RNA id: XM_036976196.1


Basic Information

Item Value
RNA id XM_036976196.1
length 5460
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110522563
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 36138956 ~ 36158325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCACTCGCAGCTCCATGCTCGGTATATAAAGGAGGACAACGGCGGGTGAAGGACGGCTGGGAAGGCAGAGTCCGTGTTTGTAAATAAGACCGTTAAAATCTGTGTTTTATTTACAAAAGTTATGCCGGCTATTTTTAAGTGTCGTGCCCAGTTGTTTTAGAtcgttttttaatttatttttttgctgttaTTCCTCGCTTGATTTGTGTGGTTTTACACTACGCGTAATGGCGAGCTCGGCTAACTCGAATCAAGTGCCTAAACTGTACAGGTCTGTGATTGAAGATGTTATCAACGAGGTCCGGGAGCTCTTCCTGGATGAGGGGGTGGACGAGCAGGTCCTCATGGAACTCAAAACGcTGTGGGAGAACAAGCTAATGCAGAGTAAGGCAGTGGAGGGCTTCAACACAGAGGAGCAGGCTGCCCTCCAGGCAGCAGCCCAGCAGCAGGCACAACAGGCCCAGCAGGCCACCCAGCAAGCCCAGACACAGCAGGTCCTCCTGCCCCCGCAGCAGCAAGTGACGAGCTGGCAATCGACCCGGCCTACTGTCACCAGCGCACCCCAGCAGCAAGTCATTGTGCAGGATCCTAAAATTCTGCAGCATATGAGTGCAACAGGGATGAGTGCAGCAACCACAGCAGCAACCTTGGCCTTACCAACAGGAATCGGTCCCTACCAACAACTCATCACTAGCCAAGGCGGCAATTTGCCCCAGACTATATATCTTAAAACAGTGGACGGTCAGATCCTCCAGGTGCTGCGTGCGGCTAACGGGACCCAGTACATTATCCAGCCTCAGCAGCAGATGGTCCTTCAGCAGCAGGTCCTTCCTCAGATGCAGCCTGGCGGTGGGCAGGCCCCCGTTATACAGCAGGTACGCCCCATCACACAGGTACTGGCTCCTCTCCAGGGAGGACTCCCCCAGGTGCTGGCTCCTCTACAGGGAGGCCTCCCCCAGCAGACAGGAGTCATCATCCAGCCTCAACAGGTCATCCTCACTGGGAACAAGGTCCAGCAGAATGCACAGGTAATGCAGATGACAGGCCAGCCCGGTCAGGTGCAGCAGATCCAGCAGCAGGTTCAACAGGTCCAGGGCGGAGCTGCACCAGGAGGCccacagcaacagcagcagatCCAGCAGCAGGTCCAACAAGTTCAACAGGTCCAGGGCGGAGCTGCACCAGGAGGccaacagcaacagcagcagatCCAGCAGCAGGTCCAACAAGTACAACAGGTCCAGGGCGGAGCTGCACCAGGAGtcccacaacaacagcagcagcagcctcctaTGATGCTGCAGGTGGACGGAGCGGGGGACACGTCCTCAGAGgaagaagatgaggaggaagagtATGACGAGGAGGAAGATGAAGAAAAGGAAAAAGATGGCGAGGACGGCCAGGTGGAGGAGgaGCCTCTGAATAGTGAAGATGATGTGAGTGACGAGGAGGACCAAGAACTGTTTGATACAGAGAATGTGGTGGTGTGCCAGTACGACAAGATACACAGAAGTAAGAACAAATGGAAGTTCCACCTGAAGGATGGGATCATGAACCTGAACGGCCGAGACTACGTCTTCTCCAAAGCAATCGGGGACGCAGAGTGGTAAAACACACAGCACAAAgaatgcgtcccaaatagcactctagtacctatatagtgcactacatagggaatagggtgccaatacatagggaatagggtgccatttggaacacagaaaggaacacacaacaacaacaaaaacaccacGAAGGAACTCTGGAACTTTCTGTCAAGTTTGAGAAAGAGACTCATCAATAACTATGACCCAGGGAATCATATTTCAGCCAGAGGACCTGGGATGGGCTGGTTTGGGAAGgaaataaacataacacaccaccCAAAACTGTGATACTGACTGATGCACATCTGTATGAATGGTATATATGTATTAACACCCAATACCCTTCAAGCCTCCCAAGACAAGCCACTGAGGATTCCATGCAGCACGGCCGAGGGATCGAAGGAGAAATCTTCTTAGTTTCTTTGTTTGACTGAATTCACCTCCATTTTGACCTGACTGTTTTCTCCCACTTCTAGTGGACCAGATATAACCACTGACTTGAGTTGACCCACCCTAAACACTTTATGCCAATAGGTTTGAatccaggtcaaaggtcagataaAATATCCAGTGATTGGACAGGGAGTCTTTCGATCCCAGTTGTGTGCCTAGTGATTGGCTAGGAAACACGTCAATCAATCCCAGTTTTTTTCAGTGACTGGGCACCACACAGTGAAGTTGACGCCAGTGTATTGAGTTGAGATGGCTGTTTGAAAAAGGTTGACGTTATTACCTTCATCTGCTTGTAGATCTGGGTCCATGTCACTGATATGATATTCCTGCCACATGTTCTGATGGTCCATACTAAAAGTGCCCTCCTGTTTATCTAGTTGATAGTGATAGCCACTGTGTTCAGCAGTCCAGTTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATGGCCACTGTGTTCAGCAGTCGAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATGGCCACTGTGCTCAGCAGTCCAGCCCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCGAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATAGCCACTGTGCTCAGCAGTCGAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCGAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGCTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATAGCCACTGTGCTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCAAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGAGCTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATAGCCACTGTGTTCAGCAGTCCAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCGAGCTCCCCTCCTGTTTATCTAGTTGATAGTGATATCCACTGTGTTCAGCAGTCGAGCTCACCTCCTGTTTATCTAGTTGATAGTGATAGCCACTGTGCTCAGCAGTCTAGCTCCCCTCCGGTTTATCTAGTTGATAGTGATAGCCACTGTGCTCAGCAGTCCAGCTCCCCTCCTGTCTCTGTTTTAATATTGTTTTATCATGATGAAGAACGAACACTAAAGGCAAAAGGATGTTTTTATTTTCTCTTGAGAGTGCCGAGTCTATATGTCTCTGATTTCAATCTGTCTGCTTCATGCCCTAATCCTGAATCATCCTATTGTTGACCTTCACCTTTGTAAAGAATCTACCAATGAATGGACAGATACAATTATTGTAAAAACGTCTTCAAAACGCTTATCTGAGAGTTTTACTATTTTGTGGATCCGGTCTTCTGATTCAGTACCCGGTCAGTACAGCCAGTGGGAGATTTGCACTGTCAGTGTCAATGTATCGATCAGTACAGCCAGTGGGAGATTTGCACTGTCAGTGTATCGTTCAGTGGAATTTATCCACAGACACAACATGCCCAATCCTTCTGGCTTATTATTTGAGTGTTACTCGTTTGAGGTCTTGTCTGAGTTCACTGATTGATCTTGTCATCAGTTGAATGTTGTTGGAATGGTCACCCACATTCTCTTTCTGACGTTACAGTACAAATGGATCAGATTTTTATGATTCattacgtttctttttttgtagaTGTTTTTGTTGTATTTATTCCTGAAAGCTCAGGCCATGTTCTATTTCTGAGAGTAAAAAGAAGACAGGAAGCCGCACCAAACTGTGCTCTTATGACCGTAACCATGTGTTGCTTTTCTCCCTATGTTTTTCTGTTTGCTGGACTAGGCTCCATCATGCGCTGTGCTCCACGTCATgactgctgtgtgtatgtgtagctctgtctgtctgtctgtcgtgcaCTTTTAATCATGATGATGATTTTATAAAAGTCCTCTTCACGCCAGGTTCAACTGGGAGGAAACTTGGCGTGTGTTCTCTGCAGTTTTTACAAATATTTTAACAGTACCCTTTGCATATTGTTTTCAGCTTTTCTTAGTGTCTTTCATTCTGTTTGGGTTTAGTGTATTTACACATGGCTGTGCAGTCTGACACAATGGCCCAACTCCCGACTAAAATGAAGTCATTCTGTTGATGAACCCATAACGGAACATTTCAGAGAATGTTCTGGGTCTAGAACAGAGTGGCTTCTCGTTCTAGAACAGAGTGGCGTCTAGTTCTAGAACAGAGTATATTCTGGGTCTAGAACTCAGTGGCTTCTAGTTCTAGAACAGAGTAGATTCTAGTTCTAGAACAGACTAGATTCTAGTTCTAGAACAGAGTAGATTCTAGTTCTAGAACAGAGTAGGTACTAGTTCTAGAACAGAGTATGTTCTGGGTCTAGAACTCAGTAGCTTCTAGTTCTAGAACAGAGTAGATTCTAGTTCTAGAACAGAGTATGTCCTGGGTCTAGAACAGAGTGGCGCCTAGTTCTAGAACAGAGTGGCGCCTAGTTCTAGAACAGGTTGGTGTCTAGTTCTGGAACTCTTGGCTTAGACATACAGTAGCATATGACATAAGCCAGAGCCACTTTTCTGCTCAAGTGGTTTTGGAATAAATGGCTCCTGCTCAAGTGGTTTTGGCCATGTATTccaaaattattttatttaattccATGTGTTCCAATTCCCtgatgttttattttttgtttaacctttatttaactaggcaagtcagttaagaacaaagtcttattttcaatgacggccttggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggacttgaacttgcaacctttcggttactagtccaacgctcgaaccactaggctaccctgccgccccgtcaTATCATACACGTGCCTTTTGGATTTTAATTTGGCTTGCAGCTATCCAAATATATAACGATAAAATAAGCATTTCAAAAGAGGATGTCTCTGGAAAGTCTTTTTTCATGTACCATGAGTTTCAACTGCTGTTCAAATAACTGTATGTGAGGGAAATGTATTGTTTGTTTTATAAATCatactgttgttttttttatattttaaatcAAAAGATCTTTGTAAATGACCCTAACTTGGAAGGCTGTGCTTTGAATACAACTAATTAGAGAAAGTAGTATTTTATTGAACAGATCCATTGAGTTTTTTGCCTTtgctaaaaaatgtattaaagtaATATGAGAACTG

Function

GO: NA

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393273 lncRNA upstream 5218 36133497 ~ 36133739 (+) True G347604
TU392881 lncRNA upstream 8050 36130449 ~ 36130907 (+) True G347236
TU392872 lncRNA upstream 10011 36126194 ~ 36128946 (+) True G347233
TU392871 lncRNA upstream 10875 36125408 ~ 36128082 (+) False G347233
TU393309 lncRNA downstream 1396 36159721 ~ 36160047 (+) True G347619
TU393332 lncRNA downstream 1884 36160209 ~ 36160984 (+) True G347636
TU393334 lncRNA downstream 3160 36161485 ~ 36162002 (+) True G347637
TU393335 lncRNA downstream 4265 36162590 ~ 36164282 (+) True G347638
TU393336 lncRNA downstream 6083 36164408 ~ 36165155 (+) True G347639
XM_021601019.2 mRNA upstream 15595 36039096 ~ 36123362 (+) False LOC110522562
XR_005051526.1 mRNA upstream 254717 35883168 ~ 35884240 (+) False LOC118964470
XM_021601012.2 mRNA upstream 319649 35803953 ~ 35819308 (+) False LOC110522558
XR_002473342.2 mRNA downstream 880230 37038555 ~ 37040052 (+) True LOC110522575
XM_036976210.1 mRNA downstream 994699 37153024 ~ 37167042 (+) True snw1
XM_036976211.1 mRNA downstream 1029685 37188010 ~ 37226273 (+) True LOC110517371
XM_021601024.2 mRNA downstream 1112848 37271173 ~ 37283482 (+) True LOC110522567
XM_021601026.2 mRNA downstream 1125936 37284261 ~ 37402023 (+) False LOC110522568
TU392876 other upstream 66001 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 230506 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 305113 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 1064619 35073939 ~ 35074338 (+) True G346334
TU391730 other upstream 1316775 34820442 ~ 34822182 (+) True LOC110522546
TU393877 other downstream 1001769 37160094 ~ 37161123 (+) True G348133
TU394044 other downstream 1287142 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 2246320 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 2273854 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 2732058 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile