAGTTATGTCAGATACAATATATTAATGTATGACTCAATAGAGCCTGTTTTTATGGATTATTTACTTTGGAAAAATGACAGTACAAAGGGAAAGTATTATATAATGAGCGATGTTTAAACCCTGCCAATTGTTTAAGTTTTGAGTGATTCTGTACATTTAGCCCTGCCGTAGATGATTAGTGTAAGCTATAATGAGAATACATTAAAGCCTTAGTCAGTTCATGCTCTGGTATGTCCATATATACAtgcatacatttaaatgtttacctttatttaactaggcaattcagttaagaacaaattcttatttacaatgacgggcctGCCTAGAACAACATATgtttgaccttgtcagcttggggatttgatccagcaacgtTTCAATTACTGActcaaagctctaaccactaggctacctgctgcccaaaactgtacaaacatacatacatacatacatacatacatacattggaGTGAGATAATGAACATGTTTCTGGTACAACCAGCAGAGGTAATAGGGTTTGGACTGAGGTTATGTGCAGAGTAGAGTcagagtagagtcagagaggtccagagagagtcAGAGTAGAGTCAGAGTAGAGTCAGAGTATAGTCAGACAGGTCCAGAGAGAGTCAGAGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392838 lncRNA upstream 57170 35981148 ~ 35981926 (+) True G347210
TU392801 lncRNA upstream 131156 35907689 ~ 35907940 (+) True G347177
TU392797 lncRNA upstream 137781 35901101 ~ 35901315 (+) True G347173
TU392759 lncRNA upstream 154855 35883194 ~ 35884241 (+) True LOC118964470
TU392778 lncRNA upstream 196817 35841957 ~ 35842279 (+) True G347155
TU392869 lncRNA downstream 2046 36125408 ~ 36128082 (+) False G347233
TU392870 lncRNA downstream 2046 36125408 ~ 36128082 (+) False G347233
TU392871 lncRNA downstream 2046 36125408 ~ 36128082 (+) False G347233
TU392868 lncRNA downstream 2832 36126194 ~ 36128082 (+) False G347233
TU392872 lncRNA downstream 2832 36126194 ~ 36128946 (+) True G347233
XR_005051526.1 mRNA upstream 154856 35883168 ~ 35884240 (+) False LOC118964470
XM_036976190.1 mRNA upstream 219788 35803950 ~ 35819308 (+) False LOC110522558
XM_036976203.1 mRNA downstream 15594 36138956 ~ 36154366 (+) False LOC110522563
XM_036976197.1 mRNA downstream 15594 36138956 ~ 36154599 (+) False LOC110522563
XM_036976200.1 mRNA downstream 15594 36138956 ~ 36154599 (+) False LOC110522563
XM_036976201.1 mRNA downstream 15594 36138956 ~ 36154599 (+) False LOC110522563
XM_036976198.1 mRNA downstream 15595 36138957 ~ 36154599 (+) False LOC110522563
TU392802 other upstream 130645 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 205252 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 964758 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 1216914 34820442 ~ 34822182 (+) True LOC110522546
TU391481 other upstream 1499636 34537001 ~ 34539460 (+) True LOC110522530
TU393877 other downstream 1036732 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1322105 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 2281283 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 2308817 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 2767021 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile