Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036976221.1 |
| length | 1307 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 8 |
| gene id | actc1a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 37870752 ~ 37878518 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0036302 | atrioventricular canal development | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0003272 | endocardial cushion formation | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| id | description |
|---|---|
| K12314 | ACTC1; actin, alpha cardiac muscle |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU395224 | lncRNA | upstream | 21687 | 37850301 ~ 37850577 (+) | True | G349315 |
| TU395183 | lncRNA | upstream | 50829 | 37775498 ~ 37821435 (+) | True | G349275 |
| TU395204 | lncRNA | upstream | 58548 | 37813187 ~ 37813716 (+) | True | G349296 |
| TU395194 | lncRNA | upstream | 78689 | 37792057 ~ 37793575 (+) | True | G349286 |
| TU395163 | lncRNA | upstream | 107969 | 37763843 ~ 37764295 (+) | True | G349263 |
| TU395277 | lncRNA | downstream | 75724 | 37954242 ~ 37954697 (+) | False | G349367 |
| TU395279 | lncRNA | downstream | 75724 | 37954242 ~ 37955404 (+) | True | G349367 |
| TU395337 | lncRNA | downstream | 141325 | 38019843 ~ 38020608 (+) | True | G349404 |
| TU395340 | lncRNA | downstream | 144583 | 38023101 ~ 38023738 (+) | True | G349405 |
| TU395353 | lncRNA | downstream | 170212 | 38048730 ~ 38049008 (+) | True | G349416 |
| XR_005051527.1 | mRNA | upstream | 17235 | 37847979 ~ 37855029 (+) | True | LOC118964471 |
| XR_002473341.2 | mRNA | upstream | 348196 | 37522809 ~ 37524068 (+) | True | LOC110522574 |
| XM_036976216.1 | mRNA | upstream | 370312 | 37445368 ~ 37501952 (+) | False | LOC110522576 |
| XM_036976217.1 | mRNA | upstream | 370312 | 37460008 ~ 37501952 (+) | False | LOC110522576 |
| XM_021601025.2 | mRNA | upstream | 470241 | 37284262 ~ 37402023 (+) | True | LOC110522568 |
| XM_036976480.1 | mRNA | downstream | 884 | 37879402 ~ 37897524 (+) | True | LOC110521098 |
| XM_021601035.2 | mRNA | downstream | 19118 | 37897636 ~ 37899208 (+) | True | LOC110522584 |
| XM_036976224.1 | mRNA | downstream | 91204 | 37969722 ~ 38234678 (+) | True | LOC110521100 |
| XM_036976225.1 | mRNA | downstream | 409679 | 38288197 ~ 38291538 (+) | True | LOC110522580 |
| XM_036976229.1 | mRNA | downstream | 747698 | 38626216 ~ 38650472 (+) | False | thbs1b |
| TU394044 | other | upstream | 375258 | 37445467 ~ 37497006 (+) | False | LOC110522576 |
| TU393877 | other | upstream | 711141 | 37160094 ~ 37161123 (+) | True | G348133 |
| TU392876 | other | upstream | 1799308 | 36039166 ~ 36072956 (+) | True | LOC110522562 |
| TU392802 | other | upstream | 1963813 | 35908246 ~ 35908451 (+) | True | G347178 |
| TU392774 | other | upstream | 2038420 | 35833369 ~ 35833844 (+) | True | G347151 |
| TU395886 | other | downstream | 526127 | 38404645 ~ 38405464 (+) | True | G349855 |
| TU395908 | other | downstream | 553661 | 38432179 ~ 38434024 (+) | True | G349877 |
| TU396266 | other | downstream | 1011865 | 38890383 ~ 38896021 (+) | False | LOC110522591 |
| TU396267 | other | downstream | 1011865 | 38890383 ~ 38896021 (+) | False | LOC110522591 |
| TU396263 | other | downstream | 1015625 | 38894143 ~ 38896521 (+) | False | LOC110522591 |
