RNA id: XM_036976216.1


Basic Information

Item Value
RNA id XM_036976216.1
length 6117
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110522576
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37445368 ~ 37501952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGATGTCTCTCTCAGCGTGGACGCAACGTCACGTCCGCACTTGAATCTGAAGTCTTATCCCATTCTACGGAGGCAatcccagccacacacacacgcgggaTTCTCCCAAAGCGACAGGACAGACTCGTCACTGTGAAAGGAGAAAGAGACATCAGGAAACATTGGACCTCGGCTGTTTGGAAGGAGAAAAATAGGAggtgtctgactggctggctgttagtctgtctccgtctccctctgtcaACTCCTAGAGCGGAGAGTTCTGTGCCATTCCTTTCGCTACTCGCACCGCGAGGACTGAATGGTGTCAAAGCTCACAGCACCTGGCAGACCCAACACCGGTGGAATTTTTGGGGTTCAGTTATTGAATTAATAGGACATTTGTTGTAATTCTGCAAGAAAATAACAGAGGAGAAGAGGTGACAGTTGAATCGAATATTGGCCCATCGAGCGAAGAGTGGCATGCACGGTAGGCTACCCCAGTAGTGAacgcagagggcagagggcaccTCGTCGGAATTCAAATTGTTTTTATTCTCTGCAATTATTGCAATAATTCCGTTGAGGTTATTGACACAAAATAACCGAACAGAAATATTTGCATGAACCTGCATGTGTCTGATGTAACTCCAACAGTTtaacccctccaggtgttgcgCTTAGGGTGAAATAATTCTGCGAGGACTGGACAGTTGACAAACGTTTTACCCGCCTTTCAACaactacaataaaaaaaaaacacttggcTCTTTTTCACTTACTGTAGCTTCATGTTAGTCGTCTCAATTGGAAGCACTTTGAAAAAGTTACCGGGCACTAGACCAGCGGAGCACCACGGAGCAAGCCGAACCCACGCGCAGTTTTCCGGGCGATGCCAGAGTAGATGCAGGGGCAATGTCCCGTCGCAAGCAGGAGAACCCTCAGCACCTACCACTGTCTCAAAGAGAAACAATACGACCCGAGGCCAATCTTGAGTCGGGGGTGGGAACTCGCCCCCCGGAGCCATCCACTCCCAGCCTCACTCCCACTCTGAGAAGGGCAGGGCCAGGGGAGCATGACCTCCTGACCTGTGGGAGGTGCCAGACCAACTTCCTCCTGGGAGACATCCTGGTCTTCATAGAACACAAAAGGAGACTGTGCAGTGGAGGAGTCCGCGCCCCTGGGGGGTTCTCCAAACCGGGCCAGAGGGGGACCCCCATCTTGGCACGAGGAGGGGCGGTGCCAGTGGAGGTGGGGGTGCAGGTGACCCCACATGGggatgaagaagaggagaggaggctgacGCCCGCTAAAGGAATCTGTCCCAAGCAGGAAAGAGGGGGCACAGgtAAAGATGAGCCATCCAGCTACATCTGCACCTCCTGTAAACAGACCTTCACCAGCGCCTGGTTCCTGCTCCAGCACGCCCAACACACACATGGCATTAGAATCTACCTGGACACACACCCCTCCAACTACACCCTCACCCCTCGCATGGCCCTCCCCCCTCCCATGGGTGGGGGAGACTCCCTGCCCCGTTCTCCCTTACCAACGTTTCTAGGGGACACCTCCAACCCCTTTCACCTCCTCCGGATGGCGGCTCCACTACTCAGGGAGTATCAccgaccccaccaccaccacccccacccccatccaCCTCCGGCGTATCTTGACACCCGGCTCCCCGCCACCCCACCCTTCGTCAGCCCCCCGCCCCCCAGACATCCCCTTGAACGCCTGGGTCCAGAGGAGATGGGGTCCCTGCTCTCCCAGCACCCCAGTGCCTTCGAGAGGGTGATGCGTCTGACCCCAATGGAACCTCCTTCCATGGACTTTTCCAGAAGGCTCAGAGAGCTGGCGGTTGGCAACAATAGTAACAACGGAGGCCCCACACCCCCTCTCTCGCCCACCCGGGTGCCCCCCATGCACCGCCTGCTGAGTCCAACCCTCTTCCAGCCAGGCTCCAAGCACCCACCGTTCCTCACCTACCCCCCACAGCCCCCAACGCCTCAGGGAGACCCATCCACTACTCCCCAGGGCCAGAACCAAGCCCAGgtcCAGGCCCAAGCCAAGTCCAAGTCCTGTGAGTTCTGTGGGAAGACCTTCAAGTTCCAGAGCAACCTGATAGTCCACAGACGGagtcacacaggagagaggcccTACAAATGTCATCTGTGTGCCCATGCCTGTTCTCAAGCCTCCAAGCTGAAGAGACACAtgaagacacacatacacaagtcaGGCTCCATGGGGAGCTCCCCTGAAcaggggaacagaggagagggaggagagggggaggggaagagcagagagggggagggaaaaatGGGGATGGAcaacgaggaggaggaagaggaggaggaagaggaagaagaggaggatgaaatggaggatgaggaggagatgaggaacgGCCTAAGTAGGCCTGAGTCTAACCTGACCATGGACTCAGAGTTCCACAGGAACATGGAAAACGGGTTGAGGCCTTCCCCAGACGAGAAGCCTCATGGTggggatagagtgatggagaacGGAGGGGTGGGTATCATGCACCCATATAACCACCTGGACAATCACCTGAGACTGGCCCCTTCCAAGCGGACCATGAGTCTGGACAGGGAGAGGCATCCTAATGGAGAGTCGGGAGAAGGAGGAGATGCtgggaggggggagatggagagagagagggacagagagcgagcgatggACAGagcgatggacagagagagagaaagtggaagagaggagaggccctTGATGAACGGAAGGATTAGTGGGTCAGAAGACTCCTTCACTGGTCTGTTCCACCGCCGGCCCACCCCCATCACCTGCCCCAACCCCTCCAACAAGAGAATCAAGgtggagaaggagttGGAGCTCCCTCCAGCGCCGACCCTCATCTCCCCAGAGAACATGTACTCCCAGCTCCTGGCGGGCTACGCAGCTTCACGCCACTTCATCAGAGAACCCTTCCTCCACGGCTTCAGTGACACACACCAGTCCCCCTTCGCCACCTCCTCAGAGCACTCCTCCTCCGAGACGGGTTCCCTCCGCTTTTCCACCCCTCCTGGGGAGTTCCTGGAGGGCAGCTCCACCCCTCACCTCCTGCGGGGTCCCGGACCGGGTCGACCCCCTAGTAAGGAGAGCCGACGGAGCGACACCTGTGAGTACTGCGGGAAGATATTCAAGAACTGCAGCAACCTGACGGTGCACCGACGTAGCCACACGGGAGAGAGGCCCTACAAGTGTGACCTGTGCAGCTACGCCTGCGCACAGAGCTCCAAGCTAACTCGCCACATGAAGACCCACGGGCAGTTTGGGAAGGAGGTGTACCGCTGTGACATCTGCCACATGCCCTTCAGCGTCTACAGCACCCTGGAGAAACACATGAAGAAGTGGCACGGGGAACACTTGATGGCCAGCGACGTCAAActggaggaggctgagagaggctaggTTACGCTAGGCTAAAGCTTAAGGCTacaggctaggctaggctaacaCAACAGACTCCTTCTGAATGAACACTTACAGGACTTCAACACGGGGTTTGGCTGGATAATCTTTGTCCTCTTGAATATTTTGGGACAATTTGATGTATGTTATTCTGTTTTTGTTGGTTGTATTTGTCACAGAAACTGCCACCTGAGAAACATAAACAAAGGGAAACATGGAATGGGGGATTGTTCTAGAAACGCTTTGTTTCCCGCCAACTATTGATCTATCTGAGGATTTTATCATTTAGGAATCCCTGGAGCTTTTCTACTGTGCAATAATGTCTGTATTTATTGGAGTTTTGTAAAGATGTTGGGCATGCGCAGTAAAACAAAATCCATAACTGGAAACAGGTCACACTTGATTAGAAATATGATTTGAATTGTTACCTGACTAAATTAATGCGAAGAGGTCAACTTCTAAAAATTATGAtagcaattatttatttttaaactgtCTCATTGTTACCCTTTTAGGTCAACAGCGGACTACAATCCATCTGCTTGTATGTGACATAGAGCACTGAATGTCAATATGACAATAAAATATTAATTATCATTTTagaataaaattttaaaaatctGAAGAGGTTACAGACAATTTTATACAAACAAAATGATACTTTTTTTATAGATATCAGCATGTGTTATACAATGTCTAAATGCAATTATCATAATGATGTAATCCAGCCGTATGTTCCCAATATGAGCAGGGGATGTAAATAGCAGCTGCACACATTGACTAGCATTCCTTAGATGCGGGATTAAATCGCCATAGGATATTTAACATACATCAGCTAATTTACTGTAGCAACTGTGAAATGGAGAACAGTTATACGTTTATTTGTGGATGTTTTGGGAGGCCCTTTTTTTACTCTTCAAACACCATCTAAATATTTGTTTTTCTTCGATCTATAATACCAGCCCTGTATTTTACATCCAGAATGGCCACTATAAACCAATCAAAAGACTAGCTGCTTGAGTTGTCTACGTACTGAATAATATagctacatttttttattttaccagatgattgcaatacaggtCCTCTCAATAGTGCTTCCTTCCTATggtcatactgtttacatttGAACAACATAGTGGCAAGGTCGTTACTCCCTCTTGACACTTGCTGAAGCTTAATCAAAGGCAATCAGTGAAGTTAAACTTTTAAACATTCTACATCGTACAGTACATTCCACTTCTAGAATCCTTCCATTGTTCCGTCTGGGGGGATTCCAGAACAGTAATGTTCCGTTTGACCTGGGTGAGTTCTTATCCCCTCAGGATTCAGTAAAACCAGTATCAAAATGTATTTCATATCAATGCCTGTGTTTCTCCACTGTGTGCTCTAAGCCACAATCCGCCTGCCTGCTTTCACACTTCACTAACTCAACACTCATGTATTAGTAGAGCAGCTGTGAAAGGAAAAGGTAGAGGTTGTTAATGTTGCTTCTCAAAGTGATATGGGGGTTTAACGCCCAATAACAGATTTACAATTTGGGATTTTAAGCTGTGAGGAATGAGGATGTCTCATCCTGGGAACAGTCTAAAAAAAGGCTTTTGAGTTACATTGAATTATGTTAATAATGTCCAGCACAGCTGTTAGGATGATGGCCACACGACCTTGAGATCTGATTGGATCATTCTTGAGGTAGAACAAGGAAGACTGaaatagagatgagagagagggagagagagagggaaagaaagaaagagagaaatagagggaacgagagagagagagagatccgcGCAAGGATGAAAGTAATTCAAACAAAATGTAAGGCATATGAAAAGTGTTTTTAACCCCAAATGCATATCTGCTTGTCAAATCTAATACCAgtgacatcagagagagagaaaggaccaATATTAGGGAAGATTTAGGCCACATCAATCAGAATAATGTTTACAGTGTTTGAAGTACGTTAATGATGAAATCCTCTGTGTTTTAAAAATAACAAAGTATTCTTTTCTTCAATGTTTTGAATGCCATAGCGAGCAGTTTTCTATGATTATCATGGTGGAGGGATTTTAAAATAGATTCTTATGACTAGTTATAAGTATAATTTCTTGCTCGCTGTATAACAATACCCAGTGTATTATATTGATAAATGATGCAGCATTTTGTTTTTTAAGTGGTGCCAACATTATGTTATAACCTATTTTCACAGTCTGAATCCAATTGTGAGTCTATTCAAACGGTGTTGATTTTTGTCGATGTTTAAAatagttttttgttttgttggtaAAGCTATCCTAAAATGTATATTAAAAATTACAATAACAAAAATTTTGAAAATGTTTTGAAGTCATCCAGAACATCAGAGGAATTTTGAGACTGGGATTTTACAATGGGTTCTGGGAGAAATGCTTTTCATAAAACGTATATTAGGAGACATTCCTGGTTGGTAGAAGTTCTTGTGATGGCACTTCACGTGACATTTTAACACATTTTCAACTTTCACGACTTTTgctctttgtaaaaaaaaatatttttcttgtttttttgatGGACTGCATTATTGTTTCAAAGCAGCAGTAACGTTACAAATCAGCTGttttaaatatatatgtatttttgtaaTGTGCTGAAAAGAAAGTCACCAAGTCCAATAAAAGTTTCATTTGCCCTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394041 lncRNA upstream 3862 37440365 ~ 37441506 (+) True G348267
TU393952 lncRNA upstream 16377 37356164 ~ 37428991 (+) True G348193
TU393968 lncRNA upstream 80842 37312310 ~ 37364526 (+) True G348206
TU394001 lncRNA upstream 82844 37361581 ~ 37362524 (+) True G348234
TU393999 lncRNA upstream 85590 37359431 ~ 37359778 (+) True G348232
TU394070 lncRNA downstream 13879 37515831 ~ 37516214 (+) True G348293
TU394072 lncRNA downstream 15926 37517878 ~ 37518424 (+) True G348295
TU394079 lncRNA downstream 29210 37531162 ~ 37531455 (+) True G348302
TU394085 lncRNA downstream 44194 37546146 ~ 37546352 (+) True G348308
TU394100 lncRNA downstream 68889 37570841 ~ 37571226 (+) True G348320
XM_021601026.2 mRNA upstream 43345 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 43345 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 161886 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 219095 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 278326 37153024 ~ 37167042 (+) True snw1
XR_002473341.2 mRNA downstream 20857 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 346027 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 368800 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 370312 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 377450 37879402 ~ 37897524 (+) True LOC110521098
TU393877 other upstream 284245 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1372412 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1536917 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1611524 35833369 ~ 35833844 (+) True G347151
TU391880 other upstream 2371030 35073939 ~ 35074338 (+) True G346334
TU395886 other downstream 902693 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 930227 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1388431 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1388431 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1392191 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile