RNA id: XM_021601026.2


Basic Information

Item Value
RNA id XM_021601026.2
length 8246
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110522568
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37284261 ~ 37402023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGCCGTGACATCCATTGCGTGGAGCAGGCACGATCAGGCCTGCCTCTTGATTGGCTGTCTTGATCGAGAGCTTCTTGAACCTTTTCAAACCAGAGTAAGCACTACAGTGAAACAGTGAAGGACCGTGCTAATTCCCAGCGAGCTCCGGTATTCACTCTGCTGCGGGTGCAGGCGCTCACCACTTCGGGGAAATAGGCTTATTTTTTAAAGAGCTCGAGCACTGTGTCGGTTGTAAAAGCCATTCGTTTCTGTTGTCTCGGAAATGCAACATGCGGCAATAGTAAATAGAGTGCTATTAATTCGTTTTTTATAAAAACGTTTCCAAACGCATATTTATTTTCGATTTGAAGCAGAATTGTTAATCATTTTTGATGATTTCTTTCATACGTGCATAACAGGATTTTCACATGCAACGTTGGAATGCGGAGGATTCCTCTGACAGTTCTCAGCGCGAGGGATACGTGATGGAGCTTTGATCGGTAAACATCCACTTGTTTTTTTGTCGGGATGTTACCAATATTTACACGTTATAGACACGATTTATGAACAAATGCAAAGATAAAGAATAATTGCAAATACCAAGCGCGAGTAATTTTTTCGAACGACAGGTGAGGGTGTACTGCATGTTGCCACTTCTGAATGGTTGACGTAGACAACATCGCATTTTCATTTGATTCATTCAACTTTTTGATCCGAGGTGCCACCTTTATTTCCGTATCATGTATTCACATTTCAATACAATTCCGCAATTGAGACTCGGTTAGTTTAGCCTAAACATCCAGCTTACTGACCTCCTGTTATATCTGACCGAGGAGAAAGCACAGACCGCGCTGGGAGACATGGCTAAAAACCTGCCGGAGGGACCCAAGGAGCCAGACCTGAATCAGCTACCGGATGAAGAGCTGCTGCGATGCGGCAAGGAGGAGCTGGTCAAGCGCCTACGGAGGCTGGACAACGAGAAGATGAACCTAATGATCGACCACGGCAACATGATGAAAGACGTTAACCGGAGGCTGCAGGTGCACCTGCACGAGATCCGCAACCTGAAGGAGATCAACCAGAAGCTCCAGGATGACAACAACGAGCTGCGCGAGCTCTGCTGCTTCCTGGATGACGACCGGCAGAAGGGCAAGAAGCTGTCCCGGGAGTGGCAACGGTTTGGCCGGTACTCCGCAAGTGCCATGTGGAAGGAGGTGGGTACCTACCAGCTAAAGCTCAAAGAGCTCGAGACCAACCAGGAGAGGGTGGTGCGGGAGAACATGGACCTGAAGGAGATCATCCTCATGCTGGATGAGGAGAGGAACGGAGTCGGTTCCCGGAGCTCCATAGACTCCCAGTCCAGCCTCACCAACCTGAATGGCGGGACTGGGACAGTTCGGGATGTCGGGGATGGCAGTAGTACCTCCAGCACTGGGAGCGCAGGTAGTCCcgaccaccaccacaaccacaacagcCACAACCACATACACAAGCTGCCCGCGGAAAGGGAGGGCAAGCTGGGAGGCACCTTCCAGAGGAGGTCCATGGATGACCTGTCAGCACCACACCATCACAGGAGCATCCCTAATGGACTCTGTGactcctcctcctctaactacATCAGACAGCTGGAGATCAAGATGAGGATATTGGAAGACGACAACAACAAGCTTTTAACTCAGTGTAACCCAGGGGACCTGCGTGTCCTGAGGAAGGGGATGACCCTGTACCACTCTGAGTCTCAGCTGTCATCCCTGCCACGACGCCAAGATGCACTGCACAacggCACGGTTGGTCGCCTCCCCACCAGTGAGTCAACCCCGGTAACAGGCTACCTGCCCTGTGTTCAGAAACAAGAGTCTGTGGTCCACGCTATGAAGGTGTTGGAGGTGCATGAGAACCTGGATAAGAAGCAGGGCCCAGAGGACTACGAGGAGGATCTGAGTGAGAAGGAGAAGGCCATCGTCAGAGAGATGTGTAATGTGGTGTGGAGAAAGCTGGGCGACGCAGCAGGAGCTAAGCCGTCCATCAGACAGCATCTCTCTGGCAACCAGTTCAAAGGCCCTCTGTAGTCCACAGCAACCAGAGAGGAAGACTAACTATGCTCACCTGACACCACCTCCACTCCTACTGCTTACACTACTCATAACACCCTGCTCCCACTACAGTTCCCATCACCCACTATTCCCCTGGGATATggcttttgtccagatgggatgcagcttttgtcaaaattgactttttgtagcaggttagAACCTCCGCAGCAGGATAATTTAACGTAGCATGTTAGGAGAATTATGTTtaggttagctaaaatgcaacaAATCCACTTTTGGCGTTAATTTGACAAACTGTATCCCTTCTAGATATGACCTGGTATATGTGACTGGACATTATAGGACCCAGGAAAGGCACAGAATGGATATCTGTCTCTCACCTCGCCAACTCACcatacatacatttattttgaacTTGTTGATAACGTGTTGATAACGGGCAGCTACTTTCACTGATTTGCCATGTTCCTCCTATCATTGATTTGGGGATAGACAGTTTACATAGATACATACAAGATGATTTCATCATCTTCTCCTGGGCCTGGTTTCCCGATAGAGATGGAACTTCGGCTTACGACTGTTTCAACCATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATGCGTCTTTCCTACAAAGGCCCAAGATGTAACATGCGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAGCATATGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATGCGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATGTGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACATACGTCTTTCCTACAAAGGCCCAAGATGTAACGTGTCTTTCCTACAAAGGCCCAAGAtgtaacatgtgtttcccaaaaCGCCACACAGAGGGAACATTCGCTAAGTGCCTTCGTTGGAGCATGTTTCACACGGCAGTAGGATCGAACGATAGGCAtcgctgctctcggatcagctttctTCCATTCAAATCTCACCTTAACATTggaattattccacaatactgacgaTGGATCAGCTACCTAGAGAGACTGCAAATATTGAGGCGGCTTAATCTAATGCCTACCCTATAATAAGGAGTTTTATCAAGATGTGGAACATCACTGTGCACatgttaggctacacatcatTAGATATGAGGCACAAATTGCAGACAGGAGCCAAATAGTAAAATAAAATCTAAATTGAATGAACATGAAATTGCTTTCAGTATCGTCGAAATacaatatatagtatattctGTAGGTGGGCTATTTATCTGTTAATGCAGTATGTCTCATTTCATTTGAAGCATATTTTTTTCCTTCACTTGTTTGTATTAATTGCAgagacattggcaactttgtatttgtacTCAACTTGGTTCTGAAGTTTTCGGCGGTCACACAGAGAGACGGATAAACATCTTGATTCTTTGTTTAGTGGAGTTtttctgtgtataaagtgacgcGGTCGGTATCTAACGATGTACTTTGCTGTTCACACGCCAAGCAGTCTGATGCAGTCAGTAAATAACAAGCGGTTTTCAAGTACAATTTTAGTAACgttggttttgggaaacagctcttgagatttaacgatgctcctaCGAAGTTACTAACGATGCCTTTAGATGCTCTTGGGAACTTGGGCCCTTTTGTATTGTTTGATGCTGAATAGAAACCCAGATGAGCTCTATAAGAAGTTCCCTAGAATAGGACCAGTGTCACTGTAAACCAGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAAGTAAAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCATGGTTACCATAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAACTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGGGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGGGCTTTAGGTAGAGCTGCACGGTTACTATAGTAGAGCTTCAGGTAGAGCTGCATGGTTACTGTAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGTAGAGCTGCATGGTTACTATAGCAGAGCTTCAGGCCCAGGGGAACATgtgagattaaaaaaaaaatccccaaacGTCCCCAAAAGTAACGATGTGATAACATCAGATATGGTTAGATAGTACGTTTTGGGTTACAAGTGTCTCGtatgcacagatctaggatcagcttcactCTCCTTCAACCCCGATCTTGAGCATTTAGAGGTCACATACAGAACTGACTGTGGATCAGTGTCTAGGAACAATGTCATCCCACTCCTTCATAGTACTTCCCATAAAAAAACAGTTAGCTTCTCTGTCAGTTTTGTCTCTCTGGTTGATTAGCATAATTAGCATTAGCTAATGCTAGCATTAGAATAATTATCATTAGCGTCCAAAGTGTTAATTTGTGTTACCCACTGTGACGTACATACCTAGCGCCCTGTGCTCATAAGAGATGTCTATTATTAACACAAAACTATAGAGATCACTTTTAAAAACCTGTGTAAAATATGTATAAAGACATAGCATTATTGTTTATCGTTTATTTAGACTTTTTGTTTGTTATTATTCTAGGTTGACCATGTGATGAAATTGACTGTTTTATGGGTTTTATGTTTTACAAAAGCACTCAGTCGAACCGTAAATAGGGCTGTTTCTATGGTAACCACTCATTTGTTTACTGTATTTTGGtttaacaaattattattttatctCTTCAAACGCATCAAGGCCATTTGGAATCGAAACTGCCTCAGCCAAGAGTCAATGGAGCGATCTTATTTTTTagaggaaaatgttttaaaaaaatgttttaactaaAATGGACACCGTTGTGTAAGACAATCATATTTCTCAGGTTGGGAAATAACGGAGAGCTTTACCCCAACTCTTCATCTGTGACTCTGAAGACAGGATGGTTTGTAGTCTTTCTTTCTGTTGGTCaggctgtatactgtagttcTCTGTAAACGGACTGAGGACACCTGCTTCATACAGGGCTGGAGACTGCGGAACACATTTGCTTGCATTCATTTCGTATTAAATAATGTTTCAGAAATATTCTGTGAAATTTAAAAAGGCTTTCATGCTTCTGTCATAAAGGGAAGATCAGACTAATTTGGCTATCTACTGTAATAACTACTAATCAAACTAGTGTACAACACCATTTTTATTGAAAGCtacaaaataaatggaatggtttaTATTTTTTCAATTAGCATAATATTAATTACGCTTTTTAGCCATGGTGAATCCAGGAGATGAGTTTCAGCAGTGAACTGTGCATGTTTTGTAAAAGTATTTTCTGTTGGAATGTGAGAAAGAGCAAGTCTTCCCTTAGATGTTTTTCGATACATTTTAACGAGTTATTCCTTGACGAAGTCAGATGAAATAAGTACTGTTATGATCAAACTGTTCATTGCCATGTGTTTAGATAAGAGCTCTCCCATTATAGGGCTGCCATGTTATTGGCCCGTTTATGATTTTAACCTATCGGGGGATTTTGATTGGTATCCAAGTCTTTTGATTGGGTAATTGGTTAATAAGTCACTGATTGACAGCTCAACCTCTCCTGACACTAGTATTTCTTGTTCCTAATTAGAACATCATTGAGGCTTCAGACTGTACGATCTCACGGTTCTGCCTCGGTTCTCGCTAATGGGGTCTAGTACAAAAAATAAAATCAAAGAATAGAGTTTTTTGAAGTGTCATTTTTTTCTAGAACAACTGATTTGGAGCTATGAGAGGAGATGATTTGGAATATCTTTCAGTCTGGCATTTTGTGCCATGTTTTTCTCTGCACGGGAGTTTGATTTGGAACCTGTGTTTTAAAACAACTTCTGTGTATGTGCTAAACCAGAAGACATGATGAACCTGGTATGCATATGAaatatcaccctattccctagcgCAGGAGTTTCCCAGACTCCAACCCGGGTGCACGGTTTGATGTTTACTGTAGCACTACACAGTtcgattcaaataaccaactcatcatcaattatttgaatcagctgtgtagtgctatggcaaaaaccaaaacgtgtacCAGGGTGGGCCccgggaccgagtttgggaaaccctgccctagtgcattacttttgaccacggCGTTGTGCTTAACctagacaaaagtagtgcactatatagggaacagggtgccatttcagacacaaacCTAGTGTTAGTGCTAACTACTCCTGTAGTTACTAGCATTACTGTAAAGTAAGTGTTTTTTTCATGAATTTAGCTGAGACCAGATAGATACTCTAAAAGGATGAATAAATGTACTAGGCCAGAGATGATTTtgggaagaaaaataaataaactttcTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393918 lncRNA upstream 29359 37254696 ~ 37254902 (+) True G348173
TU393913 lncRNA upstream 35474 37248580 ~ 37248787 (+) True G348168
TU393911 lncRNA upstream 36881 37247044 ~ 37247380 (+) True G348166
TU393910 lncRNA upstream 37772 37246288 ~ 37246489 (+) True G348165
TU393908 lncRNA upstream 38746 37245265 ~ 37245515 (+) True G348163
TU394041 lncRNA downstream 38342 37440365 ~ 37441506 (+) True G348267
TU394039 lncRNA downstream 39035 37441058 ~ 37509205 (+) True G348266
TU394064 lncRNA downstream 87376 37489399 ~ 37489902 (+) True G348287
TU394045 lncRNA downstream 95318 37497341 ~ 37497818 (+) False LOC110522576
TU394043 lncRNA downstream 98126 37500149 ~ 37501852 (+) True LOC110522576
XM_021601024.2 mRNA upstream 779 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 57988 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 117219 37153024 ~ 37167042 (+) True snw1
XR_002473342.2 mRNA upstream 244209 37038555 ~ 37040052 (+) True LOC110522575
XM_036976196.1 mRNA upstream 1125936 36138957 ~ 36158325 (+) True LOC110522563
XM_036976216.1 mRNA downstream 43345 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA downstream 57985 37460008 ~ 37501952 (+) False LOC110522576
XR_002473341.2 mRNA downstream 120786 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 445956 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 468729 37870752 ~ 37878518 (+) False actc1a
TU393877 other upstream 123138 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1211305 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1375810 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1450417 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2209923 35073939 ~ 35074338 (+) True G346334
TU394044 other downstream 43444 37445467 ~ 37497006 (+) False LOC110522576
TU395886 other downstream 1002622 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 1030156 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1488360 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1488360 38890383 ~ 38896021 (+) False LOC110522591

Expression Profile