RNA id: XM_036976266.1


Basic Information

Item Value
RNA id XM_036976266.1
length 990
RNA type mRNA
GC content 0.56
exon number 2
gene id LOC118964479
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40311638 ~ 40312681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCAAGTGTGACGCCGGGTCCAAATGCCACAGCTGAAGCAACTGCCAACCATGCCTCGGCAGAAGCGGCCCGCGCCTCAGCTGAAGCAACTGCCAACCATGCCTCAGCAGAAGCGGCTGGCCCCTGCGCCTCAGCTGGAGCAACTGCCAACCATGCCTCGGCAGAAGCGGCCCACGCCTCAGCTGGAGCAACTGCCAACCATACCTCGGCAGAAGCGGCCCGCGCCTCAGCTGGAGCAACTGCCAACCATACCTCGGCAGAAGCAGCTGGCCCCCGCACCTCGGCAGAAGCGGCCCGCGCCTCATCTGGAGCAACTGCCAACCATGTCTCGTCAGAAGCGGCCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACCATGCCTCTGCAGAAGCGACCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACTGTACCTCTGCAGAAGCGGCCGGCCCTCGCGCCTCAGCTGAAGCAACTGCCAACCGTACCTCTGCAGAAGCGACCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAACCATACCTCTGCAGAAGCGGCCCACGCCTCAGCTGAAGCAACTGCCAACCGTACCTCTGCAGAAGCGGCCGGCCTTGAACAGACGGCCCGACCCCTCAACAAGCTAGATAGGGAGATCATAATTTGGTTTGCCCAACTCCTTAATCGTCTTTCTCCTGTTACTGTGCCTCCATTTGAAGAAAAGGGCAAAGGTAACTGAGATGAGTAATTGTGCAAACTAATGCGCTTGTTTGAAATGAGGATCTCCTTCACTTGCGCATTGTCATGCAAATTGTTTACAGGGGTGAACGCTACAACGGTATGAATTGTTTTCAAAACCATACGACTAAAATTTACTTCTGATTTGGCTACTATTGCTGACACTTAGGCTGTACGGTTATGATTTTTATGTGTCCTGGTGTTCCTGCTACTCTTACATGATTTGTTCAGTAAACAATTTGACTTCCAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397736 lncRNA upstream 41891 40233300 ~ 40269747 (+) False G351466
TU397737 lncRNA upstream 41891 40233300 ~ 40269747 (+) False G351466
TU397739 lncRNA upstream 41891 40233300 ~ 40269747 (+) True G351466
TU397742 lncRNA upstream 42977 40204070 ~ 40268661 (+) False syndig1l
TU397744 lncRNA upstream 42977 40204070 ~ 40268661 (+) True syndig1l
TU397941 lncRNA downstream 9699 40322380 ~ 40453300 (+) True G351626
TU397961 lncRNA downstream 47258 40359939 ~ 40373918 (+) True G351643
TU398106 lncRNA downstream 153131 40465812 ~ 40466209 (+) True G351739
TU398139 lncRNA downstream 188243 40500924 ~ 40501156 (+) True G351771
TU398141 lncRNA downstream 189551 40502232 ~ 40502684 (+) True G351773
XM_021601071.2 mRNA upstream 45949 40182377 ~ 40265689 (+) False syndig1l
XM_036976258.1 mRNA upstream 659932 39563579 ~ 39651706 (+) False ino80
XM_036976261.1 mRNA upstream 659932 39563579 ~ 39651706 (+) False ino80
XM_036976262.1 mRNA upstream 659932 39563580 ~ 39651706 (+) False ino80
XM_036976260.1 mRNA upstream 659932 39563770 ~ 39651706 (+) False ino80
XM_036976308.1 mRNA downstream 66853 40379534 ~ 40386303 (+) True LOC118936457
XR_005051537.1 mRNA downstream 78969 40391650 ~ 40393235 (+) False LOC110522596
XM_036976287.1 mRNA downstream 78970 40391651 ~ 40415618 (+) False LOC110522596
XM_036976281.1 mRNA downstream 78984 40391665 ~ 40415618 (+) False LOC110522596
XM_036976283.1 mRNA downstream 78988 40391669 ~ 40415618 (+) False LOC110522596
TU397710 other upstream 174865 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 174865 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 922164 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 922203 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1406864 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 677478 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 897566 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 898432 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 1053520 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1811995 42124676 ~ 42125759 (+) True G353125

Expression Profile