RNA id: TU394043


Basic Information

Item Value
RNA id TU394043
length 1603
lncRNA type sense_over
GC content 0.35
exon number 3
gene id LOC110522576
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37445368 ~ 37501952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTATTTGTGGATGTTTTGGGAGGCCCTTTTTTTACTCTTCAAACACCATCTAAATATTTGTTTTTCTTCGATCTATAATACCAGCCCTGTATTTTACATCCAGAATGGCCACTATAAACCAATCAAAAGACTAGCTGCTTGAGTTGTCTACGTACTGAATAATATagctacatttttttattttaccagatgattgcaatacaggtCCTCTCAATAGTGCTTCCTTCCTATggtcatactgtttacatttGAACAACATAGTGGCAAGGTCGTTACTCCCTCTTGACACTTGCTGAAGCTTAATCAAAGGCAATCAGTGAAGTTAAACTTTTAAACATTCTAGAACAGTAATGTTCCGTTTGACCTGGGTGAGTTCTTATCCCCTCAGGATTCAGTAAAACCAGTATCAAAATGTATTTCATATCAATGCCTGTGTTTCTCCACTGTGTGCTCTAAGCCACAATCCGCCTGCCTGCTTTCACACTTCACTAACTCAACACTCATGTATTAGTAGAGCAGCTGTGAAAGGAAAAGGTAGAGGTTGTTAATGTTGCTTCTCAAAGTGATATGGGGGTTTAACGCCCAATAACAGATTTACAATTTGGGATTTTAAGCTGTGAGGAATGAGGATGTCTCATCCTGGGAACAGTCTAAAAAAAGGCTTTTGAGTTACATTGAATTATGTTAATAATGTCCAGCACAGCTGTTAGGATGATGGCCACACGACCTTGAGATCTGATTGGATCATTCTTGAGGTAGAACAAGGAAGACTGaaatagagatgagagagagggagagagagagagagatccgcGCAAGGATGAAAGTAATTCAAACAAAATGTAAGGCATATGAAAAGTGTTTTTAACCCCAAATGCATATCTGCTTGTCAAATCTAATACCAgtgacatcagagagagagaaaggaccaATATTAGGGAAGATTTAGGCCACATCAATCAGAATAATGTTTACAGTGTTTGAAGTACGTTAATGATGAAATCCTCTGTGTTTTAAAAATAACAAAGTATTCTTTTCTTCAATGTTTTGAATGCCATAGCGAGCAGTTTTCTATGATTATCATGGTGGAGGGATTTTAAAATAGATTCTTATGACTAGTTATAAGTATAATTTCTTGCTCGCTGTATAACAATACCCAGTGTATTATATTGATAAATGATGCAGCATTTTGTTTTTTAAGTGGTGCCAACATTATGTTATAACCTATTTTCACAGTCTGAATCCAATTGTGAGTCTATTCAAACGGTGTTGATTTTTGTCGATGTTTAAAatagttttttgttttgttggtaAAGCTATCCTAAAATGTATATTAAAAATTACAATAACAAAAATTTTGAAAATGTTTTGAAGTCATCCAGAACATCAGAGGAATTTTGAGACTGGGATTTTACAATGGGTTCTGGGAGAAATGCTTTTCATAAAACGTATATTAGGAGACATTCCTGGTTGGTAGAAGTTCTTGTGATGGCACTTCACGTGACATTTTAACACATTTTCAACTTTCACGACTTTTgctctttgtaaaaaaaaatatttttcttgtttttttgatGGACTGCATTATTGTTTCAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394045 lncRNA upstream 2331 37497341 ~ 37497818 (+) False LOC110522576
TU394064 lncRNA upstream 10247 37489399 ~ 37489902 (+) True G348287
TU394041 lncRNA upstream 58643 37440365 ~ 37441506 (+) True G348267
TU393952 lncRNA upstream 71158 37356164 ~ 37428991 (+) True G348193
TU394070 lncRNA downstream 13979 37515831 ~ 37516214 (+) True G348293
TU394072 lncRNA downstream 16026 37517878 ~ 37518424 (+) True G348295
TU394079 lncRNA downstream 29310 37531162 ~ 37531455 (+) True G348302
TU394085 lncRNA downstream 44294 37546146 ~ 37546352 (+) True G348308
TU394100 lncRNA downstream 68989 37570841 ~ 37571226 (+) True G348320
XM_021601026.2 mRNA upstream 98126 37284261 ~ 37402023 (+) False LOC110522568
XM_021601025.2 mRNA upstream 98126 37284262 ~ 37402023 (+) True LOC110522568
XM_021601024.2 mRNA upstream 216667 37271173 ~ 37283482 (+) True LOC110522567
XM_036976211.1 mRNA upstream 273876 37188010 ~ 37226273 (+) True LOC110517371
XM_036976210.1 mRNA upstream 333107 37153024 ~ 37167042 (+) True snw1
XR_002473341.2 mRNA downstream 20957 37522809 ~ 37524068 (+) True LOC110522574
XR_005051527.1 mRNA downstream 346127 37847979 ~ 37855029 (+) True LOC118964471
XM_036976220.1 mRNA downstream 368900 37870752 ~ 37878518 (+) False actc1a
XM_036976221.1 mRNA downstream 370412 37872264 ~ 37878518 (+) True actc1a
XM_036976480.1 mRNA downstream 377550 37879402 ~ 37897524 (+) True LOC110521098
TU394044 other upstream 3143 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 339026 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1427193 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1591698 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 1666305 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 902793 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 930327 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1388531 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1388531 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1392291 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile