RNA id: XM_036976220.1


Basic Information

Item Value
RNA id XM_036976220.1
length 1601
RNA type mRNA
GC content 0.54
exon number 8
gene id actc1a
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 37870752 ~ 37878518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATTTCCTTATTTTTCTACCAGTCGGACACccaggcagtcaggcagtcagagGCGGTACTAGAACCCTCCGTCTCCTAGGTAACAACACTCTGTTTTAGATGGCGTCCCGTCAGGAAGGAGGCCTCTGAGTGACACAGGATAGACTTTTTCTAGTGAACCGTTATCTAGAAGTTCTTATTTGGGCTTGTATAAACTCTTGGTCCCGCCTCCAGGCTCCAGGCCGCTGGTCCTGGGACAAGGGGGCATATTTAAGGGACACCTCTCACCCTCATCCTTTATCCCAGTGGAAACTCCAGTCTTGGCGTACAACTTGAAGGTCATCCTAAACAAGACCAATCATGTGTGACGACGATGAGACTACTGCCCTCGTGTGCGACAACGGCTCTGGCCTGGTCAAGGCTGGGTTCGCCGGTGATGACGCTCCCCGCGCTGTGTTCCCATCCATCGTTGGACGCCCCCGTCACCAGGGTGTGATGGTGGGAATGGGACAGAAGGACAGCTATGTGGGAGACGAGGCTCAGAGCAAGAGAGGTATACTGACTCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCTCCTGAGGAGCACCCCACCCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTACGTGGCCATCCAGGCCGTCCTGTCCCTGTACGCCTCCGGTCGTACCACCGGTATTGTCCTGGACTCAGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCGGGTCGCGACCTCACTGACTACCTGATGAAGATCCTGACAGAGCGTGGCTACTCCTTCGTGACCACCGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGAATGAGATGGCCaccgctgcctcctcctcctctctggagAAAAGCTATGAGCTGCCTGACGGTCAGGTCATCACCATCGGTAACGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTTATTGGTATGGAGTCCGCTGGTATCCATGAGACCGCCTACAACAGCATCATGAAGTGTGACATTGACATCCGTAAGGACTTGTACGCCAACAACGTCCTGTCAGGAGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACCGCTCTGGCCCCAAGCACCATGAAGATTAAGATCATCGCTCCCCCCGAGCGTAAGTACTCGGTCTGGATCGGCGGCTCCATCCTGGCCTCCCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGACGAGGCAGGCCCCTCCATCGTCCACAGGAAGTGCTTCTAAAACATCCCATCTTCCCACACCTCCTCCATACACATTCACCCTCCTTCTGTTGTTTGCATTTCTACCTTGTCTTGTGCTGTATATACAGTTGTAATAAAATAGTTGTCTTGTAACAATAATCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395224 lncRNA upstream 20175 37850301 ~ 37850577 (+) True G349315
TU395183 lncRNA upstream 49317 37775498 ~ 37821435 (+) True G349275
TU395204 lncRNA upstream 57036 37813187 ~ 37813716 (+) True G349296
TU395194 lncRNA upstream 77177 37792057 ~ 37793575 (+) True G349286
TU395163 lncRNA upstream 106457 37763843 ~ 37764295 (+) True G349263
TU395277 lncRNA downstream 75724 37954242 ~ 37954697 (+) False G349367
TU395279 lncRNA downstream 75724 37954242 ~ 37955404 (+) True G349367
TU395337 lncRNA downstream 141325 38019843 ~ 38020608 (+) True G349404
TU395340 lncRNA downstream 144583 38023101 ~ 38023738 (+) True G349405
TU395353 lncRNA downstream 170212 38048730 ~ 38049008 (+) True G349416
XR_005051527.1 mRNA upstream 15723 37847979 ~ 37855029 (+) True LOC118964471
XR_002473341.2 mRNA upstream 346684 37522809 ~ 37524068 (+) True LOC110522574
XM_036976216.1 mRNA upstream 368800 37445368 ~ 37501952 (+) False LOC110522576
XM_036976217.1 mRNA upstream 368800 37460008 ~ 37501952 (+) False LOC110522576
XM_021601026.2 mRNA upstream 468729 37284261 ~ 37402023 (+) False LOC110522568
XM_036976480.1 mRNA downstream 884 37879402 ~ 37897524 (+) True LOC110521098
XM_021601035.2 mRNA downstream 19118 37897636 ~ 37899208 (+) True LOC110522584
XM_036976224.1 mRNA downstream 91204 37969722 ~ 38234678 (+) True LOC110521100
XM_036976225.1 mRNA downstream 409679 38288197 ~ 38291538 (+) True LOC110522580
XM_036976229.1 mRNA downstream 747698 38626216 ~ 38650472 (+) False thbs1b
TU394044 other upstream 373746 37445467 ~ 37497006 (+) False LOC110522576
TU393877 other upstream 709629 37160094 ~ 37161123 (+) True G348133
TU392876 other upstream 1797796 36039166 ~ 36072956 (+) True LOC110522562
TU392802 other upstream 1962301 35908246 ~ 35908451 (+) True G347178
TU392774 other upstream 2036908 35833369 ~ 35833844 (+) True G347151
TU395886 other downstream 526127 38404645 ~ 38405464 (+) True G349855
TU395908 other downstream 553661 38432179 ~ 38434024 (+) True G349877
TU396266 other downstream 1011865 38890383 ~ 38896021 (+) False LOC110522591
TU396267 other downstream 1011865 38890383 ~ 38896021 (+) False LOC110522591
TU396263 other downstream 1015625 38894143 ~ 38896521 (+) False LOC110522591

Expression Profile