RNA id: XM_036976315.1


Basic Information

Item Value
RNA id XM_036976315.1
length 3441
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110521109
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 40650654 ~ 40674839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGCACTGCTCCACCATACGCGCGCACGTGTAGCCACATCCGCACAGAGCGCATCCTGCAATCCGTTCCCCATCCAGCCACCCTTTCACTGGTAGTCTTCAAGGCAGACCCGGTGGAGACGCCTACTTTCATTCACTCTCCAAACTGGACACAAGAATCTCGATCGCTCTAACGCTCCTCCAGTCTCTACCAGCAGCAGCACCATGGAAaccaagagaccagaggacaggatCTCTTCTTCAGGACCACAGTCTTGTCCCTCTACAGCAGTAAGACCCACAGACACCAGGCAGCCTGGGGCAGAGACACAGGAGACACTGgtGTACATGCAGTGCTGTGGGCAGGAAGCCCCTAATATGACAGAGAGGAACGGCCATAGGAAAATCAGGGATAGGAACCATCAGGACCCAGTCTTCGTGCCCCAGGGGAGGGCTGAGAGGGTCTGGACCCACCCCTCGGCTCCCCAGCAGACTACAACTCCCACAATACCCTCCTGCCCTGTGTCTTCCCCTTACAGttTCTGGAGCCCAGGGTCGGTGGAGATGGATGAGATCATGGCAGCCATGGTTCTGACCAGTCTGTCCTGCAGCCCTGTGGTCCAGAGTTCTCCTCAGAGTCAGAATGACTCTCTACCAGGTTCATCATCATGGGGCGGAGACATGGAGTGTAGGGGCGGAGACATGGAGTGTAGTGGCGGAGACATGGAGTGTGGGGGCGGAGACATGGAGTGTGGGGGCGGGGAGCTTTCGGACAGCGGCAGCAGTGGCTACTGGAGCTGGGACCACGGCAACGTTAGTCCCTCTCCGTCCCCTTCTGTCGCCGAGATGGACAGCCGCCCAGATGAAGGACTGCATATGGAGCTGGGGGGTGAGCTACATACAGCCGCAAGGTCAAAGAGTTCTTTCAGAGGAACGTACAGGTGTCTGTGGCCCAGCTGTGGCAAGGTGCTCACGTCTTCAGTTGGTATGAAGAGACATGTCCGTGTGATGCACCTGGGTGGATCGGAGCAGTCCCCAAGAGAGGAGGACTTCTACTACACAAAGATTTCCTGCGAAGCTCCAGCAGACCCCTCTCTCGTTTCCCCTCTTCCCCCAGAACCCTCTCCAGACCCCTCTCCCGTCTCCCCTCTTCCCCCAGCCCCCCTCCCGGCTTCTTCCCCTCACGTCCCCTGGGCATCCTGTGGCTCCCCTCTAAGCCCTGATCCAGATTCCGGACTCCAGATCACCTCCTCGGGGTCAGGGAGCTCCAGGCCCAGCTCAGGTCCAGAGTCAGCCCCATACCAGCACAGACCTCTCAGCCAGTCTGCCCCTAGCTCCTCCTGGCAGATACAGACAGACCATCTCTATCAGGCCTGCACTCCCCTCCAGGTGACCATGTCCTCCTGCAGCCCTGCCCCTTGTTGTTggacccctccccctctcaccgtCTCTAACCAACACAGCCATCACAACACCCAGGTGGTGACGGGTCGCTGCAGGTCTGTGAGTGTGGGAGAGCAGTGGCTTCAACAGAACAGCGCCACCAACAGGCTAACCACCTTGAGAGCAGCCTCCCCGTCGGGCTCTCACTGCCCCTTCAGGAAGGGGCGAGGGGAGGCTAAGAAGTGTCGTAAGGTGTACGGAGTGGAGCACAAGGAGCAGTGGTGCACGGCCTGCCGCTGGAAGAAAGCCTGCCAGCGCTTCACAGACTAAACGAGTGTGTGAACGAAGGATGATGGAAAAAAGAGACTGAAAAAGAGAGGACACGATCAGGATCAGGGCCTGTAAAGCCATCAACAACTTCCTTTTTTTCTACCTTGTTTATTTTCCCCTCGAGGAATATAGTTTTTTATTTGTTGACCTGAGAAGTACGTCAGTGTGTGATGGTGGTGCTAGTAGCTAGTAGGTTAGACTGTCTTATGTGGTAGGCCTACCGATGCTCTTccgtcccagacctgtttgtgctgtGTAGCATGGCAACAACCATAGAAGTTAGCTAAACACAGGGATGGGCACTGGCTAGTTGCCCTGGGTAACATTTGGGTCCAAAGTATGCGCCATACAATATTTCCAAGAACAAACTTTGACTGGCCTGGTGTGATCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTATCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGTATGGTCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGTATGGTCTGTACGGTACTATCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTATCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGTATGGTCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGTATGGTCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACCAGTATGGTCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAACCTGGTCTGTACGGTACTATCAGGCTAGCTTCATATCCTACTAGTATGGTCTGAATAGTACTAGCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGTATGGTCTGTACGGTACTATCGGGCTAGCTTCATAtcctactagcctggtctgaataGTACTAGCGGGCTAGCTTCATATCCTACTAGCCTAGTCTGAATAGTACTATCGGGCTAGCTTCATAtcctactagcctggtctgaacggTACTAGCGGGCTAGCTTCATATCCATCCCTGGTTGAACTCTTGAACAAGATACTTAACCCTTAACTGCTCCCCATCCAGGATTCTTCTTCTTCTATACAGGAAACCGATCTGTCCCCAGGTTCCTTCCAccttccactgagagcatttctcctccccttccactgagagcatttctcctccccttccactgagagcatttctcctccccttccactgagagcattctcctccccttccactgagagcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398205 lncRNA upstream 14654 40635736 ~ 40636000 (+) True G351820
TU398202 lncRNA upstream 16091 40632451 ~ 40634563 (+) False G351819
TU398203 lncRNA upstream 16091 40634004 ~ 40634563 (+) True G351819
TU398201 lncRNA upstream 17741 40632285 ~ 40632913 (+) False G351819
TU398211 lncRNA downstream 3016 40677593 ~ 40678107 (+) False G351826
TU398212 lncRNA downstream 3099 40677676 ~ 40678170 (+) False G351826
TU398213 lncRNA downstream 3099 40677676 ~ 40678107 (+) True G351826
TU398228 lncRNA downstream 12769 40687346 ~ 40687985 (+) True G351840
TU398231 lncRNA downstream 15759 40690336 ~ 40691039 (+) True G351843
XM_021598373.2 mRNA upstream 19833 40626614 ~ 40630821 (+) True paqr8
NM_001124651.1 mRNA upstream 20970 40626393 ~ 40629684 (+) False paqr8
XM_036976311.1 mRNA upstream 53265 40579686 ~ 40597389 (+) True stmn4
XM_036976288.1 mRNA upstream 212846 40436551 ~ 40437808 (+) True LOC110522596
XM_036976290.1 mRNA upstream 217797 40431447 ~ 40432857 (+) False LOC110522596
XM_021601088.2 mRNA downstream 34085 40708662 ~ 40714024 (+) False LOC110522626
XM_021601089.2 mRNA downstream 34715 40709292 ~ 40714024 (+) True LOC110522626
XM_036976317.1 mRNA downstream 46949 40721526 ~ 40732294 (+) False si:ch211-63o20.7
XM_036976319.1 mRNA downstream 46949 40721526 ~ 40732344 (+) False si:ch211-63o20.7
XM_036976318.1 mRNA downstream 46949 40721526 ~ 40732351 (+) False si:ch211-63o20.7
TU397710 other upstream 513881 40134687 ~ 40136773 (+) False G351441
TU397708 other upstream 513881 40134966 ~ 40136773 (+) True G351441
TU396863 other upstream 1261180 39388589 ~ 39389474 (+) True G350665
TU396861 other upstream 1261219 39388141 ~ 39389435 (+) False G350665
TU396290 other upstream 1745880 38903730 ~ 38904774 (+) True G350211
TU398718 other downstream 315582 40990159 ~ 40990505 (+) True G352136
TU398979 other downstream 535670 41210247 ~ 41210998 (+) True G352340
TU398983 other downstream 536536 41211113 ~ 41213949 (+) True G352341
TU399156 other downstream 691624 41366201 ~ 41366607 (+) True G352477
TU399921 other downstream 1450099 42124676 ~ 42125759 (+) True G353125

Expression Profile