RNA id: XM_036976484.1


Basic Information

Item Value
RNA id XM_036976484.1
length 360
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC118964499
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 39112723 ~ 39113347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTCCTCGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACACCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACACCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTGTCAAGCCAACTCCTCTTTTTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396554 lncRNA upstream 91272 39021232 ~ 39021451 (+) True G350413
TU396544 lncRNA upstream 96349 39016149 ~ 39016374 (+) True G350407
TU396539 lncRNA upstream 99280 39013242 ~ 39013443 (+) True G350402
TU396536 lncRNA upstream 101690 39008564 ~ 39011033 (+) True G350399
TU396641 lncRNA downstream 1427 39114774 ~ 39115485 (+) True G350485
TU396652 lncRNA downstream 33027 39146374 ~ 39146674 (+) True G350495
TU396654 lncRNA downstream 33412 39146759 ~ 39147267 (+) True G350496
TU396655 lncRNA downstream 34692 39148039 ~ 39148274 (+) True G350497
TU396656 lncRNA downstream 36711 39150058 ~ 39150287 (+) True G350498
XR_005051534.1 mRNA upstream 116970 38994685 ~ 38995753 (+) True LOC118964477
XM_036976243.1 mRNA upstream 118165 38960535 ~ 38994558 (+) True LOC110521104
XM_021601051.2 mRNA upstream 170711 38921338 ~ 38942012 (+) False LOC110522592
XM_036976253.1 mRNA downstream 8877 39122224 ~ 39186001 (+) False LOC110521105
XM_036976244.1 mRNA downstream 8877 39122224 ~ 39186863 (+) False LOC110521105
XM_036976245.1 mRNA downstream 8877 39122224 ~ 39186864 (+) False LOC110521105
XM_036976247.1 mRNA downstream 8877 39122224 ~ 39186864 (+) False LOC110521105
XM_036976246.1 mRNA downstream 8878 39122225 ~ 39186863 (+) False LOC110521105
TU396290 other upstream 207949 38903730 ~ 38904774 (+) True G350211
TU396268 other upstream 215067 38894143 ~ 38897656 (+) True LOC110522591
TU396263 other upstream 216202 38894143 ~ 38896521 (+) False LOC110522591
TU396266 other upstream 216702 38890383 ~ 38896021 (+) False LOC110522591
TU396861 other downstream 274794 39388141 ~ 39389435 (+) False G350665
TU396863 other downstream 275242 39388589 ~ 39389474 (+) True G350665
TU397710 other downstream 1021340 40134687 ~ 40136773 (+) False G351441
TU397708 other downstream 1021619 40134966 ~ 40136773 (+) True G351441
TU398718 other downstream 1876812 40990159 ~ 40990505 (+) True G352136

Expression Profile