RNA id: TCONS_00030457


Basic Information

Item Value
RNA id TCONS_00030457
length 714
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_015158
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3881000 ~ 3894103 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGCAGAAGAGCTGCAGGATACAGTCAACAGTCCAGAGACAACAGAGCTGTTAAACCTGCTTTCCAAACCTCATGTACAGACTCTTCTGTTAGTGCATGATGTGGTGGCGCAGAAAAGGTTTGACCCTCGGTTGCCGCCTCTGCCCCCTTTACCTGATTGCAACGAGGAAGATGAAGATTCAATCAAGATTGTTTGCCTGGTTAAAAACCAAGAGCCACTGGGAGCCACCATAAAGAGAGACGAGTCGTCTGGAGCTATAATCGTGGCTCGGGTCATGagaggaggagctgctgataGAAGTGGTCTGATTCATGAAGGTGACATGCTCAAGGAAGTCAATGGTGTTCCAGTGGAGGACAAAAACCTACAGGAGATCATCCCAATACTGGCCAAGTCAGAAGGAGCGGTGACCTTTAAAGTCGTCCCAGGCACCAATGAAGAGCTGGAGACGAACGACACCCAGGTCTTCGTGAGAGCCCTTTTTGACTATGATCCCCAAGCAGATCCTGCTATTCCATGCAGAGACGCTGGGTTGGAGTTCCAGAGAGGAGATGTTTTGCAGATTGTGAGCCAAGATGATGACACCTGGTGGCAGGCCAGACGGCACGGAGACGCCAACCTCAGGGCCGGACTCATTCCCTCAAGACAGCTTCAGGAAAGGAGAGTGATGTTACAGAGGCCTGAAGTTTTGTTCCACTCACCCAGAGTTTCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-293 Orthologous to human MPP7 (membrane palmitoylated protein 7).

Ensembl:

ensembl_id ENSDART00000081897

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030452 lncRNA upstream 103654 3774742 ~ 3777346 (+) False XLOC_015156
TCONS_00033461 lncRNA upstream 273599 3606030 ~ 3607401 (+) True XLOC_015155
TCONS_00033229 lncRNA upstream 410987 3468101 ~ 3470013 (+) True XLOC_015149
TCONS_00033228 lncRNA upstream 426833 3452813 ~ 3454167 (+) True XLOC_015148
TCONS_00033460 lncRNA upstream 776271 3100598 ~ 3104729 (+) True XLOC_015143
TCONS_00030459 lncRNA downstream 180309 4074412 ~ 4085421 (+) False XLOC_015160
TCONS_00030473 lncRNA downstream 1000753 4894856 ~ 4898290 (+) True XLOC_015166
TCONS_00030488 lncRNA downstream 1832361 5726464 ~ 5729675 (+) False XLOC_015175
TCONS_00033230 lncRNA downstream 1832599 5726702 ~ 5726906 (+) True XLOC_015175
TCONS_00033462 lncRNA downstream 1837024 5731127 ~ 5736505 (+) True XLOC_015176
TCONS_00030455 mRNA upstream 14029 3823813 ~ 3866971 (+) False XLOC_015157
TCONS_00030454 mRNA upstream 14030 3823813 ~ 3866970 (+) False XLOC_015157
TCONS_00030456 mRNA upstream 17428 3823854 ~ 3863572 (+) True XLOC_015157
TCONS_00030453 mRNA upstream 60841 3809226 ~ 3820159 (+) True XLOC_015156
TCONS_00030449 mRNA upstream 60860 3696038 ~ 3820140 (+) False XLOC_015156
TCONS_00030458 mRNA downstream 91980 3986083 ~ 4009200 (+) True XLOC_015159
TCONS_00030460 mRNA downstream 180970 4075073 ~ 4159921 (+) False XLOC_015160
TCONS_00030461 mRNA downstream 180970 4075073 ~ 4161277 (+) False XLOC_015160
TCONS_00030462 mRNA downstream 181010 4075113 ~ 4159862 (+) False XLOC_015160
TCONS_00030463 mRNA downstream 252196 4146299 ~ 4159744 (+) False XLOC_015160
TCONS_00030445 other upstream 313041 3565376 ~ 3567959 (+) True XLOC_015153
TCONS_00030434 other upstream 706005 3174870 ~ 3174995 (+) True XLOC_015144
TCONS_00030432 other upstream 858345 2994052 ~ 3022655 (+) True XLOC_015141
TCONS_00030431 other upstream 886842 2994052 ~ 2994158 (+) False XLOC_015141
TCONS_00030412 other upstream 1710987 2168582 ~ 2170013 (+) False XLOC_015128
TCONS_00030468 other downstream 387579 4281682 ~ 4288546 (+) True XLOC_015162
TCONS_00030477 other downstream 1486755 5380858 ~ 5389696 (+) True XLOC_015169
TCONS_00030484 other downstream 1693392 5587495 ~ 5677726 (+) False XLOC_015174
TCONS_00030485 other downstream 1706940 5601043 ~ 5677644 (+) False XLOC_015174
TCONS_00030507 other downstream 2362344 6256447 ~ 6258795 (+) True XLOC_015187

Expression Profile

Expression of TCONS_00030457 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.
//

Expression of TCONS_00030457 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_01258265_01259530.mRNA True 378 mRNA 0.49 3 CI01000003 1258265 ~ 1259551 (+)
bowfin (Amia calva) TU40431 True 541 lncRNA 0.42 5 CM030124.1 9308637 ~ 9324063 (+)